Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007194.1

Orthogroup ID

OG0009912

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1402

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007194.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

aagtccttcttcttcgtcgatgtctatacttacttcccctggtcttccgatccgaccaacatcgatttgggctacgctctactcgaacccaccaacgtgacgaacaccgacccggtttcgggtctgacgtaccacaacctcttcgatcagatggtggacgctttaattttcgcgatgaagcgactcgggtacccggatgtccgggtctggatcgccgaaacgggttggcccagcggcggagactacgaccagattggcgccaacatccacaacgccgctatttacaaccgcaatgtgatcaaaaagttcacggctaaaccgccggtcggaacgccggctcgaccgggcgtggtgctcccgagcttcatcttcgctctttataacgagaacacgaaaccgggtccgagtacggagcggaatttcgggttgctgtacccgaacgggtcgaatgtgtatcagattgacttgaccgggaggacgccggagtccgagttcaaggcgttgccgccggcgacgaataataagccgtatccggggccgatatggtgcttggctaagaagggagccaataagactgcggttgcagaggctttgtcgtacgcttgctcgcaggggaataaaacttgtgacccgattcaacccggagggaagtgctttaagcccaattcgttggcccaacatgcgagctatgcgttcagtgcgtattgggctcagtttaggaaggccggtggtagctgcaacttcggtggtctagctgttcaaaccatcgacgatccaagttatggatcatgcaagttccctggtgctaagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

271

Amino Acids

29.54

Weight (kDa)

