Rroxscaffold_7G00181620

Peptide transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
20687586 .. 20694007
6422 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00181620.1

Sequence Viewer

Length: 1725 bp
ATGAAGAAAGCCACTGATATCAGGTATGAGGTGTTTGAGAGGATGGCATATTATGGAATTGCATCAAACCTGGTGGTGTATTTGACAACGAAGCTGCACGAAGGCACAGTGACCTCTTCCAATAACGTCACAAACTGGGTTGGGACGGTCTGGATGACACCCCTTTTGGGAGCTTATATTGCAGATGCTCATCTAGGCCGATACTGGACTTTTGTCATTGCCTCCGCCATATATCTTGTGGGAATGTCCTTATTGACGCTAGCAGTGTCACTCCCTGCCCTAAGACCACCATCATGCGACCACGGAATTAAACTTGAAGATTGTGAGAGAAGAGCCTCCCCATTCCAAGTGGGCATATTCTACTGTGGATTGTACATCATTGCACTCGGAACTGGTGGTACCAAGCCAAACATCTCAACCATGGGTGCAGACCAATTTGATGAGTTTGAGCCTAAAGAGAGAATCCAAAAACTCTCCTTCTTCAACTGGTGGATGTTCAGCATTTTCTTTGGCACACTTTTCTCAAACACCATCTTGATTTACATTCAAGACAATGTGGGGTGGGCACTTGGCTATGGACTTCCAACAATTGGCCTTGCACTTTCCATTTTGGTGTTTTTGGTGGGTACTAGGTTTTATAGGCACAAATTGCCTTCAGAGAGTCCCTTCAGTAGGATAGCTCATGTGCTTGTGGCGTTTATAAGGAAGTGGAGGGTTCCTGTCCCAGATGACCCAAAGGAGCTTCATGAGCTGAGCTTGGAAGAGTACACAAACTCCGAGAAATTCAGAATTGATCACTCCCCTTCATTAGGCACTGAATCCCCCGGCAGGTTTCTTGACAAAGCAGCTGTAAAGAGTGGACCAACCTCACCATGGATACTATGTCCAGTGACCCAAGTCGAAGAAACCAAGCAAATGATCAAAATGGTTCCAATTTTGATTGCAACATTTTTACCAAGCATGATGTTAGCTCAAGGAGGAACTCTCTTTGTCAAACAAGGAATTACACTAGATAGAAGCATTGGACCACATTTTGATATTCCTCCAGCATGTCTCTCAGCATTTGTAACAATCTTCATGCTGATAAGCCTTGTGCTCTACGATCGCTACTTTGTTCCGGTGGTGAGGAAATATACGAAGAACCCTAGAGGGATCACACTGCTGCAAAGACTAGGCATTGGCCTTGTGTTGCACATCATCATCTTGATGACAGCTTTCTTCGCCGAAAGACGAAGGCTAAGTGTTATACAAGAAAATAAACTGTTTGGGAAAAGGGACACAGTTCCTCTCACAATTTTCATTCTCTTGCCTCAGTTTGCTTTGGCTGGGATTGCTGACACCTTTGTGGAAGTTGCAAAGATAGAGTTTTTCTATGACCAAGCACCACAGGGCATGAAGAGCTTGGGAACCTCGTACTTCACTACTAGCTTGGGAATTGGGAGTTTCCTTAGTAGTTTTCTTCTATCAACAGTTGCAGACTTCACCAAGAAACATGCCAAAAGGGGTTGGATTTTGGATAACCTAAACATCTCTCATCTAGACTACTACTATCTGTTCTTGGCTAGCCTGAGCTTTCTCAACTTGCTCTTCTTTCTCCTGGTTTCCAAGTACTACGTTTATAATGCAGACGCGAGGGAATCTAAGGGAGACTTTGCCGTGGAAACTTTGCCTAGCAAAACTTCAGCTCAAGATCTTAAAGATGCCTCAAATAGTCTCTATTTATGA

Protein Analysis

574

Amino Acids

64.59

Weight (kDa)

