FvH4_2g18182

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
15566031 .. 15567613
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18182.t1

Sequence Viewer

Length: 996 bp
ATGCGCAAGATGAAGCTTGCTCTCAAAACCCACGGTATCACCAAAGTCAAAGTCGGCACTCCCTCCGCCACCGACGTTCTCGACTCCATCGCTTTCCCACCCTCCAACGGTACGTTCCGGTCGGATATATCCTCCTCGGTCATCAGACCCATGTTGAAATTTCTGTCCAAAACCAAGTCCTTCTTTGTCGACGTCTATACCTTTTTCCCTTGGGCCTCCGACCCGACCCGCATCGATCTGGACTACGCGCTGTTTGCATCCACCAAAGTGCGTCACACCGATCCGGTCACGGGTCTGACGTATCACAACTTGTTCGATCAAATGGTGGACACTTTGATCTTCGCGATGAAACGTCTCGGGTACCCGGATATCCCTATCTGGATTGCCGAAACGGGTTGGCCCAGCGCCGGAGACTACGACCAGATTGGCGCCAACCTCCACAACGCCGCTACTTACAACCGCAATGTGATCAAAAAGTTCACGGCTAAACCGCCGATCGGAACACCGGCCCGACCGGGAGTTGTGCTGCCGAGCTTCATTTTTGCTCTGTACAACGAGAACACGAAACGGGGTCAGACTACGGAGCGGAACTTCGGGTTGCTGTGGCCGAACGGGACGCATGTGTACGAGATTGACCTGACCGGGAAGACGCCGGAGTCGGAGTTCAAGGCGTTGCCGCCGGCGAAGAATAATAAGGCGTATCCGGGGCCGATATGGTGCGTGGTGAAGGAGGGAGCTAATAAGACCGCGGTTGCAGAGGCTTTGTCAGACGTTTGCTCGCAGGGGAATAAAACTTGTGACCCAATTCGACCCGGAGGGAAGTGCTTTAAGCCCAATAAGTTGGCCCAACATGCGAGCTATGCGTTTAGTGCGTATTGGGCTCAGTTTAGAAAGGCCGAGAAGGCCTGCTACTTTGGTGGAGTAGCTGCTCAAACCATCAAGGATCCAAGAAAGTCTAAACCCGTGTTGACTAGGAAATGTTTTCCTGACTCATGA

Protein Analysis

332

Amino Acids

36.69

Weight (kDa)

