RLG00000012513

Peptide transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
19407312 .. 19410481
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012513

Sequence Viewer

Length: 1824 bp
ATGGCAAAGGTAGAAGAGAAGGGCTCTGCATATGGAAGAGATGATCAGACACAAGACGGGACTGTGGATCTCAAAGGCAGACCTGTTCTGAGATCAAACACTGGCAGATGGACAGCTTGTTCCTTCATCGTAGGGTATGAAGTGTTTGAGAGGATGGCATATTACGGAATTGCGTCAAATTTGGTAGTGTATCTGACGGATAAGCTGCATGAAGGCACAGTGACATCTTCAAACAACGTCACAAACTGGGTTGGGACGGTGTGGATGACACCCCTTCTGGGTGCTTATATTGCAGATGCTCATCTCGGCCGATACTGGACTTTTGTCATTGCTTCCGGCATATATCTTGTGGGAATGTCCTTATTAACCCTAGCAGTTTCACTACCTGCCCTAAGACCACCATCATGTGGCAGTGGAGTTAAACTTGAAGATTGTGACAAAAGAGCCTCACCAGTCCAAGTGGGTATATTCTACTGTGCCTTGTACATAATCGCAGTTGGAACTGGGGGCACCAAGCCTAACATATCAACCATGGGTGCTGACCAATTTGATGAGTTTGAACCTAAAGAGAGGATCCAAAAGCTCTCCTTCTTCAACTGGTGGATGTTCAGCATATTCTTTGGCACCCTTTTCTCAAACACCTTCTTGGTTTACATACAAGACAAAGTTGGTTGGACCCTTGGCTATGGTCTTCCAACAGTTGGTCTTGCAATCTCTGTCACGGTGTTCTTATTTGGCACCAAGTTTTATAGGCACAAATTGCCTTCAGAGAGTCCTTTCAGCACAATAGCTCATGTGCTTGTGGCTGCTATAAGGAAGTGGAGGGTAACTGTCCCAGATGACCTAAAAGAGCTTCATGAGCTGAGCTTGGAAAAGTACACAAAAGCTGGTAAATTCAGAATTGACCACTCCTCTTCATTAAGATTCCTTGACAAAGCAGCTGTAAAGAGTGGACCAACCTCACCATGGATGCTACGCCCAGTGACCCAAGTTGAACAAACAAAGCAAATGGTCAAAATGGTTCCTATCCTGGTTGCATCATTCATACCAAGCACCATGTTAGCTCAAATAGGAACTCTTTTTGTCAAACAAGGCAAAACACTAGACAGAAGGATGGGTCCTGGTTTTGAAATCCCTCCTGCATGTCTCTCAGCATTCGTAACAATCTTCATGCTGATAAGCCTTGTACTGTATGACCGCTACTTTGTTCCAATAGTCCGGCGATACACCAAAAACCCAAGAGGGATCACATTGCTGCAGAGACTAGGCATTGGTCTTGTTTTGCACACGATTATCATGATCACGGCTTTCTTGGCTGAAAGGAGGAGGTTGAGTGTTATACAAGAAAACCACCTCTTTGACAAAAAGGATACAGTTCCCCTCACAATTTTCATTCTGTTCCCTCAATTTGCTTTGATGGGTATCGCTGATTCCTTTGTGGAAACAGCCAAGATTGAATTTTTCTATGATCAAGCACCAGAAGGCATGAAAAGCTTGGGGACCTCATATTTCACTACTAGCTTGGGAATTGGGAGTTTCCTCAGTAGTTTTATTCTATCAACAGTTTCCAACTTCACCAAGAAACATACACACAAGGGTTGGATTTTGGATAACCTAAACACCTCTCATTTAGACTACTATTATCTGTTTTTGGCTGTCTTGACCTTTCTCAACTTCCTCTTCTTTCTCGTGGTTGCAAAATACTACGTCTACAATGCAGAGTTGAGGGACCCTGAGGGAGAATTTGCCATGGACACTTTGCCAAACAAAAGTACTTCAGGTCTAGATCGCACAGTAGACTCAAAAACTTCACTTATAAGCTGA