8.88

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 14 - 484 4e-09 Major Facilitator Superfamily
PTR2 PF00854 68 - 504 2.4e-101 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 701, 1620
Acc36I ACCTGC 1 cut(s) 819
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AccB7I CCANNNNNTGG 1 cut(s) 590
AccII CGCG 1 cut(s) 1631
AciI CCGC 1 cut(s) 225
AclWI GGATC 1 cut(s) 1160
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 3 cut(s) 639, 652, 1665
AfaI GTAC 6 cut(s) 374, 400, 628, 767, 1415, 1610
AfiI CCNNNNNNNGG 6 cut(s) 167, 590, 672, 809, 828, 873
AgsI TTSAA 3 cut(s) 317, 484, 548
AjnI CCWGG 2 cut(s) 69, 1596
AleI CACNNNNGTG 1 cut(s) 1343
Alw21I GWGCWC 1 cut(s) 1098
Alw26I GTCTC 3 cut(s) 1058, 1641, 1718
AlwI GGATC 1 cut(s) 1160
AoxI GGCC 3 cut(s) 196, 592, 1180
ApeKI GCWGC 3 cut(s) 94, 845, 1162
ApoI RAATTY 1 cut(s) 782
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
Asp718I GGTACC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 860, 1025
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 3 cut(s) 861, 1135, 1474
AsuNHI GCTAGC 2 cut(s) 259, 1562
AvaII GGWCC 2 cut(s) 860, 1025
BaeGI GKGCMC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 1098
BbvI GCAGC 3 cut(s) 81, 857, 1149
BccI CCATC 3 cut(s) 37, 298, 539
BceAI ACGGC 1 cut(s) 1640
BciT130I CCWGG 2 cut(s) 71, 1598
BciVI GTATCC 1 cut(s) 870
BclI TGATCA 2 cut(s) 793, 918
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 3 cut(s) 1058, 1641, 1718
BfuAI ACCTGC 1 cut(s) 819
BfuI GTATCC 1 cut(s) 870
BglII AGATCT 1 cut(s) 1690
BisI GCNGC 3 cut(s) 95, 846, 1163
BlpI GCTNAGC 1 cut(s) 752
BlsI GCNGC 3 cut(s) 96, 847, 1164
BmcAI AGTACT 1 cut(s) 1610
Bme1390I CCNGG 3 cut(s) 71, 825, 1598
Bme18I GGWCC 2 cut(s) 860, 1025
BmgT120I GGNCC 2 cut(s) 860, 1025
BmiI GGNNCC 4 cut(s) 400, 717, 930, 1408
BmrFI CCNGG 3 cut(s) 71, 825, 1598
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 3 cut(s) 71, 175, 1690
BmtI GCTAGC 2 cut(s) 263, 1566
BmuI ACTGGG 1 cut(s) 145
BoxI GACNNNNGTC 2 cut(s) 212, 896
BplI GAGNNNNNCTC 2 cut(s) 969, 1001
BpmI CTGGAG 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 1568
Bpu1102I GCTNAGC 1 cut(s) 752
BpuEI CTTGAG 2 cut(s) 957, 1671
BpuMI CCSGG 1 cut(s) 825
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 5 cut(s) 301, 420, 823, 872, 1656
BsaWI WCCGGW 1 cut(s) 1117
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 6 cut(s) 167, 590, 672, 809, 828, 873
Bse1I ACTGG 5 cut(s) 140, 209, 397, 491, 887
Bse3DI GCAATG 2 cut(s) 216, 378
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 2 cut(s) 71, 1598
BseDI CCNNGG 5 cut(s) 301, 420, 823, 872, 1656
BseGI GGATG 3 cut(s) 48, 159, 498
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 6 cut(s) 167, 590, 672, 809, 828, 873
