RLG00000013305

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015541
Physical Location & Seq
Reverse (-)
29491718 .. 29493553
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013305

Sequence Viewer

Length: 1836 bp
ATGGATCAAAAACTGCTGAAAATCTTGCAGGACTGCAAGTCTCTGAAACAACTGAAACAGACACACCTTCAGATATTCATCCATGGACTACATCACAGCAGCTTTTTGCTTCCCAAGCTCCTCACTCTCTCCTCACAACTGGGTTTTCTTCATTACGCTTATTCCATTTTCCAAACTTGTTGCTCCCCCAATGTTGTGGCTTACAACGCAATCATAAAATGCTTCATAGGAAAGACCCGAGTAGACGCATTGCGAGTCTACGATCAAATGAAGACGTTAAGGATTGTGCCGAATAGTTATACTTTCACTTTTCTTCTCAGGTGTTTGGAATCTTTTGAGGCCCTTGATGATGGGAAAGTGGTTCATGGCGACATTGTCAAGCTTGGTTTCGGCTCCAGCGTCTTTGTTCAGAACACCCTTTTGGATTTCTACGCGAAATGTGCCGGCGGTTTTGAGTTTGGTTCCGCACGCCAGGTGTTTGATGAAATGGCTGAGAGAGATGTGGTCTCTTGGAATTCCATGATTGCTGCTTACATGACTTGTGGTAGGATAGAGCCTGCAATGAGGTTGTTTCATTCGGTGCCGAAGAAGAACATTGTGACATGGAACTCTGTTGTTTGTGGTCTTTCTAAGGCCGGAAACATGGAGTTAGCGCATTCGGTTTTTGAGAAAATGCCAGAAAGAAATGATGTTTCCTGGAATTCATTAATAACTGCTTATATACGGTTGGGTGATATGAGCTCAGCTCAGTGTCTGTTTGAACAAATGCCGGAGAAAACAGTGGTTTCTTGGACCGCCATGGTGTCTGGATACACCGCCATTGGAGATGTTGAATCAGCCAGGAACATGTTCAGTCAGATGCCGGTTAAAAATGTTGTATCCTGGAATGCTATGATTGCAGGTTATGTTCATAACCACATGTTTGATCAAGCTCTTTCTGTTTTCCGCAAGATGTTGATAGATGGCAAGTGCAGGCCTGATCAGGGTACTTTGATCAGTGTACTATCGGCATGTACTCACTTGGGTTCTCTTGAACATGGAAAATGGATCGAGTCTTATATTAAGAGAAACAAGTTTGACATGTCTGTACCTTTAGGAAATGCTCTAATAGACATGTATGCAAAATGTGGAGATGTAGGAAATGCAAAAGCTGTTTTTGATGAGATGGAACAAAGATGTATAATTACATGGACTACAATGGTTTCAGGTCTAGCTGTTAATGGGTGGTGCAGGGAAGCATTAGCTCTCTTTGAAACAATGTGTTTAAGCGGACATAAACCAGATGATGTGATTTTCATTGCGGGTCTATCAGCTTGCACTCATGGAGGGCTGGTAGACGAGGGCAAAAGAATTTTTTATCAGATGGAACACGAGTTTGACATCAAGCCCCGAATAGAGCATTATGGGTGCATGGTTGATCTTCTAGGTAGAGCTGGGAAGTTGGAAGAAGCACTCAGGTTTGTAGAAAACATGCATTTGGAGCCAAATGCTGTAATTTGGGCCAGTCTACTGGGTTCCTGTAAGATTCATGGAGATGGAGATCTGGTGGAGTCTGTAGCCAGGCGGATTATAGAGCAGGAACCAGAAAATCCCAGCTATTTAACTCTAGTTTCCAATTTGAGTGCATCAGTCGGACAGTGGAAAGATGTGCTGATCTATCGGCAAGTTATGAGACAACAGGGGATAGAAAAGGTTCCTGGTTGTAGCTCAATCCAAATGGGGACCAAGATAGATGAGTTTCTTGCCCACGATACAAGACATGAGGAAAGAAAAGAAATTTATGGAGTTTTGAATTGTTTAAATGAACAGGTGTCAGCAGTTTCTGATGGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

612

Amino Acids

68.53

Weight (kDa)

