FvH4_2g14810

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
13017046 .. 13018854
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14810.t1

Sequence Viewer

Length: 1809 bp
ATGCATCAAAAATTGCTGAAAATCTTACATAACTGCAACTCTCTGAAACAACTGAAACAGACCCACCTTCACATCTTCATTCATGGGCTCCAAGATAGCACCTTCTTACTCCCCAAGCTCCTCACTCTCTCCTCACAACTGGGTTCTCCTCATTACGCTCATTCCATTTTCCAATACTCTCGCTGCCCCAATGTTGTGGCTTGCAACACAATGATACAATGCTTCATTGGAAAGACCCCAGTAGGCGCATTGCAAGTCTACGATCGAATGAAAGCATTGAAAGTTTCGCCGAATAGTTATACTTTCACTTTTCTTCTTAGCTGCTTTGAATCCTGTGAGGCCCTTGAAGATGGGAGGGTGGTTCATGGTGACATTGTCAAACTTGGTTTCAGCTCCAGCGTCTTTGTTCAGAACACCCTTTTGGATTTCTATGCGAAATGTGCCGGCGGTTTTGGTTTTGATTCTGCACGGAAGGTGTTTGATGAAATGCCTGAGAGGGATGTGGTTTCTTGGAATTCTATGATTGCTAGTTACATGAGTCGTGGTGGGGTAGAGCCTGCAATGAGGCTGTTTGAGTCAGTTCCGGAGAAAAACATTGTGACATGGAACTCTGTTGTTTCTGGTCTTTCCAAGGCCGGGAACATGGAGTTGGCCCGTTCGGTTTTTGAGAAGATGCCTGAAAGAAATGATGTTTCCTGGAATTCATTGATAACTGCGTATATACGGTTGGGTGATATGAGCTCAGCTCGGTGTTTATTTGAACAAATGCCTGAGAAAACAGTTGTTTCTTGGACCGCCATGGTGTCTGGATACAACATCATTGGAGATCTTGAATCAGCCAGGAATGTATTCAGTTTGATGCCGGTGAAAAATGTTGTATCGTGGAATGCTATGATTGCAGGTTATGTTCACAACCACATGTTTGATCAAGCTCTTTCTGTATTCCGCAAGATGTTGATTGATGGCAAGTGCAGGCCTGATCAGAGCACTATGATCAGTGTGCTATCGGCATGTACTCACTTGGGTTCTCTTGAACATGGGAAATGGACCGAGTCTTATATTAAGAGGAACAAGTTTGACATGTCTGTACCTTTGGGAAATGCTCTAATAGACATGTTCGCAAAGTGTGGAGTTGTAGAAAATGCAAAAGCTGTTTTTGATAAGATGGACAACAGATGTATAATTACATGGACGACAATGGTTTCAGGTCTAGCTGTTAATGGGTGGTGCAGAGAAGCATTAGCTCTCTTTGAAACAATGTGTTTAAGAGGACCTAAACCAGATGATGTGATTTTTATTGCTGTTCTATCAGCTTGCACTCATGGAGGGCTGGTAGACGAGGGGAAACAAATTTTTTATCAGATGGAACATGAGTTTGACATCAAGCCCCGAATAGAGCATTATGGGTGCATGGTTGATCTTCTAGGTCGAGCCGGGAAGTTGGAAGAAGCACTCAGATTTGTAGAAAACATGCATTTGGAGCCAAATGCTGTTATTTGGGCTACTCTACTGGGTTCTTGTAAGATTCATGGAAGTGGAGATCTGGTGGAGTCTGTAACCAGGAGGATTATAGAGCAGGAACCGGAAAATCCCAGTTATTTAACTCTAGTTTCTAATTTGAGTGCATCAGTTGGACAATGGAAAGATGTGCTGACCTATCGGCAAGTTATGAGACAACAGGGAATAGAAAAGGTTCCTGGTTGTAGCTCAATCCAAATGGGGAACAAGATAGATGAGTTTCTTGCCCACGATACAAGGCATGACGAAAGAAAGAAAAGAGATTTATGGAGTTTTGAATTGTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