BseMI GCAATG 2 cut(s) 216, 378
BseMII CTCAG 4 cut(s) 743, 1071, 1325, 1559
BseNI ACTGG 5 cut(s) 140, 209, 397, 491, 887
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 3 cut(s) 81, 857, 1149
BseYI CCCAGC 1 cut(s) 1325
BsgI GTGCAG 2 cut(s) 80, 447
Bsh1236I CGCG 1 cut(s) 1631
Bsh1285I CGRYCG 1 cut(s) 1105
BshFI GGCC 3 cut(s) 198, 594, 1182
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 1105
BsiHKAI GWGCWC 1 cut(s) 1098
BsiSI CCGG 2 cut(s) 825, 1118
BslFI GGGAC 4 cut(s) 157, 648, 707, 1289
BslI CCNNNNNNNGG 6 cut(s) 167, 590, 672, 809, 828, 873
BsmAI GTCTC 3 cut(s) 1058, 1641, 1718
BsmFI GGGAC 4 cut(s) 157, 648, 707, 1289
BsnI GGCC 3 cut(s) 198, 594, 1182
Bsp1286I GDGCHC 2 cut(s) 568, 1098
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 5 cut(s) 793, 918, 1102, 1152, 1690
Bsp1720I GCTNAGC 1 cut(s) 752
Bsp19I CCATGG 2 cut(s) 420, 872
BspACI CCGC 1 cut(s) 225
BspANI GGCC 3 cut(s) 198, 594, 1182
BspCNI CTCAG 4 cut(s) 744, 1070, 1324, 1560
BspFNI CGCG 1 cut(s) 1631
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 4 cut(s) 400, 717, 930, 1408
BspMI ACCTGC 1 cut(s) 819
BspOI GCTAGC 2 cut(s) 263, 1566
BspPI GGATC 1 cut(s) 1160
BspQI GCTCTTC 3 cut(s) 325, 1391, 1592
BspT107I GGYRCC 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 216, 378
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 5 cut(s) 140, 209, 397, 491, 887
BssECI CCNNGG 5 cut(s) 301, 420, 823, 872, 1656
BssMI GATC 5 cut(s) 793, 918, 1102, 1152, 1690
BssT1I CCWWGG 2 cut(s) 420, 872
Bst2UI CCWGG 2 cut(s) 71, 1598
Bst4CI ACNGT 6 cut(s) 109, 148, 365, 1263, 1282, 1471
Bst6I CTCTTC 5 cut(s) 121, 325, 756, 1391, 1592
BstAPI GCANNNNNTGC 1 cut(s) 649
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 2 cut(s) 261, 1564
BstDEI CTNAG 8 cut(s) 281, 752, 1057, 1238, 1311, 1448, 1568, 1641
BstDSI CCRYGG 4 cut(s) 301, 420, 872, 1656
BstENI CCTNNNNNAGG 2 cut(s) 670, 807
BstF5I GGATG 3 cut(s) 48, 159, 498
BstFNI CGCG 1 cut(s) 1631
BstKTI GATC 5 cut(s) 796, 921, 1105, 1155, 1693
BstMAI GTCTC 3 cut(s) 1058, 1641, 1718
BstMBI GATC 5 cut(s) 793, 918, 1102, 1152, 1690
BstMCI CGRYCG 1 cut(s) 1105
BstMWI GCNNNNNNNGC 6 cut(s) 179, 649, 748, 1220, 1331, 1398
BstNI CCWGG 2 cut(s) 71, 1598
BstNSI RCATGY 2 cut(s) 1053, 1496
BstPAI GACNNNNGTC 2 cut(s) 212, 896
BstSCI CCNGG 3 cut(s) 69, 823, 1596
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 1 cut(s) 1631
BstV1I GCAGC 3 cut(s) 81, 857, 1149
BstX2I RGATCY 1 cut(s) 1690
BstYI RGATCY 1 cut(s) 1690
BsuI GTATCC 1 cut(s) 870
BsuRI GGCC 3 cut(s) 198, 594, 1182
BtgI CCRYGG 4 cut(s) 301, 420, 872, 1656
BtsCI GGATG 3 cut(s) 48, 159, 498
BtsI GCAGTG 2 cut(s) 270, 1157