Protein Analysis

608

Amino Acids

68.15

Weight (kDa)

9.14

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 51 - 515 5.4e-07 Major Facilitator Superfamily
PTR2 PF00854 105 - 535 4.7e-102 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1817
Acc36I ACCTGC 1 cut(s) 394
AccB1I GGYRCC 3 cut(s) 509, 623, 737
AccB7I CCANNNNNTGG 2 cut(s) 407, 701
AccI GTMKAC 2 cut(s) 1710, 1797
AciI CCGC 1 cut(s) 1198
AclWI GGATC 4 cut(s) 75, 568, 581, 1253
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 4 cut(s) 178, 893, 1457, 1742
AcuI CTGAAG 2 cut(s) 750, 1761
AfaI GTAC 4 cut(s) 485, 878, 1188, 1774
AfiI CCNNNNNNNGG 4 cut(s) 278, 407, 701, 966
AgsI TTSAA 7 cut(s) 231, 428, 560, 595, 995, 1130, 1457
AjnI CCWGG 2 cut(s) 1029, 1120
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
Alw26I GTCTC 2 cut(s) 1151, 1255
AlwI GGATC 4 cut(s) 75, 568, 581, 1253
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 4 cut(s) 205, 806, 938, 1255
ApoI RAATTY 4 cut(s) 178, 893, 1457, 1742
ArsI GACNNNNNNTTYG 2 cut(s) 1187, 1219
AspS9I GGNCC 5 cut(s) 675, 953, 1118, 1500, 1729
AsuHPI GGTGA 3 cut(s) 441, 954, 1567
AvaII GGWCC 5 cut(s) 675, 953, 1118, 1500, 1729
AxyI CCTNAGG 1 cut(s) 1734
BaeGI GKGCMC 1 cut(s) 512
BamHI GGATCC 1 cut(s) 573
BanI GGYRCC 3 cut(s) 509, 623, 737
BanII GRGCYC 1 cut(s) 26
BauI CACGAG 1 cut(s) 1688
BbsI GAAGAC 1 cut(s) 683
BbvI GCAGC 4 cut(s) 192, 793, 950, 1242
BccI CCATC 5 cut(s) 102, 148, 409, 1108, 1411
BceAI ACGGC 1 cut(s) 1320
BciT130I CCWGG 2 cut(s) 1031, 1122
BciVI GTATCC 1 cut(s) 1363
BclI TGATCA 3 cut(s) 43, 1299, 1468
BcoDI GTCTC 2 cut(s) 1151, 1255
BfaI CTAG 5 cut(s) 371, 1103, 1265, 1518, 1784
BfmI CTRYAG 1 cut(s) 1256
BfuAI ACCTGC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 1363
BisI GCNGC 4 cut(s) 206, 807, 939, 1256
BlpI GCTNAGC 1 cut(s) 863
BlsI GCNGC 4 cut(s) 207, 808, 940, 1257
BmcAI AGTACT 1 cut(s) 1774
Bme1390I CCNGG 2 cut(s) 1031, 1122
Bme18I GGWCC 5 cut(s) 675, 953, 1118, 1500, 1729
BmgT120I GGNCC 5 cut(s) 675, 953, 1118, 1500, 1729
BmrFI CCNGG 2 cut(s) 1031, 1122
BmrI ACTGGG 3 cut(s) 256, 513, 974
BmsI GCATC 3 cut(s) 286, 960, 1046
BmuI ACTGGG 3 cut(s) 256, 513, 974
BoxI GACNNNNGTC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 683
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu1102I GCTNAGC 1 cut(s) 863
BsaBI GATNNNNATC 2 cut(s) 300, 1421
BsaJI CCNNGG 4 cut(s) 531, 679, 965, 1749
BsaXI ACNNNNNCTCC 2 cut(s) 1318, 1348
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 407, 701, 966
Bse1I ACTGG 7 cut(s) 106, 251, 320, 452, 508, 602, 980
Bse21I CCTNAGG 1 cut(s) 1734
Bse3DI GCAATG 2 cut(s) 327, 1250
Bse8I GATNNNNATC 2 cut(s) 300, 1421
BseBI CCWGG 2 cut(s) 1031, 1122
BseDI CCNNGG 4 cut(s) 531, 679, 965, 1749