8.62

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07320
fragaria_vesca	FvH4_2g18182 FvH4_2g18200
malus_domestica	MD05G1166600.v1.1 MD10G1156600.v1.1
prunus_persica	Prupe.8G194400_v2.0.a1
pyrus_communis	pycom05g15540 pycom10g13480
rosa_chinensis	RchiOBHm_Chr6g0283561 RchiOBHm_Chr6g0283571
rosa_laevigata	RLG00000012816
rosa_multiflora	Rmu_sc0005719.1_g000009 Rmu_sc0007194.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185370 Rroxscaffold_7G00185400
rosa_rugosa	Rorug06G0155800
rosa_samantha	Rh6AG267700 Rh6BG270200 Rh6CG270000 Rh6DG263600
rosa_wichuraiana	Rw6G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	2 cut(s)	189, 257
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccBSI	CCGCTC	1 cut(s)	415
AccII	CGCG	1 cut(s)	173
AciI	CCGC	8 cut(s)	234, 237, 276, 289, 320, 415, 506, 578
AclWI	GGATC	4 cut(s)	44, 218, 767, 793
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	2 cut(s)	258, 479
AfaI	GTAC	5 cut(s)	131, 191, 409, 434, 599
AfiI	CCNNNNNNNGG	6 cut(s)	118, 119, 236, 326, 533, 782
AgsI	TTSAA	3 cut(s)	496, 638, 761
AjnI	CCWGG	2 cut(s)	38, 799
AleI	CACNNNNGTG	1 cut(s)	95
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
AluBI	AGCT	5 cut(s)	363, 687, 735, 755, 811
AluI	AGCT	5 cut(s)	363, 687, 735, 755, 811
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	44, 218, 767, 793
Ama87I	CYCGRG	2 cut(s)	185, 358
AoxI	GGCC	4 cut(s)	227, 536, 672, 723
ApeKI	GCWGC	1 cut(s)	735
ApoI	RAATTY	1 cut(s)	418
Asp718I	GGTACC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	4 cut(s)	228, 401, 536, 673
AsuC2I	CCSGG	8 cut(s)	113, 194, 203, 345, 399, 472, 534, 642
AvaI	CYCGRG	2 cut(s)	185, 358
AvaII	GGWCC	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	173, 206
BanI	GGYRCC	2 cut(s)	189, 257
BanII	GRGCYC	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	2 cut(s)	145, 773
BceAI	ACGGC	2 cut(s)	327, 511
BciT130I	CCWGG	2 cut(s)	40, 801
BciVI	GTATCC	1 cut(s)	540
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	8 cut(s)	113, 194, 203, 345, 399, 472, 534, 642
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	752
BfoI	RGCGCY	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	4 cut(s)	235, 276, 506, 736
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	4 cut(s)	236, 277, 507, 737
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	185, 358
BmgT120I	GGNCC	4 cut(s)	228, 401, 536, 673
BmiI	GGNNCC	5 cut(s)	191, 259, 402, 537, 565
BpiI	GAAGAC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuMI	CCSGG	8 cut(s)	113, 194, 203, 345, 399, 472, 534, 642
Bsa29I	ATCGAT	1 cut(s)	63
BsaHI	GRCGYC	2 cut(s)	258, 479
BsaJI	CCNNGG	3 cut(s)	38, 533, 799
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	6 cut(s)	118, 119, 236, 326, 533, 782
Bse118I	RCCGGY	4 cut(s)	322, 334, 508, 725
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	40, 801
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	38, 533, 799
BseGI	GGATG	2 cut(s)	202, 264
BseLI	CCNNNNNNNGG	6 cut(s)	118, 119, 236, 326, 533, 782
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	725
BseXI	GCAGC	1 cut(s)	722
BseYI	CCCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	2 cut(s)	327, 344
BshFI	GGCC	4 cut(s)	229, 538, 674, 725
BshNI	GGYRCC	2 cut(s)	189, 257
BshVI	ATCGAT	1 cut(s)	63
BsiEI	CGRYCG	2 cut(s)	327, 344
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	185, 358
BsiWI	CGTACG	1 cut(s)	597
BslI	CCNNNNNNNGG	6 cut(s)	118, 119, 236, 326, 533, 782
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	4 cut(s)	229, 538, 674, 725
BsoBI	CYCGRG	2 cut(s)	185, 358
Bsp1286I	GDGCHC	2 cut(s)	357, 712
Bsp143I	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp68I	TCGCGA	1 cut(s)	173
BspACI	CCGC	8 cut(s)	234, 237, 276, 289, 320, 415, 506, 578
BspANI	GGCC	4 cut(s)	229, 538, 674, 725
BspCNI	CTCAG	1 cut(s)	724
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	5 cut(s)	191, 259, 402, 537, 565
BspPI	GGATC	4 cut(s)	44, 218, 767, 793
BspT107I	GGYRCC	2 cut(s)	189, 257
BsrBI	CCGCTC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	298
BsrFI	RCCGGY	4 cut(s)	322, 334, 508, 725
BssAI	RCCGGY	4 cut(s)	322, 334, 508, 725
BssECI	CCNNGG	3 cut(s)	38, 533, 799
BssMI	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
BssNI	GRCGYC	2 cut(s)	258, 479
Bst2UI	CCWGG	2 cut(s)	40, 801
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	2 cut(s)	258, 479
BstC8I	GCNNGC	5 cut(s)	336, 510, 604, 608, 685
BstDEI	CTNAG	3 cut(s)	555, 711, 807
BstF5I	GGATG	2 cut(s)	202, 264
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	6 cut(s)	52, 148, 213, 300, 775, 788
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
BstMCI	CGRYCG	2 cut(s)	327, 344
BstMWI	GCNNNNNNNGC	4 cut(s)	680, 689, 698, 707
BstNI	CCWGG	2 cut(s)	40, 801
BstNSI	RCATGY	1 cut(s)	683
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	722
BstV2I	GAAGAC	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	670
Bsu15I	ATCGAT	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	4 cut(s)	229, 538, 674, 725
BsuTUI	ATCGAT	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	202, 264
