Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006916

Physical Location & Seq

Genomic Coordinates Forward (+)

29464798 .. 29466739

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCACTCTCCAACAAACCCCAATCTCTCTCCAATCCAAAACCCCACCGCCACCGCTCTCCTCCGCCCTCACCGCCAGATCCACCGCCATCTCCTTCTCCTCCACATTCACCCCCCTCAACCTCAAACTCACCGCCGCAGCAGCATCCACCTCCGTCCGCCGCGGAGGCGGCGCTTGCGGCGCGCGGATGAACGCCACCGCCGCCGCAAGCTACGCGGCGGCTCTGGCCGACGTGGCGATATCCAACAACACCCTGGACGCCACCGTCGCCGACGTGGAGAAGGTCGAGAAGTTCTTCGCGGAGCCGTCGGTGTTCGACTTCTTCACCAACCCCACAGTCAACCTGGAGAAGAAGCGCGGCGTCCTCGACGAAATCGCCAAGTCGTCGGCGCTGCAGCCCCACACGGTGAACTTCCTCAACATTTTGGTTGAGGCCAAGAGAATCGACGTCATCAAGGACATTGTCAAGGAGTTTGAGATCGTTTACAACAAGCTTACGGATACGGAGCTGGCCATAGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCCAAGCAGGTGCAGAAGCTCACTGGCGCCAAGAATGTCAGGATCAAGTCGGAGATTGATCCCAGTTTGGTTGCGGGGTTCACTGTGAGATATGGCAATTCTGGGTCTAAGCTGATTGATATGAGTGTCAAGAAGCAGCTCGAGGAGATTGCTGCTCAGCTTGATTTGGGTGACATCAAGCTCAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0006810 GO:0006857 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010243 GO:0014070 GO:0015833 GO:0022857 GO:0033993 GO:0035672 GO:0035673 GO:0042221 GO:0042493 GO:0042538 GO:0042742 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043200 GO:0043201 GO:0043207 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0080052 GO:0080053 GO:0097305 GO:0098542 GO:1901698 GO:1901700 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

251

Amino Acids

26.85

Weight (kDa)