603

Amino Acids

67.77

Weight (kDa)

6.68

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 109 4.1e-09 PPR repeat family
PPR_2 PF13041 197 - 229 2.1e-06 PPR repeat family
PPR PF01535 200 - 229 1.6e-07 PPR repeat
PPR PF01535 231 - 259 3.3e-06 PPR repeat
PPR_2 PF13041 290 - 338 6.1e-09 PPR repeat family
PPR PF01535 293 - 321 1.2e-06 PPR repeat
PPR PF01535 395 - 424 6.9e-06 PPR repeat
E_motif PF20431 516 - 572 1.3e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015541)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 890
AccI GTMKAC 2 cut(s) 258, 1335
AccIII TCCGGA 1 cut(s) 583
AciI CCGC 3 cut(s) 447, 795, 946
AcsI RAATTY 3 cut(s) 514, 700, 1350
AfaI GTAC 2 cut(s) 1015, 1089
AfiI CCNNNNNNNGG 1 cut(s) 636
AflIII ACRYGT 3 cut(s) 918, 1080, 1113
AgsI TTSAA 9 cut(s) 280, 329, 347, 761, 833, 1034, 1253, 1796, 1805
AjnI CCWGG 4 cut(s) 695, 839, 1559, 1696
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 632, 664
Alw21I GWGCWC 2 cut(s) 743, 989
Alw26I GTCTC 1 cut(s) 1666
Aor13HI TCCGGA 1 cut(s) 583
AoxI GGCC 4 cut(s) 339, 633, 651, 974
ApeKI GCWGC 2 cut(s) 183, 321
ApoI RAATTY 3 cut(s) 514, 700, 1350
Asp700I GAANNNNTTC 2 cut(s) 848, 1692
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 5 cut(s) 340, 652, 792, 1047, 1271
AsuC2I CCSGG 2 cut(s) 637, 1435
AsuHPI GGTGA 3 cut(s) 380, 743, 877
AvaII GGWCC 3 cut(s) 792, 1047, 1271
BanII GRGCYC 2 cut(s) 90, 743
Bbv12I GWGCWC 2 cut(s) 743, 989
BbvI GCAGC 2 cut(s) 170, 308
BccI CCATC 4 cut(s) 344, 956, 1159, 1357
BciT130I CCWGG 4 cut(s) 697, 841, 1561, 1698
BciVI GTATCC 1 cut(s) 803
BclI TGATCA 3 cut(s) 925, 979, 993
BcnI CCSGG 2 cut(s) 637, 1435
BcoDI GTCTC 1 cut(s) 1666
BfaI CTAG 4 cut(s) 528, 1211, 1424, 1607
BfuAI ACCTGC 1 cut(s) 890
BfuI GTATCC 1 cut(s) 803
BglII AGATCT 2 cut(s) 826, 1540
BisI GCNGC 2 cut(s) 184, 322
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 2 cut(s) 185, 323
Bme1390I CCNGG 6 cut(s) 637, 697, 841, 1435, 1561, 1698
Bme18I GGWCC 3 cut(s) 792, 1047, 1271
BmgT120I GGNCC 5 cut(s) 340, 652, 792, 1047, 1271
BmiI GGNNCC 4 cut(s) 89, 1482, 1581, 1695
BmrFI CCNGG 6 cut(s) 637, 697, 841, 1435, 1561, 1698
BmrI ACTGGG 4 cut(s) 149, 233, 1520, 1587
BmsI GCATC 4 cut(s) 13, 663, 849, 1634
BmuI ACTGGG 4 cut(s) 149, 233, 1520, 1587
BplI GAGNNNNNCTC 2 cut(s) 730, 762
BpmI CTGGAG 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 742
BpuMI CCSGG 2 cut(s) 637, 1435
BsaJI CCNNGG 2 cut(s) 630, 798
BsaWI WCCGGW 2 cut(s) 583, 1582
BsaXI ACNNNNNCTCC 4 cut(s) 1317, 1347, 1530, 1560
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse118I RCCGGY 2 cut(s) 443, 862
Bse1I ACTGG 4 cut(s) 144, 239, 1515, 1593
Bse3DI GCAATG 2 cut(s) 248, 567
BseAI TCCGGA 1 cut(s) 583
BseBI CCWGG 4 cut(s) 697, 841, 1561, 1698