BtsIMutI	CAGTG	1 cut(s)	703
BtuMI	TCGCGA	1 cut(s)	173
Cac8I	GCNNGC	5 cut(s)	336, 510, 604, 608, 685
CfoI	GCGC	1 cut(s)	260
Cfr10I	RCCGGY	4 cut(s)	322, 334, 508, 725
Cfr13I	GGNCC	4 cut(s)	228, 401, 536, 673
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	2 cut(s)	167, 487
Csp6I	GTAC	5 cut(s)	130, 190, 408, 433, 598
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	2 cut(s)	680, 789
CviQI	GTAC	5 cut(s)	130, 190, 408, 433, 598
DdeI	CTNAG	3 cut(s)	555, 711, 807
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	6 cut(s)	51, 147, 212, 299, 774, 787
DpnII	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	401
Eco88I	CYCGRG	2 cut(s)	185, 358
EcoRII	CCWGG	2 cut(s)	38, 799
EcoT38I	GRGCYC	1 cut(s)	712
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	2 cut(s)	683, 792
FaiI	YATR	8 cut(s)	27, 381, 544, 681, 690, 783, 790, 814
FalI	AAGNNNNNCTT	1 cut(s)	25
FatI	CATG	2 cut(s)	679, 788
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	235, 276, 506, 736
FokI	GGATG	2 cut(s)	209, 251
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	4 cut(s)	235, 276, 506, 736
FspBI	CTAG	1 cut(s)	752
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	4 cut(s)	235, 276, 506, 736
GsaI	CCCAGC	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	229, 538, 674, 725
HgaI	GACGC	2 cut(s)	167, 487
HhaI	GCGC	1 cut(s)	260
Hin1I	GRCGYC	2 cut(s)	258, 479
Hin1II	CATG	2 cut(s)	683, 792
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	183, 485, 634
Hpy166II	GTNNAC	2 cut(s)	157, 309
Hpy188I	TCNGA	8 cut(s)	49, 54, 126, 150, 329, 405, 459, 490
Hpy188III	TCNNGA	3 cut(s)	172, 208, 358
Hpy8I	GTNNAC	2 cut(s)	157, 309
Hpy99I	CGWCG	3 cut(s)	20, 517, 773
HpyAV	CCTTC	3 cut(s)	16, 553, 715
HpyCH4IV	ACGT	2 cut(s)	96, 128
HpyCH4V	TGCA	3 cut(s)	584, 738, 792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	680, 689, 698, 707
HpyF3I	CTNAG	3 cut(s)	555, 711, 807
HpySE526I	ACGT	2 cut(s)	96, 128
Hsp92I	GRCGYC	2 cut(s)	258, 479
Hsp92II	CATG	2 cut(s)	683, 792
HspAI	GCGC	1 cut(s)	258
KasI	GGCGCC	1 cut(s)	257
KpnI	GGTACC	1 cut(s)	193
KroI	GCCGGC	2 cut(s)	334, 508
KroNI	GCCGGC	2 cut(s)	336, 510
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
LmnI	GCTCC	3 cut(s)	360, 412, 563
Lsp1109I	GCAGC	1 cut(s)	722
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	2 cut(s)	96, 128
MaeIII	GTNAC	2 cut(s)	97, 626
MalI	GATC	6 cut(s)	51, 147, 212, 299, 774, 787
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
MboII	GAAGA	4 cut(s)	4, 36, 133, 361
MhlI	GDGCHC	2 cut(s)	357, 712
MluCI	AATT	3 cut(s)	165, 418, 664
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	177, 494
MmeI	TCCRAC	2 cut(s)	77, 307
MnlI	CCTC	4 cut(s)	149, 468, 580, 638
MreI	CGCCGGCG	1 cut(s)	508
MroNI	GCCGGC	2 cut(s)	334, 508
MseI	TTAA	2 cut(s)	164, 657
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	40, 801
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	680, 689, 698, 707
NaeI	GCCGGC	2 cut(s)	336, 510
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	8 cut(s)	113, 194, 203, 345, 399, 472, 534, 642
NdeII	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
NgoMIV	GCCGGC	2 cut(s)	334, 508
NlaIII	CATG	2 cut(s)	683, 792
NlaIV	GGNNCC	5 cut(s)	191, 259, 402, 537, 565
NmuCI	GTSAC	2 cut(s)	97, 626
NruI	TCGCGA	1 cut(s)	173
NspI	RCATGY	1 cut(s)	683
OliI	CACNNNNGTG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 125
PdiI	GCCGGC	2 cut(s)	336, 510
PfeI	GAWTC	1 cut(s)	634
Pfl23II	CGTACG	1 cut(s)	597
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	4 cut(s)	236, 277, 507, 737
PleI	GAGTC	2 cut(s)	177, 493
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	2 cut(s)	177, 493
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	38, 799
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	38, 799
PspLI	CGTACG	1 cut(s)	597
PspN4I	GGNNCC	5 cut(s)	191, 259, 402, 537, 565
PspPI	GGNCC	4 cut(s)	228, 401, 536, 673
RruI	TCGCGA	1 cut(s)	173
RsaI	GTAC	5 cut(s)	131, 191, 409, 434, 599
RsaNI	GTAC	5 cut(s)	130, 190, 408, 433, 598
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	164, 657
SatI	GCNGC	4 cut(s)	235, 276, 506, 736
Sau3AI	GATC	6 cut(s)	49, 145, 210, 297, 772, 785
Sau96I	GGNCC	4 cut(s)	228, 401, 536, 673
SchI	GAGTC	2 cut(s)	177, 494
SduI	GDGCHC	2 cut(s)	357, 712
SetI	ASST	8 cut(s)	99, 131, 141, 365, 689, 737, 757, 813
SfoI	GGCGCC	1 cut(s)	259
SgrAI	CRCCGGYG	1 cut(s)	508
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	165, 418, 664
SsiI	CCGC	8 cut(s)	234, 237, 276, 289, 320, 415, 506, 578
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	752
TaiI	ACGT	2 cut(s)	99, 131
TaqI	TCGA	7 cut(s)	18, 63, 84, 144, 340, 446, 768
TasI	AATT	3 cut(s)	165, 418, 664
TauI	GCSGC	3 cut(s)	237, 278, 508
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	2 cut(s)	164, 657
Tru9I	TTAA	2 cut(s)	164, 657
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	2 cut(s)	97, 626
TseI	GCWGC	1 cut(s)	735
Tsp45I	GTSAC	2 cut(s)	97, 626
TspDTI	ATGAA	2 cut(s)	191, 355
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	703
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.