FvH4_2g20841

Peptide transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
17397282 .. 17400415
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20841.t1

Sequence Viewer

Length: 1596 bp
ATGGAAAAGGTCGAGGAGAAAGGAGCTGCATATGGAGCAGAGGACTACACACGAGATGGGACTGTCGACCTCCAAGGGAGACCTGTTTTCAGATCAAACACTGGCAGATGGAGAGCTTGTTCCTTCATTGTAGGGTATGAAGTGTTTGAGAGGATGGCATATTACGGAATTGCGTCAAATCTGGTGGTGTATCTGACGACGAAGCTGCATGAAGGCACAGTGACATCTTCAAACAATGTCACAAACTGGGTTGGGACGGTGTGGATGACACCCCTTTTGGGAGCATATATTGCAGATGCTCATCTCGGCCGATACTGGACTTTCGTCATTGCCTCCGCCATATATCTTGTGGGAATGTCCCTACTGACGCTAGCAGTTTCCCTCCCTGCCCTAAGACCACCATCATGCGACCACGGAATTAAACTTGAAGATTGTGAGAGAAGAGCCACCCCATTCCAAGTGGCAATATTCTACTGTGGACTGTACATCATTGCACTCGGAACTGGTGGCACCAAGCCAAACATCTCGACCATGGGTGCCGACCAGTTTGATGAGTTTGAGCCTAAAGAAAAGACCCAAAAACTCTCCTTCTTCAACTGGTGGATGTTCAGCATCTTCTTTGGCACACTCTTCTCAAACACCATCTTGATTTACATTCAAGACAATGTGGGGTGGGCACTTGGCTATGGTCTTCCAACAATTGGCCTTGCGTTTTCCATTTTGGTGTTTTTGACGGGTACCAAGTTTTATAGGCACAAATTGCCTTCAGGAAGTCCCTTCAGTAGGATAGCTCATGTTCTTGTGGCATATATAAGAAAATGGAGGGTTCCTATCCCAGATGACCCAAAGGAGCTTCATGAGCTGAGCTTGGAGGAGTATACAAACTCAGAGAAAGTCAGAATTGATCACTCCACTTCATTAGGGTTTCTTGACAAAGCAGCTGTAAAGAGTGGACCGACCACACCATGGATGCTATGTCCAGTGACCCAAGTCGAAGAAACCAAGCAAATGATCAAAATGGTTCCAATTTTGATTGCAACATTTTTACCAAGCATGATGTTAGCTCAAGGAGGAACACTCTTTGTCAAACAAGGAACTACACTAGATAGAAGCATCGGACCACATTTTGATATCCCTCCAGCATGTCTCTCAGCATTTGTAACAATATTCATGCTGATAAGCCTTGTGCTCTACGATCGCTACTTTGTTCCTGTTATGCGCAAATATACGAAAAACCCTAGAGGGATCACACTGCTGCAGAGACTAGGCATTGGCCTAGTGTTGCACATCATTATCTTGATGACTGCCTTCTTCGCCGAAAGACGAAGGCTGAGTGTTATACAAGAACATAAACTGTTTGGGAAAAGGGACACAGTTCCTCTCACAATTTTCATTCTCTTGCCTCAATTTGCTTTGGCAGGGATTGCTGACACCTTTGTGGAAGTCGCAAAGATAGAGTTTTTCTATGACCAAGCACCACAAGGTATGAAGAGCTTGGGGACCTCGTACTTCACTACTAGCTTGGGAATTGGGAGTTTCCTCAGTAGTTTTCTTCTCAAAACAGTTGCAGAGTTCACAAAGAAACTAAAAGAATAG

Protein Analysis

532

Amino Acids

59.58

Weight (kDa)