8.87

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	69 - 242	1.8e-40	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20841 FvH4_2g20850
malus_domestica	MD05G1192100.v1.1
prunus_persica	Prupe.8G218400_v2.0.a1 Prupe.8G218400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287241 RchiOBHm_Chr6g0287251
rosa_laevigata	RLG00000012513 RLG00000012514
rosa_multiflora	Rmu_sc0005297.1_g000026 Rmu_sc0005297.1_g000027
rosa_roxburghii	Rroxscaffold_7G00181610 Rroxscaffold_7G00181620
rosa_rugosa	Rorug06G0186100 Rorug06G0186200
rosa_samantha	Rh6AG297500 Rh6BG303000 Rh6BG303100 Rh6CG306900 Rh6CG307000 Rh6CG311100 Rh6CG311200 Rh6DG294700 Rh6DG294800
rosa_wichuraiana	Rw6G025710 Rw6G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	6 cut(s)	165, 185, 187, 218, 302, 360
AclWI	GGATC	3 cut(s)	75, 614, 617
AcoI	YGGCCR	3 cut(s)	3, 228, 513
AcyI	GRCGYC	4 cut(s)	261, 363, 450, 591
AdeI	CACNNNGTG	1 cut(s)	409
AjiI	CACGTC	2 cut(s)	235, 277
AjnI	CCWGG	2 cut(s)	255, 345
Alw21I	GWGCWC	1 cut(s)	527
AlwI	GGATC	3 cut(s)	75, 614, 617
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	4 cut(s)	3, 228, 435, 513
ApeKI	GCWGC	7 cut(s)	140, 143, 394, 397, 547, 700, 716
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	7 cut(s)	176, 185, 187, 360, 394, 559, 593
AsuHPI	GGTGA	7 cut(s)	64, 103, 124, 319, 421, 544, 746
AvaI	CYCGRG	1 cut(s)	704
BalI	TGGCCA	2 cut(s)	5, 515
BanI	GGYRCC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	2 cut(s)	257, 347
BciVI	GTATCC	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	395
BfoI	RGCGCY	3 cut(s)	177, 395, 594
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	496
BglI	GCCNNNNNGGC	2 cut(s)	168, 236
BlpI	GCTNAGC	1 cut(s)	720
Bme1390I	CCNGG	2 cut(s)	257, 347
BmeT110I	CYCGRG	1 cut(s)	704
BmgBI	CACGTC	2 cut(s)	235, 277
BmiI	GGNNCC	2 cut(s)	306, 592
BmrFI	CCNGG	2 cut(s)	257, 347
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	621
BpmI	CTGGAG	2 cut(s)	368, 560
Bpu1102I	GCTNAGC	1 cut(s)	720
BsaHI	GRCGYC	4 cut(s)	261, 363, 450, 591
BsaJI	CCNNGG	2 cut(s)	163, 255
Bse1I	ACTGG	2 cut(s)	592, 627
BseBI	CCWGG	2 cut(s)	257, 347
BseDI	CCNNGG	2 cut(s)	163, 255
BseGI	GGATG	2 cut(s)	146, 195
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	592, 627
BsePI	GCGCGC	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	52, 91, 722
BseXI	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	6 cut(s)	165, 185, 187, 218, 302, 360
BshFI	GGCC	4 cut(s)	5, 230, 437, 515
BshNI	GGYRCC	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	704
BsnI	GGCC	4 cut(s)	5, 230, 437, 515
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	80, 480, 606, 622
Bsp1720I	GCTNAGC	1 cut(s)	720
BspANI	GGCC	4 cut(s)	5, 230, 437, 515
BspCNI	CTCAG	1 cut(s)	733
BspFNI	CGCG	6 cut(s)	165, 185, 187, 218, 302, 360
BspLI	GGNNCC	2 cut(s)	306, 592
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	3 cut(s)	75, 614, 617
BspT107I	GGYRCC	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	592, 627
BssECI	CCNNGG	2 cut(s)	163, 255
BssHII	GCGCGC	1 cut(s)	183
BssMI	GATC	4 cut(s)	80, 480, 606, 622
BssNI	GRCGYC	4 cut(s)	261, 363, 450, 591
Bst2UI	CCWGG	2 cut(s)	257, 347
Bst4CI	ACNGT	4 cut(s)	268, 340, 409, 649
BstACI	GRCGYC	4 cut(s)	261, 363, 450, 591
BstC8I	GCNNGC	4 cut(s)	178, 185, 211, 513
BstDEI	CTNAG	2 cut(s)	672, 720
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	146, 195
BstFNI	CGCG	6 cut(s)	165, 185, 187, 218, 302, 360
BstH2I	RGCGCY	3 cut(s)	177, 395, 594
BstHHI	GCGC	7 cut(s)	176, 185, 187, 360, 394, 559, 593
BstKTI	GATC	4 cut(s)	83, 483, 609, 625
BstMBI	GATC	4 cut(s)	80, 480, 606, 622
BstNI	CCWGG	2 cut(s)	257, 347
BstSCI	CCNGG	2 cut(s)	255, 345
BstSFI	CTRYAG	1 cut(s)	395
BstUI	CGCG	6 cut(s)	165, 185, 187, 218, 302, 360
BstV1I	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	4 cut(s)	5, 230, 437, 515
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	2 cut(s)	235, 277
BtsCI	GGATG	2 cut(s)	146, 195
BtsIMutI	CAGTG	2 cut(s)	585, 645
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	4 cut(s)	178, 185, 211, 513
CfoI	GCGC	7 cut(s)	176, 185, 187, 360, 394, 559, 593
Cfr42I	CCGCGG	1 cut(s)	166
CseI	GACGC	2 cut(s)	269, 352
DdeI	CTNAG	2 cut(s)	672, 720
DinI	GGCGCC	1 cut(s)	592