6.29

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 63 - 109 9e-11 PPR repeat family
PPR_2 PF13041 166 - 199 3.5e-06 PPR repeat family
PPR_2 PF13041 197 - 229 1.7e-06 PPR repeat family
PPR PF01535 200 - 229 8.2e-07 PPR repeat
PPR PF01535 231 - 259 5.1e-06 PPR repeat
PPR_2 PF13041 290 - 338 3e-08 PPR repeat family
PPR PF01535 293 - 321 1.2e-06 PPR repeat
PPR PF01535 395 - 424 7e-06 PPR repeat
E_motif PF20431 511 - 572 5.3e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015541)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14810
malus_domestica MD14G1026500.v1.1
prunus_persica Prupe.8G017600_v2.0.a1
pyrus_communis pycom14g02530
rosa_chinensis RchiOBHm_Chr6g0277401
rosa_laevigata RLG00000013305
rosa_multiflora Rmu_co8455877.1_g000001 Rmu_sc0000030.1_g000006 Rmu_sc0004888.1_g000004
rosa_roxburghii Rroxscaffold_7G00191380
rosa_rugosa Rorug06G0107800 Rorug06G0107800 Rorug06G0107800 Rorug06G0107900
rosa_samantha Rh6DG215400
rosa_wichuraiana Rw6G019160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 890
AccB1I GGYRCC 1 cut(s) 580
AccI GTMKAC 4 cut(s) 243, 258, 1335, 1507
AccII CGCG 1 cut(s) 434
AciI CCGC 8 cut(s) 447, 465, 795, 816, 946, 1269, 1301, 1564
AclWI GGATC 2 cut(s) 12, 1055
AcsI RAATTY 4 cut(s) 514, 700, 1350, 1776
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 4 cut(s) 988, 1002, 1015, 1089
AfiI CCNNNNNNNGG 1 cut(s) 983
AflIII ACRYGT 4 cut(s) 846, 918, 1080, 1113
AgsI TTSAA 5 cut(s) 761, 833, 1034, 1253, 1792
AhdI GACNNNNNGTC 1 cut(s) 37
AjnI CCWGG 6 cut(s) 471, 695, 839, 881, 1559, 1696
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 3 cut(s) 45, 511, 1666
AlwI GGATC 2 cut(s) 12, 1055
AlwNI CAGNNNCTG 2 cut(s) 754, 1823
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 4 cut(s) 339, 633, 974, 1500
ApeKI GCWGC 2 cut(s) 99, 527
ApoI RAATTY 4 cut(s) 514, 700, 1350, 1776
AseI ATTAAT 1 cut(s) 707
Asp700I GAANNNNTTC 2 cut(s) 848, 1692
AspLEI GCGC 1 cut(s) 655
AspS9I GGNCC 4 cut(s) 340, 792, 1500, 1722
AsuHPI GGTGA 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 2 cut(s) 792, 1722
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 743
BauI CACGAG 1 cut(s) 1370
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 2 cut(s) 111, 514
BccI CCATC 6 cut(s) 344, 956, 1159, 1357, 1529, 1820
BciT130I CCWGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
BciVI GTATCC 2 cut(s) 803, 889
BclI TGATCA 3 cut(s) 925, 979, 993
BcoDI GTCTC 3 cut(s) 45, 511, 1666
BfaI CTAG 3 cut(s) 1211, 1424, 1607
BfmI CTRYAG 1 cut(s) 1554
BfuAI ACCTGC 1 cut(s) 890
BfuI GTATCC 2 cut(s) 803, 889
BglII AGATCT 1 cut(s) 1540
BisI GCNGC 2 cut(s) 100, 528
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 2 cut(s) 101, 529
Bme1390I CCNGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
Bme18I GGWCC 2 cut(s) 792, 1722
BmeRI GACNNNNNGTC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 4 cut(s) 340, 792, 1500, 1722
BmiI GGNNCC 8 cut(s) 394, 463, 582, 1482, 1516, 1581, 1695, 1723
BmrFI CCNGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
BmrI ACTGGG 2 cut(s) 149, 1520
BmsI GCATC 2 cut(s) 849, 1634
BmuI ACTGGG 2 cut(s) 149, 1520
BpiI GAAGAC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 730, 762
BpmI CTGGAG 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 742