BtsIMutI CAGTG 6 cut(s) 12, 114, 270, 813, 894, 1157
BveI ACCTGC 1 cut(s) 819
Cac8I GCNNGC 2 cut(s) 261, 1564
CciI TCATGA 1 cut(s) 745
Cfr13I GGNCC 2 cut(s) 860, 1025
CseI GACGC 2 cut(s) 265, 1637
CsiI ACCWGGT 1 cut(s) 69
Csp6I GTAC 6 cut(s) 373, 399, 627, 766, 1414, 1609
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviQI GTAC 6 cut(s) 373, 399, 627, 766, 1414, 1609
DdeI CTNAG 8 cut(s) 281, 752, 1057, 1238, 1311, 1448, 1568, 1641
DpnI GATC 5 cut(s) 795, 920, 1104, 1154, 1692
DpnII GATC 5 cut(s) 793, 918, 1102, 1152, 1690
Eam1104I CTCTTC 5 cut(s) 121, 325, 756, 1391, 1592
EarI CTCTTC 5 cut(s) 121, 325, 756, 1391, 1592
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 420, 872
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 860, 1025
Eco57I CTGAAG 3 cut(s) 639, 652, 1665
EcoNI CCTNNNNNAGG 2 cut(s) 670, 807
EcoRII CCWGG 2 cut(s) 69, 1596
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 2 cut(s) 420, 872
ErhI CCWWGG 2 cut(s) 420, 872
FalI AAGNNNNNCTT 2 cut(s) 1634, 1666
FaqI GGGAC 4 cut(s) 157, 648, 707, 1289
FbaI TGATCA 2 cut(s) 793, 918
Fnu4HI GCNGC 3 cut(s) 95, 846, 1163
FokI GGATG 3 cut(s) 55, 166, 505
Fsp4HI GCNGC 3 cut(s) 95, 846, 1163
GluI GCNGC 3 cut(s) 95, 846, 1163
GsaI CCCAGC 1 cut(s) 1329
GsuI CTGGAG 1 cut(s) 1029
HaeIII GGCC 3 cut(s) 198, 594, 1182
HapII CCGG 2 cut(s) 825, 1118
HgaI GACGC 2 cut(s) 265, 1637
HinfI GANTC 4 cut(s) 462, 661, 818, 1637
HpaII CCGG 2 cut(s) 825, 1118
HphI GGTGA 3 cut(s) 861, 1135, 1474
Hpy166II GTNNAC 2 cut(s) 768, 860
Hpy188I TCNGA 4 cut(s) 389, 658, 778, 788
Hpy188III TCNNGA 8 cut(s) 151, 535, 548, 746, 836, 1204, 1538, 1688
Hpy8I GTNNAC 2 cut(s) 768, 860
HpyAV CCTTC 6 cut(s) 95, 487, 663, 676, 813, 1227
HpyCH4III ACNGT 6 cut(s) 109, 148, 365, 1263, 1282, 1471
HpyCH4IV ACGT 2 cut(s) 126, 1614
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 649, 748, 1220, 1331, 1398
HpyF3I CTNAG 8 cut(s) 281, 752, 1057, 1238, 1311, 1448, 1568, 1641
HpySE526I ACGT 2 cut(s) 126, 1614
KpnI GGTACC 1 cut(s) 402
Ksp22I TGATCA 2 cut(s) 793, 918
Kzo9I GATC 5 cut(s) 793, 918, 1102, 1152, 1690
LguI GCTCTTC 3 cut(s) 325, 1391, 1592
LmnI GCTCC 2 cut(s) 170, 739
Lsp1109I GCAGC 3 cut(s) 81, 857, 1149
LweI GCATC 3 cut(s) 71, 175, 1690
MabI ACCWGGT 1 cut(s) 69
MaeII ACGT 2 cut(s) 126, 1614
MaeIII GTNAC 5 cut(s) 109, 127, 267, 889, 1066
MalI GATC 5 cut(s) 795, 920, 1104, 1154, 1692
MboI GATC 5 cut(s) 793, 918, 1102, 1152, 1690
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 1690
MhlI GDGCHC 2 cut(s) 568, 1098
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 2 cut(s) 608, 1487
MseI TTAA 2 cut(s) 309, 1695
MslI CAYNNNNRTG 4 cut(s) 292, 611, 1205, 1343
MspA1I CMGCKG 1 cut(s) 848
MspI CCGG 2 cut(s) 825, 1118
