Rh6DG215400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015541
Physical Location & Seq
Forward (+)
38509351 .. 38511186
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG215400.1

Sequence Viewer

Length: 1836 bp
ATGCATCAAAAACTGCTGAAAATCCTGCAGGACTGCAAGTCTCTGAAACAACTGAAACAGAGCCACCTTCAGATATTCATCCATGGACTACAACACAGCAGCTTTTTGCTTCCCAAGCTCCTCACTCTCTCCTCGCAACTGGGTTTTCTTCATTACGCTTATTCCATTTTCCAAACTTCTTGCTCCCCCAATGTTGTGGCTTACAACACAATCATAAAATGCTTCATAGGAAAGACCCGAGTAGACGCATTGCGAGTCTACGATCAAATGAAGACGTTAAGGATTGTGCCGAATGGTTATACTTTCACTTTTCTTCTCAGGTGTTTTGAATCTTTTGAGGCCCTTGAGGATGGGAAAGTGGTTCATGGTGACATTGTCAAGCTTGGTTTCGGCTCCAGCGTCTTTGTTCAGAACACCCTTTTGGATTTCTACGCCAAATGTGCAGGCGGTTTTGAGTTTGGTTCTGCACGCCAGGTGTTTGATGAAATGGCCGAGAGAGATGTGGTCTCTTGGAATTCCATGATTGCTGCTTACATGACTCGTGGTAGGATAGAGCCTGCAATGAGGTTGTTTCATTCGGTGCCGAAGAAGAACATTGTGACATGGAACTCTGTTGTTTCTGGTCTTTCCAAGGCCGGAAACATGGAGTTGGCGCATTCGGTTTTTGAGGAAATGCCAGAAAGAAATGATGTTTCCTGGAATTCATTGATCACTGCTTATATGCGGTTGGGTGATATGAGCTCAGCTCGGTGTCTGTTTGAACAAATGCCGGAGAAAACAGTGGTTTCTTGGACCGCCATGGTGTCTGGATACACCGCCATTGGAGATGTTGAATCAGCCAGGAACTTGTTCAGTCAGATGCCGGTTAAAAATGTTGTATCGTGGAATGCTATGATTGCAGGTTATGTTCATAACCACATGTTTGATCAAGCTCTTTCTGTTTTCCGTGAGATGTTGATAGATGGCAAGTGCAGGCCTGATCAGAGTACTTTGATCAGTGTACTATCGGCATGTACTCACTTGGGTTCTCTTGAACATGGAAAATGGATCGAGTCTTATGTTAAGAGAAACAAGTTTGACATGTCTGTACCTTTAGGAAATGCTCTAATAGACATGTATGCAAAGTGTGGAGATGTAGAAAATGCAAAAGCTGTTTTTGATGAGATGGAACAAAGATGTATAATTACATGGACGACAATGGTTTCAGGTCTAGCTGTTAATGGGTGGTGCAGGGAAGCATTAGCTCTCTTTGAAACAATGTGTTTAAGCGGACATAAACCAGATGATGTGATTTTCATTGTGGCTTTATCAGCTTGCACTCATGGAGGGCTGGTAGACGAGGGCAAAATAATTTTTTATCAGATGGAACACGAGTTTGACATCAAGCCCCGAATAGAGCATTATGGGTGCATGGTTGATCTTCTAGGTAGAGCTGGGAAGTTGGAAGAAGCACTCAGGTTTGTAGAAAACATGCATTTGGAGCCAAATGCTGTAATTTGGGCCAGTCTACTGGGTTCCTGTAAGATTCATGGAAATGGAGATCTGGTGGAGTCTGTAACCAGGCGGATTATAGAGCAGGAACCGGAAAATCCCAGCTATTTAACTCTAGTTTCCAATTTGAGTGCATCAGTCGGACAGTGGAAAGATGTGCTGATCTATCGGCAAGTTATGAGACAACAGGGGATAGAAAAGGTTCCTGGTTGTAGCTCAATCCAAATGGGGAACAAGATAGATGAATTTCTTGCCCACGATACAAGACATGAGGAAAGAAAAGAAATTTATGGAGTTTTGAATTGTTTAAATGAACAGGTGTCAGCAGTTTCTGATGGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

611

Amino Acids

68.76

Weight (kDa)

6.14

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 109 2.6e-10 PPR repeat family
PPR_2 PF13041 166 - 199 2.8e-06 PPR repeat family
PPR_2 PF13041 197 - 229 2.9e-07 PPR repeat family
PPR PF01535 200 - 229 8.5e-08 PPR repeat
PPR_2 PF13041 229 - 259 7.6e-06 PPR repeat family
PPR PF01535 231 - 259 2.5e-06 PPR repeat
PPR_2 PF13041 290 - 338 3.1e-09 PPR repeat family
PPR PF01535 293 - 321 5e-07 PPR repeat
PPR PF01535 367 - 393 8.7e-06 PPR repeat
PPR PF01535 395 - 424 7e-06 PPR repeat
E_motif PF20431 511 - 572 1.2e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015541)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14810
malus_domestica MD14G1026500.v1.1
prunus_persica Prupe.8G017600_v2.0.a1
pyrus_communis pycom14g02530
rosa_chinensis RchiOBHm_Chr6g0277401