BseDI CCNNGG 2 cut(s) 630, 798
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 2 cut(s) 248, 567
BseMII CTCAG 4 cut(s) 483, 756, 762, 1468
BseNI ACTGG 4 cut(s) 144, 239, 1515, 1593
BseRI GAGGAG 3 cut(s) 110, 121, 138
BseXI GCAGC 2 cut(s) 170, 308
BsgI GTGCAG 3 cut(s) 450, 991, 1249
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 4 cut(s) 341, 635, 653, 976
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 743, 989
BsiSI CCGG 6 cut(s) 444, 584, 636, 863, 1434, 1583
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 1 cut(s) 1666
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 4 cut(s) 341, 635, 653, 976
Bsp1286I GDGCHC 3 cut(s) 90, 743, 989
Bsp13I TCCGGA 1 cut(s) 583
Bsp143I GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
Bsp1720I GCTNAGC 1 cut(s) 742
Bsp19I CCATGG 1 cut(s) 798
BspACI CCGC 3 cut(s) 447, 795, 946
BspANI GGCC 4 cut(s) 341, 635, 653, 976
BspCNI CTCAG 4 cut(s) 484, 755, 763, 1467
BspEI TCCGGA 1 cut(s) 583
BspLI GGNNCC 4 cut(s) 89, 1482, 1581, 1695
BspMI ACCTGC 1 cut(s) 890
BsrDI GCAATG 2 cut(s) 248, 567
BsrFI RCCGGY 2 cut(s) 443, 862
BsrI ACTGG 4 cut(s) 144, 239, 1515, 1593
BssAI RCCGGY 2 cut(s) 443, 862
BssECI CCNNGG 2 cut(s) 630, 798
BssMI GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
BssT1I CCWWGG 2 cut(s) 630, 798
Bst2UI CCWGG 4 cut(s) 697, 841, 1561, 1698
Bst4CI ACNGT 2 cut(s) 726, 781
BstC8I GCNNGC 5 cut(s) 202, 445, 558, 974, 1315
BstDEI CTNAG 5 cut(s) 317, 492, 742, 771, 1454
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 7 cut(s) 265, 829, 928, 982, 996, 1420, 1543
BstMAI GTCTC 1 cut(s) 1666
BstMBI GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 3 cut(s) 440, 896, 1480
BstNI CCWGG 4 cut(s) 697, 841, 1561, 1698
BstNSI RCATGY 5 cut(s) 922, 1014, 1084, 1117, 1474
BstSCI CCNGG 6 cut(s) 635, 695, 839, 1433, 1559, 1696
BstV1I GCAGC 2 cut(s) 170, 308
BstX2I RGATCY 2 cut(s) 826, 1540
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 2 cut(s) 826, 1540
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 4 cut(s) 341, 635, 653, 976
BtgI CCRYGG 1 cut(s) 798
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 1003
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 5 cut(s) 202, 445, 558, 974, 1315
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 2 cut(s) 443, 862
Cfr13I GGNCC 5 cut(s) 340, 652, 792, 1047, 1271
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 1014, 1088
CviQI GTAC 2 cut(s) 1014, 1088
DdeI CTNAG 5 cut(s) 317, 492, 742, 771, 1454
DpnI GATC 7 cut(s) 264, 828, 927, 981, 995, 1419, 1542
DpnII GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
Ecl136II GAGCTC 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 630, 798
Eco147I AGGCCT 1 cut(s) 976
