Rmu_co8455877.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8455877.1
OG0015541
Physical Location & Seq
Forward (+)
119 .. 1687
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8455877.1_g000001.1.cds

Sequence Viewer

Length: 1569 bp
atgaagacgttaaggattgtgccgaatggttatactttcacttttcttctcaggtgttttgaatcttttgaggcccttgaggatgggaaagtggttcatggtgacattgtcaagcttggtttgggctccagcgtctttgttcagaacacccttttggatttctacgccaaatgtgcaggcggttttgagtttggttctgcacgccaggtgtttgatgaaatggccgagagagatgtggtctcttggaattccatgattgctgcttacatgactcgtggtaggatagagcctgcaatgaggttgtttcattcggtgccgaagaagaacattgtgacatggaactctgttgtttctggtctttccaaggccggaaacatggagttagcgcattcggtttttgaggaaatgccagaaagaaatgatgtttcctggaattcattgatcactgcttatatgcggttgggtgatatgagctcagctcgttgtttgtttgaacaaatgccggagaaaacagtggtttcttggacggccatggtgtctggatacaccgccattggagatgttgaatcagccagtaacttgttcagtcagatgccggttaaaaatgttgtatcgtggaatgctatgattgcaggttatgttcataaccacatgtttgatcaagctctttctgttttccgcaagatgttgatagatggcaagtgcaggcctgatcagagtactttgatcagtgtactatcggcatgtactcacttgggttctcttgaacatggaaaatggatcgagtcttatattaagagaaacaagttagacatgtctgtacctttaggaaatgctctaatagacatgtatgcaaagtgtggagatgtagaaaatgcaaaagctgtttttgatgagatggaacaaagatgtataattacatggacgacaatggtttcaggtctagctgttaatgggtggtgcagggaagcattagctctctttgaaacaatgtgtttaagcggacataaaccagatgatgtgattttcattgcggctctatcagcttgcactcatggagggctggtagacgagggcaaaataattttttatcagatggaacacgagtttgacatcaagccccgaatagagcattttgggtgcatggttgatcttctaggtagagctgggaagttggaagaagcactcaggtttgtagaaaacatgcatttggagccaaatgctgtaatttgggctagtctactgggttcctgtaagattcatggaaatggagatctggtggagtctgtaaccaggcggattatagagcaggaaccggaaaatcccagctatttaactctagtttccaatttgagtgcatcagtcggacagtggaaagatgtgctgatctatcggcaagttatgagacaacaggggatagaaaaggttcctggttgtagctcaatccaaatggggaacaagatagatgagtttcttgcccatgatacaagacatgaggaaagaaaagaaatttatggagttttgaattgtttaaatgaacaggtgtcagcagtttctgatgggctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

522

Amino Acids

58.36

Weight (kDa)