rosa_laevigata RLG00000013305
rosa_multiflora Rmu_co8455877.1_g000001 Rmu_sc0000030.1_g000006 Rmu_sc0004888.1_g000004
rosa_roxburghii Rroxscaffold_7G00191380
rosa_rugosa Rorug06G0107800 Rorug06G0107800 Rorug06G0107800 Rorug06G0107900
rosa_samantha Rh6DG215400
rosa_wichuraiana Rw6G019160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 890
AccB1I GGYRCC 1 cut(s) 580
AccI GTMKAC 4 cut(s) 243, 258, 1335, 1507
AciI CCGC 6 cut(s) 447, 724, 795, 816, 1269, 1564
AclWI GGATC 1 cut(s) 1055
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 4 cut(s) 514, 700, 1736, 1776
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 4 cut(s) 988, 1002, 1015, 1089
AflIII ACRYGT 3 cut(s) 918, 1080, 1113
AgsI TTSAA 6 cut(s) 329, 761, 833, 1034, 1253, 1792
AhdI GACNNNNNGTC 1 cut(s) 37
AjnI CCWGG 5 cut(s) 471, 695, 839, 1559, 1696
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 3 cut(s) 45, 511, 1666
AlwI GGATC 1 cut(s) 1055
AlwNI CAGNNNCTG 1 cut(s) 1823
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 5 cut(s) 339, 489, 633, 974, 1500
ApeKI GCWGC 2 cut(s) 99, 527
ApoI RAATTY 4 cut(s) 514, 700, 1736, 1776
Asp700I GAANNNNTTC 2 cut(s) 848, 1692
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 3 cut(s) 340, 792, 1500
AsuHPI GGTGA 2 cut(s) 380, 743
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 792
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 743
BauI CACGAG 2 cut(s) 540, 1370
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 111, 514
BccI CCATC 5 cut(s) 344, 956, 1159, 1357, 1820
BciT130I CCWGG 5 cut(s) 473, 697, 841, 1561, 1698
BciVI GTATCC 1 cut(s) 803
BclI TGATCA 4 cut(s) 708, 925, 979, 993
BcoDI GTCTC 3 cut(s) 45, 511, 1666
BfaI CTAG 3 cut(s) 1211, 1424, 1607
BfmI CTRYAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 890
BfuI GTATCC 1 cut(s) 803
BglII AGATCT 1 cut(s) 1540
BisI GCNGC 2 cut(s) 100, 528
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 2 cut(s) 101, 529
BmcAI AGTACT 1 cut(s) 988
Bme1390I CCNGG 5 cut(s) 473, 697, 841, 1561, 1698
Bme18I GGWCC 1 cut(s) 792
BmeRI GACNNNNNGTC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 3 cut(s) 340, 792, 1500
BmiI GGNNCC 6 cut(s) 394, 582, 1482, 1516, 1581, 1695
BmrFI CCNGG 5 cut(s) 473, 697, 841, 1561, 1698
BmrI ACTGGG 2 cut(s) 149, 1520
BmsI GCATC 3 cut(s) 13, 849, 1634
BmuI ACTGGG 2 cut(s) 149, 1520
BpiI GAAGAC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 730, 762
BpmI CTGGAG 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 742
BpuEI CTTGAG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 82, 630, 798
BsaWI WCCGGW 1 cut(s) 1582
BsaXI ACNNNNNCTCC 4 cut(s) 1317, 1347, 1530, 1560
Bse118I RCCGGY 1 cut(s) 862
Bse1I ACTGG 3 cut(s) 144, 1503, 1515
Bse3DI GCAATG 2 cut(s) 248, 567
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 5 cut(s) 473, 697, 841, 1561, 1698
BseDI CCNNGG 3 cut(s) 82, 630, 798
BseGI GGATG 2 cut(s) 78, 355
BseJI GATNNNNATC 1 cut(s) 77
BseMI GCAATG 2 cut(s) 248, 567