8.96

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 105 - 529 6e-103 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1220
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 3 cut(s) 509, 536, 737
AccB7I CCANNNNNTGG 2 cut(s) 701, 966
AccI GTMKAC 2 cut(s) 66, 878
AciI CCGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 1253
AcoI YGGCCR 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 750, 763
AfaI GTAC 3 cut(s) 485, 739, 1508
AfiI CCNNNNNNNGG 4 cut(s) 278, 701, 783, 966
AgsI TTSAA 4 cut(s) 231, 428, 595, 659
AleI CACNNNNGTG 1 cut(s) 1436
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
Alw21I GWGCWC 1 cut(s) 1191
Alw26I GTCTC 3 cut(s) 73, 1151, 1255
AlwI GGATC 1 cut(s) 1253
AoxI GGCC 3 cut(s) 307, 703, 1273
ApeKI GCWGC 4 cut(s) 26, 205, 938, 1255
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
Asp718I GGTACC 1 cut(s) 737
AspLEI GCGC 1 cut(s) 1221
AspS9I GGNCC 3 cut(s) 953, 1118, 1500
AsuNHI GCTAGC 1 cut(s) 370
AvaII GGWCC 3 cut(s) 953, 1118, 1500
BaeGI GKGCMC 1 cut(s) 679
BanI GGYRCC 3 cut(s) 509, 536, 737
BauI CACGAG 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 1191
BbvI GCAGC 4 cut(s) 13, 192, 950, 1242
BccI CCATC 5 cut(s) 50, 102, 148, 409, 650
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BclI TGATCA 2 cut(s) 904, 1011
BcoDI GTCTC 3 cut(s) 73, 1151, 1255
BfaI CTAG 6 cut(s) 371, 1103, 1239, 1265, 1277, 1518
BfmI CTRYAG 1 cut(s) 1256
BisI GCNGC 4 cut(s) 27, 206, 939, 1256
BlpI GCTNAGC 1 cut(s) 863
BlsI GCNGC 4 cut(s) 28, 207, 940, 1257
Bme18I GGWCC 3 cut(s) 953, 1118, 1500
BmgT120I GGNCC 3 cut(s) 953, 1118, 1500
BmiI GGNNCC 6 cut(s) 511, 538, 739, 828, 1023, 1501
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 4 cut(s) 286, 621, 960, 1122
BmtI GCTAGC 1 cut(s) 374
BmuI ACTGGG 1 cut(s) 256
BoxI GACNNNNGTC 2 cut(s) 323, 989
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 1062, 1094
BpmI CTGGAG 1 cut(s) 1122
Bpu1102I GCTNAGC 1 cut(s) 863
BpuEI CTTGAG 1 cut(s) 1050
BsaBI GATNNNNATC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 4 cut(s) 73, 412, 531, 965
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 701, 783, 966
Bse1I ACTGG 7 cut(s) 106, 251, 320, 508, 544, 602, 980
Bse3DI GCAATG 2 cut(s) 327, 489
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 4 cut(s) 73, 412, 531, 965
BseGI GGATG 4 cut(s) 159, 270, 609, 975
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 4 cut(s) 278, 701, 783, 966
BseMI GCAATG 2 cut(s) 327, 489
BseMII CTCAG 5 cut(s) 854, 900, 1164, 1322, 1555
BseNI ACTGG 7 cut(s) 106, 251, 320, 508, 544, 602, 980
BseRI GAGGAG 2 cut(s) 29, 887
BseSI GKGCMC 1 cut(s) 679
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 13, 192, 950, 1242
Bsh1285I CGRYCG 2 cut(s) 310, 1198
BshFI GGCC 3 cut(s) 309, 705, 1275