Eco24I GRGCYC 2 cut(s) 90, 743
Eco47I GGWCC 3 cut(s) 792, 1047, 1271
Eco53kI GAGCTC 1 cut(s) 741
EcoICRI GAGCTC 1 cut(s) 741
EcoO109I RGGNCCY 2 cut(s) 340, 1271
EcoRI GAATTC 2 cut(s) 514, 700
EcoRII CCWGG 4 cut(s) 695, 839, 1559, 1696
EcoT14I CCWWGG 2 cut(s) 630, 798
EcoT22I ATGCAT 2 cut(s) 6, 1476
EcoT38I GRGCYC 2 cut(s) 90, 743
ErhI CCWWGG 2 cut(s) 630, 798
FbaI TGATCA 3 cut(s) 925, 979, 993
FblI GTMKAC 2 cut(s) 258, 1335
Fnu4HI GCNGC 2 cut(s) 184, 322
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 2 cut(s) 90, 743
Fsp4HI GCNGC 2 cut(s) 184, 322
FspBI CTAG 4 cut(s) 528, 1211, 1424, 1607
GlaI GCGC 1 cut(s) 247
GluI GCNGC 2 cut(s) 184, 322
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 4 cut(s) 341, 635, 653, 976
HapII CCGG 6 cut(s) 444, 584, 636, 863, 1434, 1583
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 8 cut(s) 329, 461, 538, 575, 833, 1052, 1525, 1550
HpaII CCGG 6 cut(s) 444, 584, 636, 863, 1434, 1583
HphI GGTGA 3 cut(s) 380, 743, 877
Hpy166II GTNNAC 3 cut(s) 259, 910, 1336
Hpy188I TCNGA 5 cut(s) 45, 411, 984, 1362, 1457
Hpy188III TCNNGA 4 cut(s) 584, 807, 830, 1031
Hpy8I GTNNAC 3 cut(s) 259, 910, 1336
HpyAV CCTTC 3 cut(s) 77, 112, 466
HpyCH4III ACNGT 2 cut(s) 726, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 896, 1480
HpyF3I CTNAG 5 cut(s) 317, 492, 742, 771, 1454
HspAI GCGC 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 583
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Ksp22I TGATCA 3 cut(s) 925, 979, 993
Kzo9I GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
LmnI GCTCC 4 cut(s) 93, 123, 398, 1480
Lsp1109I GCAGC 2 cut(s) 170, 308
LweI GCATC 4 cut(s) 13, 663, 849, 1634
MaeI CTAG 4 cut(s) 528, 1211, 1424, 1607
MaeIII GTNAC 4 cut(s) 368, 530, 598, 1555
MalI GATC 7 cut(s) 264, 828, 927, 981, 995, 1419, 1542
MboI GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
MboII GAAGA 6 cut(s) 67, 305, 359, 682, 1412, 1457
MflI RGATCY 2 cut(s) 826, 1540
MhlI GDGCHC 3 cut(s) 90, 743, 989
MluCI AATT 7 cut(s) 11, 514, 700, 1182, 1350, 1615, 1796
MlyI GAGTC 4 cut(s) 547, 584, 1061, 1559
MmeI TCCRAC 2 cut(s) 1422, 1612
Mph1103I ATGCAT 2 cut(s) 6, 1476
MroI TCCGGA 1 cut(s) 583
MroNI GCCGGC 1 cut(s) 443
MroXI GAANNNNTTC 2 cut(s) 848, 1692
MseI TTAA 4 cut(s) 1062, 1218, 1265, 1601
MslI CAYNNNNRTG 1 cut(s) 1533
MspI CCGG 6 cut(s) 444, 584, 636, 863, 1434, 1583
MspR9I CCNGG 6 cut(s) 637, 697, 841, 1435, 1561, 1698
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 4 cut(s) 697, 841, 1561, 1698
MwoI GCNNNNNNNGC 3 cut(s) 440, 896, 1480
NaeI GCCGGC 1 cut(s) 445
NciI CCSGG 2 cut(s) 637, 1435
NcoI CCATGG 1 cut(s) 798
NdeII GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
NgoMIV GCCGGC 1 cut(s) 443