BseMII CTCAG 3 cut(s) 331, 756, 1468
BseNI ACTGG 3 cut(s) 144, 1503, 1515
BseRI GAGGAG 2 cut(s) 110, 121
BseXI GCAGC 2 cut(s) 111, 514
BseYI CCCAGC 2 cut(s) 1433, 1592
BsgI GTGCAG 4 cut(s) 450, 462, 991, 1249
BshFI GGCC 5 cut(s) 341, 491, 635, 976, 1502
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 4 cut(s) 636, 770, 863, 1583
BsmAI GTCTC 3 cut(s) 45, 511, 1666
BsmI GAATGC 2 cut(s) 655, 892
BsnI GGCC 5 cut(s) 341, 491, 635, 976, 1502
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 743
Bsp143I GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
Bsp1720I GCTNAGC 1 cut(s) 742
Bsp19I CCATGG 2 cut(s) 82, 798
BspACI CCGC 6 cut(s) 447, 724, 795, 816, 1269, 1564
BspANI GGCC 5 cut(s) 341, 491, 635, 976, 1502
BspCNI CTCAG 3 cut(s) 330, 755, 1467
BspLI GGNNCC 6 cut(s) 394, 582, 1482, 1516, 1581, 1695
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 1 cut(s) 1055
BspT107I GGYRCC 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 248, 567
BsrFI RCCGGY 1 cut(s) 862
BsrI ACTGG 3 cut(s) 144, 1503, 1515
BssAI RCCGGY 1 cut(s) 862
BssECI CCNNGG 3 cut(s) 82, 630, 798
BssMI GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
BssSI CACGAG 2 cut(s) 540, 1370
BssT1I CCWWGG 3 cut(s) 82, 630, 798
Bst2BI CACGAG 2 cut(s) 540, 1370
Bst2UI CCWGG 5 cut(s) 473, 697, 841, 1561, 1698
Bst4CI ACNGT 2 cut(s) 781, 1638
BstC8I GCNNGC 5 cut(s) 445, 469, 558, 974, 1315
BstDEI CTNAG 3 cut(s) 317, 742, 1454
BstDSI CCRYGG 2 cut(s) 82, 798
BstF5I GGATG 2 cut(s) 78, 355
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 9 cut(s) 265, 711, 928, 982, 996, 1050, 1420, 1543, 1656
BstMAI GTCTC 3 cut(s) 45, 511, 1666
BstMBI GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
BstMWI GCNNNNNNNGC 5 cut(s) 115, 440, 896, 1310, 1480
BstNI CCWGG 5 cut(s) 473, 697, 841, 1561, 1698
BstNSI RCATGY 5 cut(s) 922, 1014, 1084, 1117, 1474
BstSCI CCNGG 5 cut(s) 471, 695, 839, 1559, 1696
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 111, 514
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 1540
BstXI CCANNNNNNTGG 2 cut(s) 196, 1510
BstYI RGATCY 1 cut(s) 1540
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 5 cut(s) 341, 491, 635, 976, 1502
BtgI CCRYGG 2 cut(s) 82, 798
BtsCI GGATG 2 cut(s) 78, 355
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 4 cut(s) 711, 786, 1003, 1643
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 5 cut(s) 445, 469, 558, 974, 1315
CaiI CAGNNNCTG 1 cut(s) 1823
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 1 cut(s) 862
Cfr13I GGNCC 3 cut(s) 340, 792, 1500
CseI GACGC 2 cut(s) 254, 388
Csp6I GTAC 4 cut(s) 987, 1001, 1014, 1088
CviQI GTAC 4 cut(s) 987, 1001, 1014, 1088
DdeI CTNAG 3 cut(s) 317, 742, 1454
DpnI GATC 9 cut(s) 264, 710, 927, 981, 995, 1049, 1419, 1542, 1655
DpnII GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
DraI TTTAAA 1 cut(s) 1800
DriI GACNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 489
Eam1105I GACNNNNNGTC 1 cut(s) 37