5.52

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015541)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14810
malus_domestica MD14G1026500.v1.1
prunus_persica Prupe.8G017600_v2.0.a1
pyrus_communis pycom14g02530
rosa_chinensis RchiOBHm_Chr6g0277401
rosa_laevigata RLG00000013305
rosa_multiflora Rmu_co8455877.1_g000001 Rmu_sc0000030.1_g000006 Rmu_sc0004888.1_g000004
rosa_roxburghii Rroxscaffold_7G00191380
rosa_rugosa Rorug06G0107800 Rorug06G0107800 Rorug06G0107800 Rorug06G0107900
rosa_samantha Rh6DG215400
rosa_wichuraiana Rw6G019160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 313
AccI GTMKAC 2 cut(s) 1068, 1240
AciI CCGC 7 cut(s) 180, 457, 549, 679, 1002, 1034, 1297
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 2 cut(s) 222, 528
AcsI RAATTY 3 cut(s) 247, 433, 1509
AfaI GTAC 4 cut(s) 721, 735, 748, 822
AflIII ACRYGT 3 cut(s) 651, 813, 846
AgsI TTSAA 6 cut(s) 62, 494, 566, 767, 986, 1525
AjnI CCWGG 4 cut(s) 204, 428, 1292, 1429
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 2 cut(s) 244, 1399
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 1 cut(s) 1556
AoxI GGCC 5 cut(s) 72, 222, 366, 528, 707
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 3 cut(s) 247, 433, 1509
Asp700I GAANNNNTTC 1 cut(s) 1425
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 113, 476
BanI GGYRCC 1 cut(s) 313
BanII GRGCYC 2 cut(s) 128, 476
BauI CACGAG 2 cut(s) 273, 1103
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 247
BccI CCATC 5 cut(s) 77, 689, 892, 1090, 1553
BceAI ACGGC 1 cut(s) 543
BciT130I CCWGG 4 cut(s) 206, 430, 1294, 1431
BciVI GTATCC 1 cut(s) 536
BclI TGATCA 4 cut(s) 441, 658, 712, 726
BcoDI GTCTC 2 cut(s) 244, 1399
BfaI CTAG 4 cut(s) 944, 1157, 1236, 1340
BfuAI ACCTGC 1 cut(s) 623
BfuI GTATCC 1 cut(s) 536
BglII AGATCT 1 cut(s) 1273
BisI GCNGC 2 cut(s) 261, 1035
BlpI GCTNAGC 1 cut(s) 475
BlsI GCNGC 2 cut(s) 262, 1036
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 4 cut(s) 206, 430, 1294, 1431
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 6 cut(s) 127, 315, 1215, 1249, 1314, 1428
BmrFI CCNGG 4 cut(s) 206, 430, 1294, 1431
BmrI ACTGGG 1 cut(s) 1253
BmsI GCATC 2 cut(s) 582, 1367
BmuI ACTGGG 1 cut(s) 1253
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 112
Bpu1102I GCTNAGC 1 cut(s) 475
BpuEI CTTGAG 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 363, 531
BsaWI WCCGGW 1 cut(s) 1315
BsaXI ACNNNNNCTCC 4 cut(s) 1050, 1080, 1263, 1293
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 573, 1248
Bse3DI GCAATG 2 cut(s) 300, 1029
BseBI CCWGG 4 cut(s) 206, 430, 1294, 1431
BseDI CCNNGG 2 cut(s) 363, 531
BseGI GGATG 1 cut(s) 88
BseMI GCAATG 2 cut(s) 300, 1029
BseMII CTCAG 3 cut(s) 64, 489, 1201
BseNI ACTGG 2 cut(s) 573, 1248
BseXI GCAGC 1 cut(s) 247
BseYI CCCAGC 2 cut(s) 1166, 1325
BsgI GTGCAG 4 cut(s) 183, 195, 724, 982
BshFI GGCC 5 cut(s) 74, 224, 368, 530, 709
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 4 cut(s) 369, 503, 596, 1316
BsmAI GTCTC 2 cut(s) 244, 1399
BsmI GAATGC 2 cut(s) 388, 625
BsnI GGCC 5 cut(s) 74, 224, 368, 530, 709
Bso31I GGTCTC 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 128, 476
Bsp143I GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
Bsp1720I GCTNAGC 1 cut(s) 475
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 7 cut(s) 180, 457, 549, 679, 1002, 1034, 1297
BspANI GGCC 5 cut(s) 74, 224, 368, 530, 709
BspCNI CTCAG 3 cut(s) 63, 488, 1200
BspLI GGNNCC 6 cut(s) 127, 315, 1215, 1249, 1314, 1428