BsaBI GATNNNNATC 2 cut(s) 77, 1539
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 2 cut(s) 82, 798
BsaXI ACNNNNNCTCC 4 cut(s) 1317, 1347, 1530, 1560
Bsc4I CCNNNNNNNGG 1 cut(s) 983
Bse118I RCCGGY 2 cut(s) 443, 862
Bse1I ACTGG 3 cut(s) 144, 1503, 1515
Bse3DI GCAATG 3 cut(s) 248, 567, 1296
Bse8I GATNNNNATC 2 cut(s) 77, 1539
BseBI CCWGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
BseDI CCNNGG 2 cut(s) 82, 798
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 2 cut(s) 77, 1539
BseLI CCNNNNNNNGG 1 cut(s) 983
BseMI GCAATG 3 cut(s) 248, 567, 1296
BseMII CTCAG 5 cut(s) 331, 483, 756, 761, 1468
BseNI ACTGG 3 cut(s) 144, 1503, 1515
BseRI GAGGAG 2 cut(s) 110, 121
BseXI GCAGC 2 cut(s) 111, 514
BseYI CCCAGC 2 cut(s) 1433, 1592
BsgI GTGCAG 2 cut(s) 991, 1249
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 4 cut(s) 341, 635, 976, 1502
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 4 cut(s) 444, 636, 770, 863
BslFI GGGAC 1 cut(s) 1735
BslI CCNNNNNNNGG 1 cut(s) 983
BsmAI GTCTC 3 cut(s) 45, 511, 1666
BsmFI GGGAC 1 cut(s) 1735
BsmI GAATGC 2 cut(s) 655, 892
BsnI GGCC 4 cut(s) 341, 635, 976, 1502
Bso31I GGTCTC 1 cut(s) 511
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 743
Bsp143I GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
Bsp1720I GCTNAGC 1 cut(s) 742
Bsp19I CCATGG 2 cut(s) 82, 798
BspACI CCGC 8 cut(s) 447, 465, 795, 816, 946, 1269, 1301, 1564
BspANI GGCC 4 cut(s) 341, 635, 976, 1502
BspCNI CTCAG 5 cut(s) 330, 484, 755, 760, 1467
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 8 cut(s) 394, 463, 582, 1482, 1516, 1581, 1695, 1723
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 2 cut(s) 12, 1055
BspT107I GGYRCC 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 511
BsrDI GCAATG 3 cut(s) 248, 567, 1296
BsrFI RCCGGY 2 cut(s) 443, 862
BsrI ACTGG 3 cut(s) 144, 1503, 1515
BssAI RCCGGY 2 cut(s) 443, 862
BssECI CCNNGG 2 cut(s) 82, 798
BssMI GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
BssSI CACGAG 1 cut(s) 1370
BssT1I CCWWGG 2 cut(s) 82, 798
Bst2BI CACGAG 1 cut(s) 1370
Bst2UI CCWGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
Bst4CI ACNGT 3 cut(s) 726, 781, 1638
BstC8I GCNNGC 5 cut(s) 445, 469, 558, 974, 1315
BstDEI CTNAG 6 cut(s) 317, 492, 630, 742, 747, 1454
BstDSI CCRYGG 2 cut(s) 82, 798
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 655
BstKTI GATC 9 cut(s) 7, 265, 928, 982, 996, 1050, 1420, 1543, 1656
BstMAI GTCTC 3 cut(s) 45, 511, 1666
BstMBI GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
BstMWI GCNNNNNNNGC 5 cut(s) 115, 206, 440, 896, 1480
BstNI CCWGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
BstNSI RCATGY 6 cut(s) 850, 922, 1014, 1084, 1117, 1474
BstSCI CCNGG 6 cut(s) 471, 695, 839, 881, 1559, 1696
BstSFI CTRYAG 1 cut(s) 1554
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 111, 514
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 1540
BstXI CCANNNNNNTGG 2 cut(s) 196, 1510
BstYI RGATCY 1 cut(s) 1540
BsuI GTATCC 2 cut(s) 803, 889
BsuRI GGCC 4 cut(s) 341, 635, 976, 1502
BtgI CCRYGG 2 cut(s) 82, 798
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 4 cut(s) 755, 786, 1003, 1643
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 5 cut(s) 445, 469, 558, 974, 1315