BseGI GGATG 5 cut(s) 159, 270, 609, 975, 1119
BseJI GATNNNNATC 2 cut(s) 300, 1421
BseLI CCNNNNNNNGG 4 cut(s) 278, 407, 701, 966
BseMI GCAATG 2 cut(s) 327, 1250
BseMII CTCAG 5 cut(s) 80, 854, 1164, 1555, 1725
BseNI ACTGG 7 cut(s) 106, 251, 320, 452, 508, 602, 980
BseRI GAGGAG 2 cut(s) 901, 1339
BseSI GKGCMC 1 cut(s) 512
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 192, 793, 950, 1242
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 1 cut(s) 309
BshNI GGYRCC 3 cut(s) 509, 623, 737
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 2 cut(s) 336, 1219
BslFI GGGAC 5 cut(s) 73, 268, 818, 1513, 1742
BslI CCNNNNNNNGG 4 cut(s) 278, 407, 701, 966
BsmAI GTCTC 2 cut(s) 1151, 1255
BsmFI GGGAC 5 cut(s) 73, 268, 818, 1513, 1742
BsmI GAATGC 1 cut(s) 1154
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 26, 512
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
Bsp1720I GCTNAGC 1 cut(s) 863
Bsp19I CCATGG 3 cut(s) 531, 965, 1749
BspACI CCGC 1 cut(s) 1198
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 5 cut(s) 81, 855, 1163, 1554, 1726
BspHI TCATGA 2 cut(s) 856, 1296
BspMAI CTGCAG 1 cut(s) 1260
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 4 cut(s) 75, 568, 581, 1253
BspT107I GGYRCC 3 cut(s) 509, 623, 737
BsrDI GCAATG 2 cut(s) 327, 1250
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 7 cut(s) 106, 251, 320, 452, 508, 602, 980
BssECI CCNNGG 4 cut(s) 531, 679, 965, 1749
BssMI GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
BssSI CACGAG 1 cut(s) 1688
BssT1I CCWWGG 4 cut(s) 531, 679, 965, 1749
Bst2BI CACGAG 1 cut(s) 1688
Bst2UI CCWGG 2 cut(s) 1031, 1122
Bst6I CTCTTC 4 cut(s) 9, 31, 919, 1685
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 483
BstDEI CTNAG 6 cut(s) 89, 392, 863, 1150, 1541, 1734
BstDSI CCRYGG 3 cut(s) 531, 965, 1749
BstF5I GGATG 5 cut(s) 159, 270, 609, 975, 1119
BstKTI GATC 8 cut(s) 46, 70, 95, 576, 1248, 1302, 1471, 1789
BstMAI GTCTC 2 cut(s) 1151, 1255
BstMBI GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 5 cut(s) 290, 760, 859, 1313, 1491
BstNI CCWGG 2 cut(s) 1031, 1122
BstNSI RCATGY 1 cut(s) 1146
BstPAI GACNNNNGTC 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 1029, 1120
BstSFI CTRYAG 1 cut(s) 1256
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 4 cut(s) 192, 793, 950, 1242
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 2 cut(s) 67, 573
BstYI RGATCY 2 cut(s) 67, 573
BstZI CGGCCG 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 1734
BsuI GTATCC 1 cut(s) 1363
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 3 cut(s) 531, 965, 1749
BtsCI GGATG 5 cut(s) 159, 270, 609, 975, 1119
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 4 cut(s) 99, 225, 418, 987