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 244
BsrDI GCAATG 2 cut(s) 300, 1029
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 2 cut(s) 573, 1248
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 363, 531
BssMI GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
BssSI CACGAG 2 cut(s) 273, 1103
BssT1I CCWWGG 2 cut(s) 363, 531
Bst2BI CACGAG 2 cut(s) 273, 1103
Bst2UI CCWGG 4 cut(s) 206, 430, 1294, 1431
Bst4CI ACNGT 2 cut(s) 514, 1371
BstC8I GCNNGC 5 cut(s) 178, 202, 291, 707, 1048
BstDEI CTNAG 3 cut(s) 50, 475, 1187
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 8 cut(s) 444, 661, 715, 729, 783, 1153, 1276, 1389
BstMAI GTCTC 2 cut(s) 244, 1399
BstMBI GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
BstMWI GCNNNNNNNGC 4 cut(s) 173, 629, 1043, 1213
BstNI CCWGG 4 cut(s) 206, 430, 1294, 1431
BstNSI RCATGY 5 cut(s) 655, 747, 817, 850, 1207
BstSCI CCNGG 4 cut(s) 204, 428, 1292, 1429
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 1273
BstYI RGATCY 1 cut(s) 1273
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 5 cut(s) 74, 224, 368, 530, 709
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 4 cut(s) 444, 519, 736, 1376
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 5 cut(s) 178, 202, 291, 707, 1048
CaiI CAGNNNCTG 1 cut(s) 1556
CfoI GCGC 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 1 cut(s) 121
Csp6I GTAC 4 cut(s) 720, 734, 747, 821
CviQI GTAC 4 cut(s) 720, 734, 747, 821
DdeI CTNAG 3 cut(s) 50, 475, 1187
DpnI GATC 8 cut(s) 443, 660, 714, 728, 782, 1152, 1275, 1388
DpnII GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
DraI TTTAAA 1 cut(s) 1533
EaeI YGGCCR 2 cut(s) 222, 528
EciI GGCGGA 1 cut(s) 1312
Ecl136II GAGCTC 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 363, 531
Eco147I AGGCCT 1 cut(s) 709
Eco24I GRGCYC 2 cut(s) 128, 476
Eco31I GGTCTC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 73
EcoRI GAATTC 2 cut(s) 247, 433
EcoRII CCWGG 4 cut(s) 204, 428, 1292, 1429
EcoT14I CCWWGG 2 cut(s) 363, 531
EcoT22I ATGCAT 1 cut(s) 1209
EcoT38I GRGCYC 2 cut(s) 128, 476
ErhI CCWWGG 2 cut(s) 363, 531
FbaI TGATCA 4 cut(s) 441, 658, 712, 726
FblI GTMKAC 2 cut(s) 1068, 1240
Fnu4HI GCNGC 2 cut(s) 261, 1035
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 2 cut(s) 128, 476
Fsp4HI GCNGC 2 cut(s) 261, 1035
FspBI CTAG 4 cut(s) 944, 1157, 1236, 1340
GlaI GCGC 1 cut(s) 387
GluI GCNGC 2 cut(s) 261, 1035
GsaI CCCAGC 2 cut(s) 1170, 1329
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 5 cut(s) 74, 224, 368, 530, 709
HapII CCGG 4 cut(s) 369, 503, 596, 1316
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 388
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 6 cut(s) 62, 271, 566, 785, 1258, 1283
HpaII CCGG 4 cut(s) 369, 503, 596, 1316
HphI GGTGA 2 cut(s) 113, 476
Hpy166II GTNNAC 3 cut(s) 734, 1069, 1241
Hpy188I TCNGA 6 cut(s) 144, 591, 717, 1095, 1367, 1558
Hpy188III TCNNGA 2 cut(s) 540, 764
Hpy8I GTNNAC 3 cut(s) 734, 1069, 1241
HpyCH4III ACNGT 2 cut(s) 514, 1371
HpyCH4IV ACGT 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 629, 1043, 1213
HpyF3I CTNAG 3 cut(s) 50, 475, 1187
HpySE526I ACGT 1 cut(s) 8
HspAI GCGC 1 cut(s) 386
Ksp22I TGATCA 4 cut(s) 441, 658, 712, 726
Kzo9I GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
LmnI GCTCC 2 cut(s) 131, 1213
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 582, 1367
MaeI CTAG 4 cut(s) 944, 1157, 1236, 1340
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 4 cut(s) 101, 331, 575, 1288