DpnI	GATC	4 cut(s)	82, 482, 608, 624
DpnII	GATC	4 cut(s)	80, 480, 606, 622
DraIII	CACNNNGTG	1 cut(s)	409
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	3 cut(s)	3, 228, 513
EciI	GGCGGA	2 cut(s)	55, 149
Ecl136II	GAGCTC	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	255, 345
EcoRV	GATATC	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	527
EgeI	GGCGCC	1 cut(s)	592
EheI	GGCGCC	1 cut(s)	592
FaiI	YATR	4 cut(s)	518, 657, 686, 754
FauI	CCCGC	1 cut(s)	631
FokI	GGATG	2 cut(s)	133, 202
FriOI	GRGCYC	1 cut(s)	527
GlaI	GCGC	7 cut(s)	175, 184, 186, 359, 393, 558, 592
GsuI	CTGGAG	2 cut(s)	368, 560
HaeII	RGCGCY	3 cut(s)	177, 395, 594
HaeIII	GGCC	4 cut(s)	5, 230, 437, 515
HgaI	GACGC	2 cut(s)	269, 352
HhaI	GCGC	7 cut(s)	176, 185, 187, 360, 394, 559, 593
Hin1I	GRCGYC	4 cut(s)	261, 363, 450, 591
Hin6I	GCGC	7 cut(s)	174, 183, 185, 358, 392, 557, 591
HinP1I	GCGC	7 cut(s)	174, 183, 185, 358, 392, 557, 591
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	444, 542
HphI	GGTGA	7 cut(s)	64, 103, 124, 319, 421, 544, 746
Hpy166II	GTNNAC	4 cut(s)	343, 412, 487, 645
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	3 cut(s)	289, 604, 694
Hpy8I	GTNNAC	4 cut(s)	343, 412, 487, 645
Hpy99I	CGWCG	7 cut(s)	236, 272, 278, 313, 374, 391, 452
HpyAV	CCTTC	2 cut(s)	106, 277
HpyCH4III	ACNGT	4 cut(s)	268, 340, 409, 649
HpyCH4IV	ACGT	3 cut(s)	234, 276, 450
HpyCH4V	TGCA	2 cut(s)	397, 577
HpyF3I	CTNAG	2 cut(s)	672, 720
HpySE526I	ACGT	3 cut(s)	234, 276, 450
Hsp92I	GRCGYC	4 cut(s)	261, 363, 450, 591
HspAI	GCGC	7 cut(s)	174, 183, 185, 358, 392, 557, 591
KasI	GGCGCC	1 cut(s)	590
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	80, 480, 606, 622
LmnI	GCTCC	2 cut(s)	304, 508
Lsp1109I	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
LweI	GCATC	1 cut(s)	155
MaeII	ACGT	3 cut(s)	234, 276, 450
MaeIII	GTNAC	1 cut(s)	734
MalI	GATC	4 cut(s)	82, 482, 608, 624
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	4 cut(s)	80, 480, 606, 622
MboII	GAAGA	3 cut(s)	289, 316, 364
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	527
MlsI	TGGCCA	2 cut(s)	5, 515
MluCI	AATT	1 cut(s)	661
MluNI	TGGCCA	2 cut(s)	5, 515
Mly113I	GGCGCC	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	3 cut(s)	37, 270, 594
Mox20I	TGGCCA	2 cut(s)	5, 515
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	2 cut(s)	5, 515
Msp20I	TGGCCA	2 cut(s)	5, 515
MspA1I	CMGCKG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	257, 347
MvaI	CCWGG	2 cut(s)	257, 347
MvnI	CGCG	6 cut(s)	165, 185, 187, 218, 302, 360
NarI	GGCGCC	1 cut(s)	591
NdeII	GATC	4 cut(s)	80, 480, 606, 622
NlaIV	GGNNCC	2 cut(s)	306, 592
NmuCI	GTSAC	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	704
PaqCI	CACCTGC	1 cut(s)	562
PauI	GCGCGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	444
PflFI	GACNNNGTC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	550
PluTI	GGCGCC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	255, 345
PspGI	CCWGG	2 cut(s)	255, 345
PspN4I	GGNNCC	2 cut(s)	306, 592
PspXI	VCTCGAGB	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	464
PteI	GCGCGC	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	527
SacII	CCGCGG	1 cut(s)	166
Sau3AI	GATC	4 cut(s)	80, 480, 606, 622
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	257, 347
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	1 cut(s)	155
SfcI	CTRYAG	1 cut(s)	395
SfoI	GGCGCC	1 cut(s)	592
Sfr274I	CTCGAG	1 cut(s)	704
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	1 cut(s)	661
SspDI	GGCGCC	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	255, 345
TaaI	ACNGT	4 cut(s)	268, 340, 409, 649
TaiI	ACGT	3 cut(s)	237, 279, 453
TaqI	TCGA	5 cut(s)	288, 318, 369, 447, 705
TasI	AATT	1 cut(s)	661
TauI	GCSGC	9 cut(s)	140, 165, 174, 183, 206, 209, 221, 224, 363
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	2 cut(s)	592, 652
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	7 cut(s)	140, 143, 394, 397, 547, 700, 716
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	3 cut(s)	145, 515, 521
TspRI	CASTG	2 cut(s)	592, 652
Tth111I	GACNNNGTC	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 343
XhoI	CTCGAG	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.