BshNI GGYRCC 3 cut(s) 509, 536, 737
BsiEI CGRYCG 2 cut(s) 310, 1198
BsiHKAI GWGCWC 1 cut(s) 1191
BslFI GGGAC 6 cut(s) 73, 268, 343, 759, 1382, 1513
BslI CCNNNNNNNGG 4 cut(s) 278, 701, 783, 966
BsmAI GTCTC 3 cut(s) 73, 1151, 1255
BsmFI GGGAC 6 cut(s) 73, 268, 343, 759, 1382, 1513
BsnI GGCC 3 cut(s) 309, 705, 1275
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 2 cut(s) 679, 1191
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 5 cut(s) 92, 904, 1011, 1195, 1245
Bsp1720I GCTNAGC 1 cut(s) 863
Bsp19I CCATGG 2 cut(s) 531, 965
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 309, 705, 1275
BspCNI CTCAG 5 cut(s) 855, 899, 1163, 1323, 1554
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 6 cut(s) 511, 538, 739, 828, 1023, 1501
BspMAI CTGCAG 1 cut(s) 1260
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 1253
BspQI GCTCTTC 2 cut(s) 436, 1484
BspT107I GGYRCC 3 cut(s) 509, 536, 737
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 2 cut(s) 327, 489
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 7 cut(s) 106, 251, 320, 508, 544, 602, 980
BssECI CCNNGG 4 cut(s) 73, 412, 531, 965
BssMI GATC 5 cut(s) 92, 904, 1011, 1195, 1245
BssNAI GTATAC 1 cut(s) 879
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 3 cut(s) 73, 531, 965
Bst1107I GTATAC 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 51
Bst4CI ACNGT 8 cut(s) 64, 220, 259, 476, 483, 1356, 1375, 1564
Bst6I CTCTTC 3 cut(s) 436, 635, 1484
BstAPI GCANNNNNTGC 3 cut(s) 290, 760, 1424
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 6 cut(s) 392, 863, 886, 1150, 1331, 1541
BstDSI CCRYGG 3 cut(s) 412, 531, 965
BstENI CCTNNNNNAGG 1 cut(s) 781
BstF5I GGATG 4 cut(s) 159, 270, 609, 975
BstHHI GCGC 1 cut(s) 1221
BstKTI GATC 5 cut(s) 95, 907, 1014, 1198, 1248
BstMAI GTCTC 3 cut(s) 73, 1151, 1255
BstMBI GATC 5 cut(s) 92, 904, 1011, 1195, 1245
BstMCI CGRYCG 2 cut(s) 310, 1198
BstMWI GCNNNNNNNGC 6 cut(s) 35, 290, 760, 859, 1313, 1424
BstNSI RCATGY 1 cut(s) 1146
BstPAI GACNNNNGTC 2 cut(s) 323, 989
BstSFI CTRYAG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 4 cut(s) 13, 192, 950, 1242
BstV2I GAAGAC 1 cut(s) 683
BstZ17I GTATAC 1 cut(s) 879
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 3 cut(s) 309, 705, 1275
BtgI CCRYGG 3 cut(s) 412, 531, 965
BtsCI GGATG 4 cut(s) 159, 270, 609, 975
BtsI GCAGTG 1 cut(s) 1250
BtsIMutI CAGTG 4 cut(s) 99, 225, 987, 1250
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 856
CfoI GCGC 1 cut(s) 1221
Cfr13I GGNCC 3 cut(s) 953, 1118, 1500
CseI GACGC 2 cut(s) 162, 376
Csp6I GTAC 3 cut(s) 484, 738, 1507
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 9 cut(s) 209, 405, 532, 794, 857, 966, 1054, 1143, 1171
CviQI GTAC 3 cut(s) 484, 738, 1507