EciI GGCGGA 1 cut(s) 1579
Ecl136II GAGCTC 1 cut(s) 741
Eco130I CCWWGG 3 cut(s) 82, 630, 798
Eco147I AGGCCT 1 cut(s) 976
Eco24I GRGCYC 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 792
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 340
EcoRI GAATTC 2 cut(s) 514, 700
EcoRII CCWGG 5 cut(s) 471, 695, 839, 1559, 1696
EcoT14I CCWWGG 3 cut(s) 82, 630, 798
EcoT22I ATGCAT 2 cut(s) 6, 1476
EcoT38I GRGCYC 1 cut(s) 743
ErhI CCWWGG 3 cut(s) 82, 630, 798
FbaI TGATCA 4 cut(s) 708, 925, 979, 993
FblI GTMKAC 4 cut(s) 243, 258, 1335, 1507
Fnu4HI GCNGC 2 cut(s) 100, 528
FokI GGATG 2 cut(s) 65, 362
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 2 cut(s) 100, 528
FspBI CTAG 3 cut(s) 1211, 1424, 1607
GlaI GCGC 1 cut(s) 654
GluI GCNGC 2 cut(s) 100, 528
GsaI CCCAGC 2 cut(s) 1437, 1596
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 5 cut(s) 341, 491, 635, 976, 1502
HapII CCGG 4 cut(s) 636, 770, 863, 1583
HgaI GACGC 2 cut(s) 254, 388
HhaI GCGC 1 cut(s) 655
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 7 cut(s) 255, 329, 538, 833, 1052, 1525, 1550
HpaII CCGG 4 cut(s) 636, 770, 863, 1583
HphI GGTGA 2 cut(s) 380, 743
Hpy166II GTNNAC 5 cut(s) 244, 259, 1001, 1336, 1508
Hpy188I TCNGA 8 cut(s) 45, 72, 411, 858, 984, 1362, 1634, 1825
Hpy188III TCNNGA 2 cut(s) 807, 1031
Hpy8I GTNNAC 5 cut(s) 244, 259, 1001, 1336, 1508
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 781, 1638
HpyCH4IV ACGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 440, 896, 1310, 1480
HpyF3I CTNAG 3 cut(s) 317, 742, 1454
HpySE526I ACGT 1 cut(s) 275
HspAI GCGC 1 cut(s) 653
Ksp22I TGATCA 4 cut(s) 708, 925, 979, 993
Kzo9I GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
LmnI GCTCC 4 cut(s) 123, 188, 398, 1480
Lsp1109I GCAGC 2 cut(s) 111, 514
LweI GCATC 3 cut(s) 13, 849, 1634
MaeI CTAG 3 cut(s) 1211, 1424, 1607
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 368, 598, 1555
MalI GATC 9 cut(s) 264, 710, 927, 981, 995, 1049, 1419, 1542, 1655
MboI GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
MboII GAAGA 7 cut(s) 140, 283, 305, 598, 601, 1412, 1457
MflI RGATCY 1 cut(s) 1540
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 9 cut(s) 514, 700, 1182, 1350, 1494, 1615, 1736, 1776, 1792
MlyI GAGTC 4 cut(s) 264, 532, 1061, 1559
MmeI TCCRAC 2 cut(s) 1422, 1612
MnlI CCTC 9 cut(s) 131, 142, 331, 340, 558, 661, 1319, 1333, 1756
Mph1103I ATGCAT 2 cut(s) 6, 1476
MroXI GAANNNNTTC 2 cut(s) 848, 1692
MseI TTAA 7 cut(s) 278, 867, 1062, 1218, 1265, 1601, 1799
MslI CAYNNNNRTG 1 cut(s) 1533
MspI CCGG 4 cut(s) 636, 770, 863, 1583
MspR9I CCNGG 5 cut(s) 473, 697, 841, 1561, 1698
Mva1269I GAATGC 2 cut(s) 655, 892
MvaI CCWGG 5 cut(s) 473, 697, 841, 1561, 1698
MwoI GCNNNNNNNGC 5 cut(s) 115, 440, 896, 1310, 1480
NcoI CCATGG 2 cut(s) 82, 798
NdeII GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
NlaIV GGNNCC 6 cut(s) 394, 582, 1482, 1516, 1581, 1695
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 2 cut(s) 368, 598