9.56

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 1 - 212 7.3e-56 Glycosyl hydrolases family 17
X8 PF07983 239 - 309 7.3e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 655
AatII GACGTC 1 cut(s) 195
Acc16I TGCGCA 1 cut(s) 5
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 2 cut(s) 360, 428
AccBSI CCGCTC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 248, 344, 749
AciI CCGC 9 cut(s) 66, 229, 447, 460, 491, 586, 677, 747, 749
AclWI GGATC 3 cut(s) 275, 938, 951
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 3 cut(s) 192, 429, 650
AfaI GTAC 4 cut(s) 112, 362, 551, 626
AfiI CCNNNNNNNGG 4 cut(s) 107, 290, 407, 497
AgsI TTSAA 2 cut(s) 157, 667
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AleI CACNNNNGTG 1 cut(s) 266
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 5 cut(s) 16, 534, 737, 858, 926
AluI AGCT 5 cut(s) 16, 534, 737, 858, 926
Alw26I GTCTC 2 cut(s) 359, 405
AlwI GGATC 3 cut(s) 275, 938, 951
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 8 cut(s) 213, 398, 507, 605, 707, 843, 894, 903
ApeKI GCWGC 2 cut(s) 526, 926
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
Asp718I GGTACC 1 cut(s) 360
AspLEI GCGC 4 cut(s) 6, 250, 407, 431
AspS9I GGNCC 5 cut(s) 213, 399, 508, 707, 844
AsuC2I CCSGG 5 cut(s) 365, 516, 643, 705, 813
AsuHPI GGTGA 2 cut(s) 31, 736
AvaI CYCGRG 1 cut(s) 356
BamHI GGATCC 1 cut(s) 943
BanI GGYRCC 2 cut(s) 360, 428
BanII GRGCYC 1 cut(s) 883
BarI GAAGNNNNNNTAC 2 cut(s) 893, 925
BbsI GAAGAC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 513, 913
BccI CCATC 2 cut(s) 95, 944
BceAI ACGGC 1 cut(s) 498
BciVI GTATCC 1 cut(s) 711
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 5 cut(s) 365, 516, 643, 705, 813
BcoDI GTCTC 2 cut(s) 359, 405
BfaI CTAG 1 cut(s) 972
BfoI RGCGCY 2 cut(s) 408, 432
BfuI GTATCC 1 cut(s) 711
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 4 cut(s) 447, 527, 677, 927
BlsI GCNGC 4 cut(s) 448, 528, 678, 928
Bme1390I CCNGG 5 cut(s) 365, 516, 643, 705, 813
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 5 cut(s) 213, 399, 508, 707, 844
BmiI GGNNCC 4 cut(s) 362, 430, 708, 945
BmrFI CCNGG 5 cut(s) 365, 516, 643, 705, 813
BmsI GCATC 2 cut(s) 240, 266
BpiI GAAGAC 1 cut(s) 653
BpuMI CCSGG 5 cut(s) 365, 516, 643, 705, 813
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 3 cut(s) 192, 429, 650
BsaJI CCNNGG 5 cut(s) 31, 135, 209, 704, 747
BsaWI WCCGGW 2 cut(s) 117, 283
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 290, 407, 497
Bse118I RCCGGY 2 cut(s) 505, 679
Bse3DI GCAATG 1 cut(s) 469
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 31, 135, 209, 704, 747
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 4 cut(s) 107, 290, 407, 497
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 896
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 513, 913
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 3 cut(s) 248, 344, 749
Bsh1285I CGRYCG 3 cut(s) 122, 498, 515
BshFI GGCC 8 cut(s) 215, 400, 509, 607, 709, 845, 896, 905
BshNI GGYRCC 2 cut(s) 360, 428
BshVI ATCGAT 1 cut(s) 234
BsiEI CGRYCG 3 cut(s) 122, 498, 515
BsiHKCI CYCGRG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 4 cut(s) 107, 290, 407, 497
BsmAI GTCTC 2 cut(s) 359, 405
BsmBI CGTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 8 cut(s) 215, 400, 509, 607, 709, 845, 896, 905
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 883
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
Bsp68I TCGCGA 1 cut(s) 344
BspACI CCGC 9 cut(s) 66, 229, 447, 460, 491, 586, 677, 747, 749
BspANI GGCC 8 cut(s) 215, 400, 509, 607, 709, 845, 896, 905
BspCNI CTCAG 1 cut(s) 895
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 3 cut(s) 248, 344, 749
BspHI TCATGA 1 cut(s) 992
BspLI GGNNCC 4 cut(s) 362, 430, 708, 945
BspPI GGATC 3 cut(s) 275, 938, 951