BveI ACCTGC 1 cut(s) 394
CciI TCATGA 2 cut(s) 856, 1296
Cfr13I GGNCC 5 cut(s) 675, 953, 1118, 1500, 1729
CseI GACGC 1 cut(s) 162
Csp6I GTAC 4 cut(s) 484, 877, 1187, 1773
CviQI GTAC 4 cut(s) 484, 877, 1187, 1773
DdeI CTNAG 6 cut(s) 89, 392, 863, 1150, 1541, 1734
DpnI GATC 8 cut(s) 45, 69, 94, 575, 1247, 1301, 1470, 1788
DpnII GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 4 cut(s) 9, 31, 919, 1685
EarI CTCTTC 4 cut(s) 9, 31, 919, 1685
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 4 cut(s) 531, 679, 965, 1749
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 5 cut(s) 675, 953, 1118, 1500, 1729
Eco52I CGGCCG 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 750, 1761
Eco81I CCTNAGG 1 cut(s) 1734
EcoO109I RGGNCCY 3 cut(s) 1118, 1500, 1729
EcoRII CCWGG 2 cut(s) 1029, 1120
EcoT14I CCWWGG 4 cut(s) 531, 679, 965, 1749
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 4 cut(s) 531, 679, 965, 1749
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 5 cut(s) 73, 268, 818, 1513, 1742
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 3 cut(s) 43, 1299, 1468
FblI GTMKAC 2 cut(s) 1710, 1797
Fnu4HI GCNGC 4 cut(s) 206, 807, 939, 1256
FokI GGATG 5 cut(s) 166, 277, 616, 982, 1126
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 4 cut(s) 206, 807, 939, 1256
FspBI CTAG 5 cut(s) 371, 1103, 1265, 1518, 1784
GluI GCNGC 4 cut(s) 206, 807, 939, 1256
HaeIII GGCC 1 cut(s) 309
HapII CCGG 2 cut(s) 336, 1219
HgaI GACGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 1492
HinfI GANTC 4 cut(s) 772, 924, 1430, 1799
HpaII CCGG 2 cut(s) 336, 1219
HphI GGTGA 3 cut(s) 441, 954, 1567
Hpy166II GTNNAC 5 cut(s) 652, 879, 953, 1711, 1798
Hpy188I TCNGA 5 cut(s) 48, 90, 195, 769, 899
Hpy188III TCNNGA 4 cut(s) 857, 1297, 1660, 1784
Hpy8I GTNNAC 5 cut(s) 652, 879, 953, 1711, 1798
HpyAV CCTTC 9 cut(s) 13, 133, 206, 284, 598, 652, 774, 1104, 1475
HpyCH4IV ACGT 2 cut(s) 237, 1707
HpyF10VI GCNNNNNNNGC 5 cut(s) 290, 760, 859, 1313, 1491
HpyF3I CTNAG 6 cut(s) 89, 392, 863, 1150, 1541, 1734
HpySE526I ACGT 2 cut(s) 237, 1707
KflI GGGWCCC 1 cut(s) 1729
Ksp22I TGATCA 3 cut(s) 43, 1299, 1468
Kzo9I GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
Lsp1109I GCAGC 4 cut(s) 192, 793, 950, 1242
LweI GCATC 3 cut(s) 286, 960, 1046
MaeI CTAG 5 cut(s) 371, 1103, 1265, 1518, 1784
MaeII ACGT 2 cut(s) 237, 1707
MaeIII GTNAC 7 cut(s) 220, 238, 434, 718, 826, 982, 1159
MalI GATC 8 cut(s) 45, 69, 94, 575, 1247, 1301, 1470, 1788
MboI GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
MboII GAAGA 9 cut(s) 26, 48, 219, 440, 583, 683, 906, 1159, 1672
MflI RGATCY 2 cut(s) 67, 573
MhlI GDGCHC 2 cut(s) 26, 512
MlyI GAGTC 2 cut(s) 781, 1793