NlaIV GGNNCC 4 cut(s) 89, 1482, 1581, 1695
NmuCI GTSAC 2 cut(s) 368, 598
NsiI ATGCAT 2 cut(s) 6, 1476
NspI RCATGY 5 cut(s) 922, 1014, 1084, 1117, 1474
PceI AGGCCT 1 cut(s) 976
PciI ACATGT 3 cut(s) 918, 1080, 1113
PctI GAATGC 1 cut(s) 892
PdiI GCCGGC 1 cut(s) 445
PdmI GAANNNNTTC 2 cut(s) 848, 1692
PfeI GAWTC 4 cut(s) 329, 461, 833, 1525
PflFI GACNNNGTC 2 cut(s) 374, 1051
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 2 cut(s) 185, 323
Ple19I CGATCG 1 cut(s) 265
PleI GAGTC 4 cut(s) 546, 583, 1060, 1558
PpsI GAGTC 4 cut(s) 546, 583, 1060, 1558
PpuMI RGGWCCY 1 cut(s) 1271
PscI ACATGT 3 cut(s) 918, 1080, 1113
Psp124BI GAGCTC 1 cut(s) 743
Psp5II RGGWCCY 1 cut(s) 1271
Psp6I CCWGG 4 cut(s) 695, 839, 1559, 1696
PspGI CCWGG 4 cut(s) 695, 839, 1559, 1696
PspN4I GGNNCC 4 cut(s) 89, 1482, 1581, 1695
PspPI GGNCC 5 cut(s) 340, 652, 792, 1047, 1271
PspPPI RGGWCCY 1 cut(s) 1271
PsuI RGATCY 2 cut(s) 826, 1540
PsyI GACNNNGTC 2 cut(s) 374, 1051
PvuI CGATCG 1 cut(s) 265
RsaI GTAC 2 cut(s) 1015, 1089
RsaNI GTAC 2 cut(s) 1014, 1088
RseI CAYNNNNRTG 1 cut(s) 1533
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 4 cut(s) 1062, 1218, 1265, 1601
SatI GCNGC 2 cut(s) 184, 322
Sau3AI GATC 7 cut(s) 262, 826, 925, 979, 993, 1417, 1540
Sau96I GGNCC 5 cut(s) 340, 652, 792, 1047, 1271
SchI GAGTC 4 cut(s) 547, 584, 1061, 1559
ScrFI CCNGG 6 cut(s) 637, 697, 841, 1435, 1561, 1698
SduI GDGCHC 3 cut(s) 90, 743, 989
SfaNI GCATC 4 cut(s) 13, 663, 849, 1634
SinI GGWCC 3 cut(s) 792, 1047, 1271
SmiMI CAYNNNNRTG 1 cut(s) 1533
Sse9I AATT 7 cut(s) 11, 514, 700, 1182, 1350, 1615, 1796
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 3 cut(s) 447, 795, 946
SspMI CTAG 4 cut(s) 528, 1211, 1424, 1607
SstI GAGCTC 1 cut(s) 743
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 6 cut(s) 635, 695, 839, 1433, 1559, 1696
StyI CCWWGG 2 cut(s) 630, 798
TaaI ACNGT 2 cut(s) 726, 781
TaqI TCGA 2 cut(s) 265, 1429
TaqII GACCGA 1 cut(s) 1064
TasI AATT 7 cut(s) 11, 514, 700, 1182, 1350, 1615, 1796
TatI WGTACW 1 cut(s) 1013
TfiI GAWTC 4 cut(s) 329, 461, 833, 1525
Tru1I TTAA 4 cut(s) 1062, 1218, 1265, 1601
Tru9I TTAA 4 cut(s) 1062, 1218, 1265, 1601
TscAI CASTG 1 cut(s) 1003
TseFI GTSAC 2 cut(s) 368, 598
TseI GCWGC 2 cut(s) 183, 321
Tsp45I GTSAC 2 cut(s) 368, 598
TspDTI ATGAA 8 cut(s) 67, 71, 214, 284, 353, 498, 693, 1517
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 1003
Tth111I GACNNNGTC 2 cut(s) 374, 1051
VpaK11BI GGWCC 3 cut(s) 792, 1047, 1271
XapI RAATTY 3 cut(s) 514, 700, 1350
XceI RCATGY 5 cut(s) 922, 1014, 1084, 1117, 1474
XmiI GTMKAC 2 cut(s) 258, 1335
XmnI GAANNNNTTC 2 cut(s) 848, 1692
XspI CTAG 4 cut(s) 528, 1211, 1424, 1607
Zsp2I ATGCAT 2 cut(s) 6, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.