BspT107I GGYRCC 2 cut(s) 360, 428
BsrBI CCGCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 2 cut(s) 505, 679
BsrGI TGTACA 1 cut(s) 549
BssAI RCCGGY 2 cut(s) 505, 679
BssECI CCNNGG 5 cut(s) 31, 135, 209, 704, 747
BssMI GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
BssNI GRCGYC 3 cut(s) 192, 429, 650
BssT1I CCWWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 35, 110
BstACI GRCGYC 3 cut(s) 192, 429, 650
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 5 cut(s) 18, 681, 779, 856, 907
BstDEI CTNAG 1 cut(s) 882
BstDSI CCRYGG 2 cut(s) 31, 747
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 3 cut(s) 248, 344, 749
BstH2I RGCGCY 2 cut(s) 408, 432
BstHHI GCGC 4 cut(s) 6, 250, 407, 431
BstKTI GATC 7 cut(s) 238, 283, 319, 339, 471, 498, 946
BstMAI GTCTC 2 cut(s) 359, 405
BstMBI GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
BstMCI CGRYCG 3 cut(s) 122, 498, 515
BstMWI GCNNNNNNNGC 6 cut(s) 254, 851, 860, 869, 878, 902
BstNSI RCATGY 2 cut(s) 623, 854
BstSCI CCNGG 5 cut(s) 363, 514, 641, 703, 811
BstUI CGCG 3 cut(s) 248, 344, 749
BstV1I GCAGC 2 cut(s) 513, 913
BstV2I GAAGAC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 943
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 1 cut(s) 943
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 1 cut(s) 711
BsuRI GGCC 8 cut(s) 215, 400, 509, 607, 709, 845, 896, 905
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 2 cut(s) 31, 747
BtgZI GCGATG 2 cut(s) 73, 359
BtsCI GGATG 1 cut(s) 257
BtuMI TCGCGA 1 cut(s) 344
Cac8I GCNNGC 5 cut(s) 18, 681, 779, 856, 907
CciI TCATGA 1 cut(s) 992
CfoI GCGC 4 cut(s) 6, 250, 407, 431
Cfr10I RCCGGY 2 cut(s) 505, 679
Cfr13I GGNCC 5 cut(s) 213, 399, 508, 707, 844
Cfr42I CCGCGG 1 cut(s) 750
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 3 cut(s) 260, 625, 658
Csp6I GTAC 4 cut(s) 111, 361, 550, 625
CviAII CATG 4 cut(s) 151, 620, 851, 993
CviQI GTAC 4 cut(s) 111, 361, 550, 625
DdeI CTNAG 1 cut(s) 882
DinI GGCGCC 1 cut(s) 430
DpnI GATC 7 cut(s) 237, 282, 318, 338, 470, 497, 945
DpnII GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
DrdI GACNNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 605
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 209
Eco147I AGGCCT 1 cut(s) 905
Eco24I GRGCYC 1 cut(s) 883
Eco32I GATATC 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 883
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 4 cut(s) 154, 623, 854, 996
FaiI YATR 8 cut(s) 128, 152, 198, 621, 715, 852, 861, 994
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 1 cut(s) 628
FatI CATG 4 cut(s) 150, 619, 850, 992
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 447, 527, 677, 927
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 447, 527, 677, 927
FspBI CTAG 1 cut(s) 972
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 4 cut(s) 5, 249, 406, 430
GluI GCNGC 4 cut(s) 447, 527, 677, 927
GsaI CCCAGC 1 cut(s) 405
HaeII RGCGCY 2 cut(s) 408, 432
HaeIII GGCC 8 cut(s) 215, 400, 509, 607, 709, 845, 896, 905
HgaI GACGC 3 cut(s) 260, 625, 658
HhaI GCGC 4 cut(s) 6, 250, 407, 431
Hin1I GRCGYC 3 cut(s) 192, 429, 650
Hin1II CATG 4 cut(s) 154, 623, 854, 996
Hin6I GCGC 4 cut(s) 4, 248, 405, 429
HinP1I GCGC 4 cut(s) 4, 248, 405, 429
HincII GTYRAC 2 cut(s) 190, 969
HindII GTYRAC 2 cut(s) 190, 969
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 83, 656, 989
HphI GGTGA 2 cut(s) 31, 736
Hpy166II GTNNAC 5 cut(s) 190, 328, 480, 625, 969
Hpy188I TCNGA 8 cut(s) 124, 146, 220, 297, 500, 576, 661, 769
Hpy188III TCNNGA 6 cut(s) 80, 239, 343, 379, 986, 993
Hpy8I GTNNAC 5 cut(s) 190, 328, 480, 625, 969
Hpy99I CGWCG 2 cut(s) 77, 194
HpyAV CCTTC 3 cut(s) 190, 721, 895
HpyCH4III ACNGT 2 cut(s) 35, 110
HpyCH4IV ACGT 6 cut(s) 75, 113, 192, 299, 352, 771
HpyCH4V TGCA 2 cut(s) 257, 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 851, 860, 869, 878, 902