CaiI CAGNNNCTG 2 cut(s) 754, 1823
CfoI GCGC 1 cut(s) 655
Cfr10I RCCGGY 2 cut(s) 443, 862
Cfr13I GGNCC 4 cut(s) 340, 792, 1500, 1722
CseI GACGC 2 cut(s) 254, 388
Csp6I GTAC 4 cut(s) 987, 1001, 1014, 1088
CviQI GTAC 4 cut(s) 987, 1001, 1014, 1088
DdeI CTNAG 6 cut(s) 317, 492, 630, 742, 747, 1454
DpnI GATC 9 cut(s) 6, 264, 927, 981, 995, 1049, 1419, 1542, 1655
DpnII GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
DraI TTTAAA 1 cut(s) 1800
DriI GACNNNNNGTC 1 cut(s) 37
Eam1105I GACNNNNNGTC 1 cut(s) 37
EciI GGCGGA 1 cut(s) 1579
Ecl136II GAGCTC 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 82, 798
Eco147I AGGCCT 1 cut(s) 976
Eco24I GRGCYC 1 cut(s) 743
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 2 cut(s) 792, 1722
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 340
EcoRI GAATTC 2 cut(s) 514, 700
EcoRII CCWGG 6 cut(s) 471, 695, 839, 881, 1559, 1696
EcoT14I CCWWGG 2 cut(s) 82, 798
EcoT22I ATGCAT 1 cut(s) 1476
EcoT38I GRGCYC 1 cut(s) 743
ErhI CCWWGG 2 cut(s) 82, 798
FaqI GGGAC 1 cut(s) 1735
FauI CCCGC 1 cut(s) 1294
FbaI TGATCA 3 cut(s) 925, 979, 993
FblI GTMKAC 4 cut(s) 243, 258, 1335, 1507
Fnu4HI GCNGC 2 cut(s) 100, 528
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 2 cut(s) 100, 528
FspBI CTAG 3 cut(s) 1211, 1424, 1607
GlaI GCGC 1 cut(s) 654
GluI GCNGC 2 cut(s) 100, 528
GsaI CCCAGC 2 cut(s) 1437, 1596
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 4 cut(s) 341, 635, 976, 1502
HapII CCGG 4 cut(s) 444, 636, 770, 863
HgaI GACGC 2 cut(s) 254, 388
HhaI GCGC 1 cut(s) 655
Hin6I GCGC 1 cut(s) 653
HinP1I GCGC 1 cut(s) 653
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 6 cut(s) 255, 329, 833, 1052, 1525, 1550
HpaII CCGG 4 cut(s) 444, 636, 770, 863
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 5 cut(s) 244, 259, 1001, 1336, 1508
Hpy188I TCNGA 7 cut(s) 45, 72, 411, 858, 1362, 1634, 1825
Hpy188III TCNNGA 2 cut(s) 807, 1031
Hpy8I GTNNAC 5 cut(s) 244, 259, 1001, 1336, 1508
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 3 cut(s) 726, 781, 1638
HpyCH4IV ACGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 206, 440, 896, 1480
HpyF3I CTNAG 6 cut(s) 317, 492, 630, 742, 747, 1454
HpySE526I ACGT 1 cut(s) 275
HspAI GCGC 1 cut(s) 653
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Ksp22I TGATCA 3 cut(s) 925, 979, 993
Kzo9I GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
LmnI GCTCC 4 cut(s) 123, 188, 398, 1480
Lsp1109I GCAGC 2 cut(s) 111, 514
LweI GCATC 2 cut(s) 849, 1634
MaeI CTAG 3 cut(s) 1211, 1424, 1607
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 598
MalI GATC 9 cut(s) 6, 264, 927, 981, 995, 1049, 1419, 1542, 1655
MboI GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
MboII GAAGA 7 cut(s) 140, 283, 305, 598, 601, 1412, 1457
MflI RGATCY 1 cut(s) 1540
MhlI GDGCHC 1 cut(s) 743
MluCI AATT 8 cut(s) 514, 700, 1182, 1350, 1494, 1615, 1776, 1792
MlyI GAGTC 3 cut(s) 264, 1061, 1559
MmeI TCCRAC 2 cut(s) 1422, 1612
MnlI CCTC 7 cut(s) 131, 142, 331, 558, 1319, 1333, 1756
Mph1103I ATGCAT 1 cut(s) 1476
MroNI GCCGGC 1 cut(s) 443
MroXI GAANNNNTTC 2 cut(s) 848, 1692
MseI TTAA 8 cut(s) 278, 707, 867, 1062, 1218, 1265, 1601, 1799
MslI CAYNNNNRTG 1 cut(s) 1533
MspI CCGG 4 cut(s) 444, 636, 770, 863