DdeI CTNAG 6 cut(s) 392, 863, 886, 1150, 1331, 1541
DpnI GATC 5 cut(s) 94, 906, 1013, 1197, 1247
DpnII GATC 5 cut(s) 92, 904, 1011, 1195, 1245
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 3 cut(s) 436, 635, 1484
EarI CTCTTC 3 cut(s) 436, 635, 1484
EciI GGCGGA 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 3 cut(s) 73, 531, 965
Eco31I GGTCTC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 1132
Eco47I GGWCC 3 cut(s) 953, 1118, 1500
Eco52I CGGCCG 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 750, 763
EcoNI CCTNNNNNAGG 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 1500
EcoRV GATATC 1 cut(s) 1132
EcoT14I CCWWGG 3 cut(s) 73, 531, 965
ErhI CCWWGG 3 cut(s) 73, 531, 965
FaeI CATG 9 cut(s) 212, 408, 535, 797, 860, 969, 1057, 1146, 1174
FaqI GGGAC 6 cut(s) 73, 268, 343, 759, 1382, 1513
FatI CATG 9 cut(s) 208, 404, 531, 793, 856, 965, 1053, 1142, 1170
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 2 cut(s) 904, 1011
FblI GTMKAC 2 cut(s) 66, 878
Fnu4HI GCNGC 4 cut(s) 27, 206, 939, 1256
FokI GGATG 4 cut(s) 166, 277, 616, 982
Fsp4HI GCNGC 4 cut(s) 27, 206, 939, 1256
FspBI CTAG 6 cut(s) 371, 1103, 1239, 1265, 1277, 1518
FspI TGCGCA 1 cut(s) 1220
GlaI GCGC 1 cut(s) 1220
GluI GCNGC 4 cut(s) 27, 206, 939, 1256
GsuI CTGGAG 1 cut(s) 1122
HaeIII GGCC 3 cut(s) 309, 705, 1275
HgaI GACGC 2 cut(s) 162, 376
HhaI GCGC 1 cut(s) 1221
Hin1II CATG 9 cut(s) 212, 408, 535, 797, 860, 969, 1057, 1146, 1174
Hin6I GCGC 1 cut(s) 1219
HinP1I GCGC 1 cut(s) 1219
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
Hpy166II GTNNAC 5 cut(s) 67, 479, 879, 953, 1575
Hpy188I TCNGA 6 cut(s) 92, 195, 500, 889, 899, 1118
Hpy188III TCNNGA 7 cut(s) 526, 646, 659, 768, 857, 929, 1297
Hpy8I GTNNAC 5 cut(s) 67, 479, 879, 953, 1575
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 7 cut(s) 133, 206, 598, 774, 787, 1318, 1320
HpyCH4III ACNGT 8 cut(s) 64, 220, 259, 476, 483, 1356, 1375, 1564
HpyCH4V TGCA 8 cut(s) 29, 208, 293, 494, 1037, 1258, 1285, 1568
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 290, 760, 859, 1313, 1424
HpyF3I CTNAG 6 cut(s) 392, 863, 886, 1150, 1331, 1541
Hsp92II CATG 9 cut(s) 212, 408, 535, 797, 860, 969, 1057, 1146, 1174
HspAI GCGC 1 cut(s) 1219
KpnI GGTACC 1 cut(s) 741
Ksp22I TGATCA 2 cut(s) 904, 1011
Kzo9I GATC 5 cut(s) 92, 904, 1011, 1195, 1245
LguI GCTCTTC 2 cut(s) 436, 1484
LmnI GCTCC 4 cut(s) 23, 35, 281, 850
Lsp1109I GCAGC 4 cut(s) 13, 192, 950, 1242
LweI GCATC 4 cut(s) 286, 621, 960, 1122
MaeI CTAG 6 cut(s) 371, 1103, 1239, 1265, 1277, 1518
MaeIII GTNAC 4 cut(s) 220, 238, 982, 1159
MalI GATC 5 cut(s) 94, 906, 1013, 1197, 1247
MboI GATC 5 cut(s) 92, 904, 1011, 1195, 1245
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 2 cut(s) 679, 1191
MluCI AATT 9 cut(s) 168, 417, 699, 758, 900, 1026, 1386, 1406, 1527