NsiI ATGCAT 2 cut(s) 6, 1476
NspI RCATGY 5 cut(s) 922, 1014, 1084, 1117, 1474
PceI AGGCCT 1 cut(s) 976
PciI ACATGT 3 cut(s) 918, 1080, 1113
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 2 cut(s) 655, 892
PdmI GAANNNNTTC 2 cut(s) 848, 1692
PfeI GAWTC 3 cut(s) 329, 833, 1525
PflFI GACNNNGTC 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 2 cut(s) 101, 529
PleI GAGTC 4 cut(s) 263, 532, 1060, 1558
PpsI GAGTC 4 cut(s) 263, 532, 1060, 1558
PscI ACATGT 3 cut(s) 918, 1080, 1113
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 5 cut(s) 471, 695, 839, 1559, 1696
PspFI CCCAGC 2 cut(s) 1433, 1592
PspGI CCWGG 5 cut(s) 471, 695, 839, 1559, 1696
PspN4I GGNNCC 6 cut(s) 394, 582, 1482, 1516, 1581, 1695
PspPI GGNCC 3 cut(s) 340, 792, 1500
PstI CTGCAG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 1823
PsuI RGATCY 1 cut(s) 1540
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 4 cut(s) 988, 1002, 1015, 1089
RsaNI GTAC 4 cut(s) 987, 1001, 1014, 1088
RseI CAYNNNNRTG 1 cut(s) 1533
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 7 cut(s) 278, 867, 1062, 1218, 1265, 1601, 1799
SatI GCNGC 2 cut(s) 100, 528
Sau3AI GATC 9 cut(s) 262, 708, 925, 979, 993, 1047, 1417, 1540, 1653
Sau96I GGNCC 3 cut(s) 340, 792, 1500
SbfI CCTGCAGG 1 cut(s) 30
ScaI AGTACT 1 cut(s) 988
SchI GAGTC 4 cut(s) 264, 532, 1061, 1559
ScrFI CCNGG 5 cut(s) 473, 697, 841, 1561, 1698
SdaI CCTGCAGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 3 cut(s) 13, 849, 1634
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 1 cut(s) 792
SmiMI CAYNNNNRTG 1 cut(s) 1533
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse8387I CCTGCAGG 1 cut(s) 30
Sse9I AATT 9 cut(s) 514, 700, 1182, 1350, 1494, 1615, 1736, 1776, 1792
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 6 cut(s) 447, 724, 795, 816, 1269, 1564
SspMI CTAG 3 cut(s) 1211, 1424, 1607
SstI GAGCTC 1 cut(s) 743
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 5 cut(s) 471, 695, 839, 1559, 1696
StyI CCWWGG 3 cut(s) 82, 630, 798
TaaI ACNGT 2 cut(s) 781, 1638
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 1050
TasI AATT 9 cut(s) 514, 700, 1182, 1350, 1494, 1615, 1736, 1776, 1792
TatI WGTACW 3 cut(s) 986, 1000, 1013
TfiI GAWTC 3 cut(s) 329, 833, 1525
Tru1I TTAA 7 cut(s) 278, 867, 1062, 1218, 1265, 1601, 1799
Tru9I TTAA 7 cut(s) 278, 867, 1062, 1218, 1265, 1601, 1799
TscAI CASTG 4 cut(s) 718, 786, 1003, 1643
TseFI GTSAC 2 cut(s) 368, 598
TseI GCWGC 2 cut(s) 99, 527
Tsp45I GTSAC 2 cut(s) 368, 598
TspGWI ACGGA 1 cut(s) 935
TspRI CASTG 4 cut(s) 718, 786, 1003, 1643
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 792
XapI RAATTY 4 cut(s) 514, 700, 1736, 1776
XceI RCATGY 5 cut(s) 922, 1014, 1084, 1117, 1474
XmiI GTMKAC 4 cut(s) 243, 258, 1335, 1507
XmnI GAANNNNTTC 2 cut(s) 848, 1692
XspI CTAG 3 cut(s) 1211, 1424, 1607
ZrmI AGTACT 1 cut(s) 988
Zsp2I ATGCAT 2 cut(s) 6, 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.