MspR9I CCNGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
Mva1269I GAATGC 2 cut(s) 655, 892
MvaI CCWGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 5 cut(s) 115, 206, 440, 896, 1480
NaeI GCCGGC 1 cut(s) 445
NcoI CCATGG 2 cut(s) 82, 798
NdeII GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
NgoMIV GCCGGC 1 cut(s) 443
NlaIV GGNNCC 8 cut(s) 394, 463, 582, 1482, 1516, 1581, 1695, 1723
NmuCI GTSAC 1 cut(s) 598
NsiI ATGCAT 1 cut(s) 1476
NspI RCATGY 6 cut(s) 850, 922, 1014, 1084, 1117, 1474
PceI AGGCCT 1 cut(s) 976
PciI ACATGT 4 cut(s) 846, 918, 1080, 1113
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PctI GAATGC 2 cut(s) 655, 892
PdiI GCCGGC 1 cut(s) 445
PdmI GAANNNNTTC 2 cut(s) 848, 1692
PfeI GAWTC 3 cut(s) 329, 833, 1525
PflFI GACNNNGTC 1 cut(s) 374
PfoI TCCNGGA 2 cut(s) 695, 881
PkrI GCNGC 2 cut(s) 101, 529
PleI GAGTC 3 cut(s) 263, 1060, 1558
PpsI GAGTC 3 cut(s) 263, 1060, 1558
PscI ACATGT 4 cut(s) 846, 918, 1080, 1113
PshBI ATTAAT 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 6 cut(s) 471, 695, 839, 881, 1559, 1696
PspFI CCCAGC 2 cut(s) 1433, 1592
PspGI CCWGG 6 cut(s) 471, 695, 839, 881, 1559, 1696
PspN4I GGNNCC 8 cut(s) 394, 463, 582, 1482, 1516, 1581, 1695, 1723
PspPI GGNCC 4 cut(s) 340, 792, 1500, 1722
PstNI CAGNNNCTG 2 cut(s) 754, 1823
PsuI RGATCY 1 cut(s) 1540
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 4 cut(s) 988, 1002, 1015, 1089
RsaNI GTAC 4 cut(s) 987, 1001, 1014, 1088
RseI CAYNNNNRTG 1 cut(s) 1533
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 8 cut(s) 278, 707, 867, 1062, 1218, 1265, 1601, 1799
SatI GCNGC 2 cut(s) 100, 528
Sau3AI GATC 9 cut(s) 4, 262, 925, 979, 993, 1047, 1417, 1540, 1653
Sau96I GGNCC 4 cut(s) 340, 792, 1500, 1722
SchI GAGTC 3 cut(s) 264, 1061, 1559
ScrFI CCNGG 6 cut(s) 473, 697, 841, 883, 1561, 1698
SduI GDGCHC 1 cut(s) 743
SfaNI GCATC 2 cut(s) 849, 1634
SfcI CTRYAG 1 cut(s) 1554
SinI GGWCC 2 cut(s) 792, 1722
SmiMI CAYNNNNRTG 1 cut(s) 1533
Sse9I AATT 8 cut(s) 514, 700, 1182, 1350, 1494, 1615, 1776, 1792
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 8 cut(s) 447, 465, 795, 816, 946, 1269, 1301, 1564
SspMI CTAG 3 cut(s) 1211, 1424, 1607
SstI GAGCTC 1 cut(s) 743
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 6 cut(s) 471, 695, 839, 881, 1559, 1696
StyI CCWWGG 2 cut(s) 82, 798
TaaI ACNGT 3 cut(s) 726, 781, 1638
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 1050
TasI AATT 8 cut(s) 514, 700, 1182, 1350, 1494, 1615, 1776, 1792
TatI WGTACW 2 cut(s) 1000, 1013
TfiI GAWTC 3 cut(s) 329, 833, 1525
Tru1I TTAA 8 cut(s) 278, 707, 867, 1062, 1218, 1265, 1601, 1799
Tru9I TTAA 8 cut(s) 278, 707, 867, 1062, 1218, 1265, 1601, 1799
TscAI CASTG 4 cut(s) 755, 786, 1003, 1643
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 2 cut(s) 99, 527
Tsp45I GTSAC 1 cut(s) 598
TspRI CASTG 4 cut(s) 755, 786, 1003, 1643
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 792, 1722
VspI ATTAAT 1 cut(s) 707
XapI RAATTY 4 cut(s) 514, 700, 1350, 1776
XceI RCATGY 6 cut(s) 850, 922, 1014, 1084, 1117, 1474
XmiI GTMKAC 4 cut(s) 243, 258, 1335, 1507
XmnI GAANNNNTTC 2 cut(s) 848, 1692
XspI CTAG 3 cut(s) 1211, 1424, 1607
Zsp2I ATGCAT 1 cut(s) 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.