MalI GATC 8 cut(s) 443, 660, 714, 728, 782, 1152, 1275, 1388
MboI GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
MboII GAAGA 6 cut(s) 16, 38, 331, 334, 1145, 1190
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 2 cut(s) 128, 476
MluCI AATT 8 cut(s) 247, 433, 915, 1083, 1227, 1348, 1509, 1525
MlyI GAGTC 3 cut(s) 265, 794, 1292
MmeI TCCRAC 2 cut(s) 1155, 1345
MnlI CCTC 7 cut(s) 64, 73, 291, 394, 1052, 1066, 1489
Mph1103I ATGCAT 1 cut(s) 1209
MroXI GAANNNNTTC 1 cut(s) 1425
MseI TTAA 7 cut(s) 11, 600, 795, 951, 998, 1334, 1532
MslI CAYNNNNRTG 1 cut(s) 1266
MspI CCGG 4 cut(s) 369, 503, 596, 1316
MspR9I CCNGG 4 cut(s) 206, 430, 1294, 1431
Mva1269I GAATGC 2 cut(s) 388, 625
MvaI CCWGG 4 cut(s) 206, 430, 1294, 1431
MwoI GCNNNNNNNGC 4 cut(s) 173, 629, 1043, 1213
NcoI CCATGG 1 cut(s) 531
NdeII GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
NlaIV GGNNCC 6 cut(s) 127, 315, 1215, 1249, 1314, 1428
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 101, 331
NsiI ATGCAT 1 cut(s) 1209
NspI RCATGY 5 cut(s) 655, 747, 817, 850, 1207
PceI AGGCCT 1 cut(s) 709
PciI ACATGT 3 cut(s) 651, 813, 846
PctI GAATGC 2 cut(s) 388, 625
PdmI GAANNNNTTC 1 cut(s) 1425
PfeI GAWTC 3 cut(s) 62, 566, 1258
PflFI GACNNNGTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 2 cut(s) 262, 1036
PleI GAGTC 3 cut(s) 265, 793, 1291
PpsI GAGTC 3 cut(s) 265, 793, 1291
PscI ACATGT 3 cut(s) 651, 813, 846
Psp124BI GAGCTC 1 cut(s) 476
Psp6I CCWGG 4 cut(s) 204, 428, 1292, 1429
PspFI CCCAGC 2 cut(s) 1166, 1325
PspGI CCWGG 4 cut(s) 204, 428, 1292, 1429
PspN4I GGNNCC 6 cut(s) 127, 315, 1215, 1249, 1314, 1428
PspPI GGNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 1556
PsuI RGATCY 1 cut(s) 1273
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 4 cut(s) 721, 735, 748, 822
RsaNI GTAC 4 cut(s) 720, 734, 747, 821
RseI CAYNNNNRTG 1 cut(s) 1266
SacI GAGCTC 1 cut(s) 476
SaqAI TTAA 7 cut(s) 11, 600, 795, 951, 998, 1334, 1532
SatI GCNGC 2 cut(s) 261, 1035
Sau3AI GATC 8 cut(s) 441, 658, 712, 726, 780, 1150, 1273, 1386
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 721
SchI GAGTC 3 cut(s) 265, 794, 1292
ScrFI CCNGG 4 cut(s) 206, 430, 1294, 1431
SduI GDGCHC 2 cut(s) 128, 476
SfaNI GCATC 2 cut(s) 582, 1367
SmiMI CAYNNNNRTG 1 cut(s) 1266
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 8 cut(s) 247, 433, 915, 1083, 1227, 1348, 1509, 1525
SseBI AGGCCT 1 cut(s) 709
SsiI CCGC 7 cut(s) 180, 457, 549, 679, 1002, 1034, 1297
SspMI CTAG 4 cut(s) 944, 1157, 1236, 1340
SstI GAGCTC 1 cut(s) 476
StuI AGGCCT 1 cut(s) 709
StyD4I CCNGG 4 cut(s) 204, 428, 1292, 1429
StyI CCWWGG 2 cut(s) 363, 531
TaaI ACNGT 2 cut(s) 514, 1371
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 783
TasI AATT 8 cut(s) 247, 433, 915, 1083, 1227, 1348, 1509, 1525
TatI WGTACW 3 cut(s) 719, 733, 746
TauI GCSGC 1 cut(s) 1037
TfiI GAWTC 3 cut(s) 62, 566, 1258
Tru1I TTAA 7 cut(s) 11, 600, 795, 951, 998, 1334, 1532
Tru9I TTAA 7 cut(s) 11, 600, 795, 951, 998, 1334, 1532
TscAI CASTG 4 cut(s) 451, 519, 736, 1376
TseFI GTSAC 2 cut(s) 101, 331
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 101, 331
TspDTI ATGAA 9 cut(s) 17, 86, 231, 296, 426, 632, 1018, 1250, 1551
TspRI CASTG 4 cut(s) 451, 519, 736, 1376
Tth111I GACNNNGTC 1 cut(s) 107
XapI RAATTY 3 cut(s) 247, 433, 1509
XceI RCATGY 5 cut(s) 655, 747, 817, 850, 1207
XmiI GTMKAC 2 cut(s) 1068, 1240
XmnI GAANNNNTTC 1 cut(s) 1425
XspI CTAG 4 cut(s) 944, 1157, 1236, 1340
ZrmI AGTACT 1 cut(s) 721
Zsp2I ATGCAT 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.