MmeI TCCRAC 5 cut(s) 478, 653, 719, 1580, 1593
MseI TTAA 3 cut(s) 365, 420, 920
MslI CAYNNNNRTG 1 cut(s) 403
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 2 cut(s) 336, 1219
MspR9I CCNGG 2 cut(s) 1031, 1122
Mva1269I GAATGC 1 cut(s) 1154
MvaI CCWGG 2 cut(s) 1031, 1122
MwoI GCNNNNNNNGC 5 cut(s) 290, 760, 859, 1313, 1491
NcoI CCATGG 3 cut(s) 531, 965, 1749
NdeI CATATG 1 cut(s) 31
NdeII GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 5 cut(s) 220, 238, 434, 718, 982
NspI RCATGY 1 cut(s) 1146
PagI TCATGA 2 cut(s) 856, 1296
PctI GAATGC 1 cut(s) 1154
PfeI GAWTC 2 cut(s) 924, 1430
PflMI CCANNNNNTGG 2 cut(s) 407, 701
PkrI GCNGC 4 cut(s) 207, 808, 940, 1257
PleI GAGTC 2 cut(s) 780, 1793
PpsI GAGTC 2 cut(s) 780, 1793
PpuMI RGGWCCY 3 cut(s) 1118, 1500, 1729
PshAI GACNNNNGTC 1 cut(s) 323
PsiI TTATAA 1 cut(s) 1817
Psp5II RGGWCCY 3 cut(s) 1118, 1500, 1729
Psp6I CCWGG 2 cut(s) 1029, 1120
PspGI CCWGG 2 cut(s) 1029, 1120
PspPI GGNCC 5 cut(s) 675, 953, 1118, 1500, 1729
PspPPI RGGWCCY 3 cut(s) 1118, 1500, 1729
PstI CTGCAG 1 cut(s) 1260
PsuI RGATCY 2 cut(s) 67, 573
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 4 cut(s) 485, 878, 1188, 1774
RsaNI GTAC 4 cut(s) 484, 877, 1187, 1773
RseI CAYNNNNRTG 1 cut(s) 403
SaqAI TTAA 3 cut(s) 365, 420, 920
SatI GCNGC 4 cut(s) 206, 807, 939, 1256
Sau3AI GATC 8 cut(s) 43, 67, 92, 573, 1245, 1299, 1468, 1786
Sau96I GGNCC 5 cut(s) 675, 953, 1118, 1500, 1729
ScaI AGTACT 1 cut(s) 1774
SchI GAGTC 2 cut(s) 781, 1793
ScrFI CCNGG 2 cut(s) 1031, 1122
SduI GDGCHC 2 cut(s) 26, 512
SfaNI GCATC 3 cut(s) 286, 960, 1046
SfcI CTRYAG 1 cut(s) 1256
SinI GGWCC 5 cut(s) 675, 953, 1118, 1500, 1729
SmiMI CAYNNNNRTG 1 cut(s) 403
SsiI CCGC 1 cut(s) 1198
SspMI CTAG 5 cut(s) 371, 1103, 1265, 1518, 1784
StyD4I CCNGG 2 cut(s) 1029, 1120
StyI CCWWGG 4 cut(s) 531, 679, 965, 1749
TaiI ACGT 2 cut(s) 240, 1710
TatI WGTACW 4 cut(s) 483, 876, 1186, 1772
TfiI GAWTC 2 cut(s) 924, 1430
Tru1I TTAA 3 cut(s) 365, 420, 920
Tru9I TTAA 3 cut(s) 365, 420, 920
TscAI CASTG 4 cut(s) 106, 225, 418, 987
TseFI GTSAC 5 cut(s) 220, 238, 434, 718, 982
TseI GCWGC 4 cut(s) 205, 806, 938, 1255
Tsp45I GTSAC 5 cut(s) 220, 238, 434, 718, 982
TspDTI ATGAA 9 cut(s) 115, 153, 225, 845, 906, 1033, 1159, 1381, 1502
TspGWI ACGGA 2 cut(s) 180, 212
TspRI CASTG 4 cut(s) 106, 225, 418, 987
Van91I CCANNNNNTGG 2 cut(s) 407, 701
VpaK11BI GGWCC 5 cut(s) 675, 953, 1118, 1500, 1729
XapI RAATTY 4 cut(s) 178, 893, 1457, 1742
XbaI TCTAGA 1 cut(s) 1783
XceI RCATGY 1 cut(s) 1146
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XmiI GTMKAC 2 cut(s) 1710, 1797
XspI CTAG 5 cut(s) 371, 1103, 1265, 1518, 1784
ZrmI AGTACT 1 cut(s) 1774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.