MmeI TCCRAC 1 cut(s) 719
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 3 cut(s) 403, 722, 1436
MspA1I CMGCKG 1 cut(s) 941
MunI CAATTG 1 cut(s) 699
MwoI GCNNNNNNNGC 6 cut(s) 35, 290, 760, 859, 1313, 1424
NcoI CCATGG 2 cut(s) 531, 965
NdeI CATATG 1 cut(s) 31
NdeII GATC 5 cut(s) 92, 904, 1011, 1195, 1245
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 9 cut(s) 212, 408, 535, 797, 860, 969, 1057, 1146, 1174
NlaIV GGNNCC 6 cut(s) 511, 538, 739, 828, 1023, 1501
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 3 cut(s) 220, 238, 982
NsbI TGCGCA 1 cut(s) 1220
NspI RCATGY 1 cut(s) 1146
OliI CACNNNNGTG 1 cut(s) 1436
PagI TCATGA 1 cut(s) 856
PciSI GCTCTTC 2 cut(s) 436, 1484
PflMI CCANNNNNTGG 2 cut(s) 701, 966
PkrI GCNGC 4 cut(s) 28, 207, 940, 1257
Ple19I CGATCG 1 cut(s) 1198
PpuMI RGGWCCY 1 cut(s) 1500
PshAI GACNNNNGTC 2 cut(s) 323, 989
Psp5II RGGWCCY 1 cut(s) 1500
PspN4I GGNNCC 6 cut(s) 511, 538, 739, 828, 1023, 1501
PspPI GGNCC 3 cut(s) 953, 1118, 1500
PspPPI RGGWCCY 1 cut(s) 1500
PstI CTGCAG 1 cut(s) 1260
PvuI CGATCG 1 cut(s) 1198
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 3 cut(s) 485, 739, 1508
RsaNI GTAC 3 cut(s) 484, 738, 1507
RseI CAYNNNNRTG 3 cut(s) 403, 722, 1436
SalI GTCGAC 1 cut(s) 65
SapI GCTCTTC 2 cut(s) 436, 1484
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 27, 206, 939, 1256
Sau3AI GATC 5 cut(s) 92, 904, 1011, 1195, 1245
Sau96I GGNCC 3 cut(s) 953, 1118, 1500
SduI GDGCHC 2 cut(s) 679, 1191
SfaNI GCATC 4 cut(s) 286, 621, 960, 1122
SfcI CTRYAG 1 cut(s) 1256
SinI GGWCC 3 cut(s) 953, 1118, 1500
SmiMI CAYNNNNRTG 3 cut(s) 403, 722, 1436
SmlI CTYRAG 1 cut(s) 1065
SmoI CTYRAG 1 cut(s) 1065
Sse9I AATT 9 cut(s) 168, 417, 699, 758, 900, 1026, 1386, 1406, 1527
SsiI CCGC 1 cut(s) 336
SspI AATATT 2 cut(s) 468, 1167
SspMI CTAG 6 cut(s) 371, 1103, 1239, 1265, 1277, 1518
StyI CCWWGG 3 cut(s) 73, 531, 965
TaaI ACNGT 8 cut(s) 64, 220, 259, 476, 483, 1356, 1375, 1564
TaqI TCGA 4 cut(s) 12, 66, 527, 993
TaqII GACCGA 1 cut(s) 970
TasI AATT 9 cut(s) 168, 417, 699, 758, 900, 1026, 1386, 1406, 1527
TatI WGTACW 1 cut(s) 483
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 4 cut(s) 106, 225, 987, 1257
TseFI GTSAC 3 cut(s) 220, 238, 982
TseI GCWGC 4 cut(s) 26, 205, 938, 1255
Tsp45I GTSAC 3 cut(s) 220, 238, 982
TspDTI ATGAA 8 cut(s) 115, 153, 225, 845, 906, 1159, 1381, 1502
TspGWI ACGGA 2 cut(s) 180, 429
TspRI CASTG 4 cut(s) 106, 225, 987, 1257
Van91I CCANNNNNTGG 2 cut(s) 701, 966
VpaK11BI GGWCC 3 cut(s) 953, 1118, 1500
XagI CCTNNNNNAGG 1 cut(s) 781
XceI RCATGY 1 cut(s) 1146
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 2 cut(s) 66, 878
XspI CTAG 6 cut(s) 371, 1103, 1239, 1265, 1277, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.