HpyF3I CTNAG 1 cut(s) 882
HpySE526I ACGT 6 cut(s) 75, 113, 192, 299, 352, 771
Hsp92I GRCGYC 3 cut(s) 192, 429, 650
Hsp92II CATG 4 cut(s) 154, 623, 854, 996
HspAI GCGC 4 cut(s) 4, 248, 405, 429
KasI GGCGCC 1 cut(s) 428
KpnI GGTACC 1 cut(s) 364
KroI GCCGGC 1 cut(s) 679
KroNI GCCGGC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 468
KspI CCGCGG 1 cut(s) 750
Kzo9I GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
LmnI GCTCC 2 cut(s) 583, 734
Lsp1109I GCAGC 2 cut(s) 513, 913
LweI GCATC 2 cut(s) 240, 266
MaeI CTAG 1 cut(s) 972
MaeII ACGT 6 cut(s) 75, 113, 192, 299, 352, 771
MaeIII GTNAC 3 cut(s) 272, 286, 797
MalI GATC 7 cut(s) 237, 282, 318, 338, 470, 497, 945
MbiI CCGCTC 1 cut(s) 586
MboI GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
MboII GAAGA 3 cut(s) 331, 658, 697
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 1 cut(s) 883
MluCI AATT 2 cut(s) 158, 804
Mly113I GGCGCC 1 cut(s) 429
MlyI GAGTC 3 cut(s) 77, 665, 983
MmeI TCCRAC 4 cut(s) 102, 129, 243, 639
MnlI CCTC 9 cut(s) 73, 112, 142, 145, 226, 446, 724, 751, 809
MreI CGCCGGCG 1 cut(s) 679
MroNI GCCGGC 1 cut(s) 679
MseI TTAA 1 cut(s) 828
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 749
MspR9I CCNGG 5 cut(s) 365, 516, 643, 705, 813
MvnI CGCG 3 cut(s) 248, 344, 749
MwoI GCNNNNNNNGC 6 cut(s) 254, 851, 860, 869, 878, 902
NaeI GCCGGC 1 cut(s) 681
NarI GGCGCC 1 cut(s) 429
NciI CCSGG 5 cut(s) 365, 516, 643, 705, 813
NdeII GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
NgoMIV GCCGGC 1 cut(s) 679
NlaIII CATG 4 cut(s) 154, 623, 854, 996
NlaIV GGNNCC 4 cut(s) 362, 430, 708, 945
NmeAIII GCCGAG 2 cut(s) 555, 922
NmuCI GTSAC 3 cut(s) 272, 286, 797
NruI TCGCGA 1 cut(s) 344
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 2 cut(s) 623, 854
OliI CACNNNNGTG 1 cut(s) 266
PagI TCATGA 1 cut(s) 992
PceI AGGCCT 1 cut(s) 905
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PdiI GCCGGC 1 cut(s) 681
PkrI GCNGC 4 cut(s) 448, 528, 678, 928
Ple19I CGATCG 1 cut(s) 498
PleI GAGTC 3 cut(s) 77, 664, 983
PluTI GGCGCC 1 cut(s) 432
PpsI GAGTC 3 cut(s) 77, 664, 983
PspFI CCCAGC 1 cut(s) 401
PspN4I GGNNCC 4 cut(s) 362, 430, 708, 945
PspPI GGNCC 5 cut(s) 213, 399, 508, 707, 844
PsuI RGATCY 1 cut(s) 943
PvuI CGATCG 1 cut(s) 498
RruI TCGCGA 1 cut(s) 344
RsaI GTAC 4 cut(s) 112, 362, 551, 626
RsaNI GTAC 4 cut(s) 111, 361, 550, 625
RseI CAYNNNNRTG 1 cut(s) 266
SacII CCGCGG 1 cut(s) 750
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 4 cut(s) 447, 527, 677, 927
Sau3AI GATC 7 cut(s) 235, 280, 316, 336, 468, 495, 943
Sau96I GGNCC 5 cut(s) 213, 399, 508, 707, 844
SchI GAGTC 3 cut(s) 77, 665, 983
ScrFI CCNGG 5 cut(s) 365, 516, 643, 705, 813
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 2 cut(s) 240, 266
SfiI GGCCNNNNNGGCC 1 cut(s) 902
SfoI GGCGCC 1 cut(s) 430
Sfr303I CCGCGG 1 cut(s) 750
SgrAI CRCCGGYG 1 cut(s) 679
SgrBI CCGCGG 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 2 cut(s) 158, 804
SseBI AGGCCT 1 cut(s) 905
SsiI CCGC 9 cut(s) 66, 229, 447, 460, 491, 586, 677, 747, 749
SspDI GGCGCC 1 cut(s) 428
SspMI CTAG 1 cut(s) 972
StuI AGGCCT 1 cut(s) 905
StyD4I CCNGG 5 cut(s) 363, 514, 641, 703, 811
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 35, 110
TaiI ACGT 6 cut(s) 78, 116, 195, 302, 355, 774
TaqI TCGA 5 cut(s) 81, 189, 234, 315, 808
TaqII GACCGA 1 cut(s) 127
TasI AATT 2 cut(s) 158, 804
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 449, 679
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TseFI GTSAC 3 cut(s) 272, 286, 797
TseI GCWGC 2 cut(s) 526, 926
Tsp45I GTSAC 3 cut(s) 272, 286, 797
TspDTI ATGAA 3 cut(s) 26, 362, 526
TspGWI ACGGA 1 cut(s) 596
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 623, 854
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 972
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.