MspR9I CCNGG 3 cut(s) 71, 825, 1598
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 2 cut(s) 71, 1598
MvnI CGCG 1 cut(s) 1631
MwoI GCNNNNNNNGC 6 cut(s) 179, 649, 748, 1220, 1331, 1398
NciI CCSGG 1 cut(s) 825
NcoI CCATGG 2 cut(s) 420, 872
NdeII GATC 5 cut(s) 793, 918, 1102, 1152, 1690
NheI GCTAGC 2 cut(s) 259, 1562
NlaIV GGNNCC 4 cut(s) 400, 717, 930, 1408
NmuCI GTSAC 4 cut(s) 109, 127, 267, 889
NspI RCATGY 2 cut(s) 1053, 1496
OliI CACNNNNGTG 1 cut(s) 1343
PagI TCATGA 1 cut(s) 745
PciSI GCTCTTC 3 cut(s) 325, 1391, 1592
PfeI GAWTC 3 cut(s) 462, 818, 1637
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 3 cut(s) 96, 847, 1164
Ple19I CGATCG 1 cut(s) 1105
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
PshAI GACNNNNGTC 2 cut(s) 212, 896
PsiI TTATAA 2 cut(s) 701, 1620
Psp6I CCWGG 2 cut(s) 69, 1596
PspFI CCCAGC 1 cut(s) 1325
PspGI CCWGG 2 cut(s) 69, 1596
PspN4I GGNNCC 4 cut(s) 400, 717, 930, 1408
PspPI GGNCC 2 cut(s) 860, 1025
PsrI GAACNNNNNNTAC 2 cut(s) 382, 414
PsuI RGATCY 1 cut(s) 1690
PvuI CGATCG 1 cut(s) 1105
PvuII CAGCTG 1 cut(s) 848
RsaI GTAC 6 cut(s) 374, 400, 628, 767, 1415, 1610
RsaNI GTAC 6 cut(s) 373, 399, 627, 766, 1414, 1609
RseI CAYNNNNRTG 4 cut(s) 292, 611, 1205, 1343
SapI GCTCTTC 3 cut(s) 325, 1391, 1592
SaqAI TTAA 2 cut(s) 309, 1695
SatI GCNGC 3 cut(s) 95, 846, 1163
Sau3AI GATC 5 cut(s) 793, 918, 1102, 1152, 1690
Sau96I GGNCC 2 cut(s) 860, 1025
ScaI AGTACT 1 cut(s) 1610
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 3 cut(s) 71, 825, 1598
SduI GDGCHC 2 cut(s) 568, 1098
SexAI ACCWGGT 1 cut(s) 69
SfaNI GCATC 3 cut(s) 71, 175, 1690
SinI GGWCC 2 cut(s) 860, 1025
SmiMI CAYNNNNRTG 4 cut(s) 292, 611, 1205, 1343
SmlI CTYRAG 2 cut(s) 972, 1686
SmoI CTYRAG 2 cut(s) 972, 1686
SsiI CCGC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 69, 823, 1596
StyI CCWWGG 2 cut(s) 420, 872
TaaI ACNGT 6 cut(s) 109, 148, 365, 1263, 1282, 1471
TaiI ACGT 2 cut(s) 129, 1617
TaqI TCGA 1 cut(s) 900
TatI WGTACW 3 cut(s) 372, 765, 1608
TfiI GAWTC 3 cut(s) 462, 818, 1637
Tru1I TTAA 2 cut(s) 309, 1695
Tru9I TTAA 2 cut(s) 309, 1695
TscAI CASTG 6 cut(s) 19, 114, 270, 820, 894, 1164
TseFI GTSAC 4 cut(s) 109, 127, 267, 889
TseI GCWGC 3 cut(s) 94, 845, 1162
Tsp45I GTSAC 4 cut(s) 109, 127, 267, 889
TspDTI ATGAA 6 cut(s) 17, 734, 795, 1066, 1288, 1409
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 6 cut(s) 19, 114, 270, 820, 894, 1164
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 860, 1025
XagI CCTNNNNNAGG 2 cut(s) 670, 807
XapI RAATTY 1 cut(s) 782
XbaI TCTAGA 1 cut(s) 1537
XceI RCATGY 2 cut(s) 1053, 1496
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 870
ZrmI AGTACT 1 cut(s) 1610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.