Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006916

Physical Location & Seq

Genomic Coordinates Forward (+)

49563040 .. 49563849

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATCAAAATGGTTCCAATTTTGATTGCAACATTTTTACCAAGCATGATGTTAGCTCAAGGAGGAACTCTCTTTGTCAAACAAGGAATTACACTAGATAGAAGCATTGGACCACATTTTGATATTCCTCCAGCATGTCTCTCAGCATTTGTAACAATCTTCATGCTGATAAGCCTTGTGCTCTACGATCGCTACTTTGTTCCGGTGGTGCGGAAATATACGAAGAACCCTAGAGGGATCACACTGCTGCAGAGACTAGGCATTGGCCTTGTGTTGCACATCATCATCTTGATGACAGCTTTCTTCGCTGAAAGACGAAGGCTAAGTGTTATACAAGAAAATAAACTGTTTGGGAAAAGGGACACAGTTCCTCTCACAATTTTCATTCTCTTTCCTCAGTTTGCTTTGGCTGGGATTGCTGACACCTTTGTGGAAGTTGCAAAGATAGAGTTTTTCTATGACCAAGCACCACATGGCATGAAGAGCTTGGGAACCTCGTACTTCACTACTAGCTTGGGAATTGGGAGTTTCCTTAGTAGTTTTCTTCTATCAACAGTTGCAGACTTCACCAAGAAACATGCCAAAAGGGGTTGGATTTTGGATAACCTAAACATCTCTCATCTAGACTACTACTATCTGTTCTTGGCTAGCCTGAGCTTTCTCAACTTGCTCTTCTTTCTCCTGGTTTCCAAGTACTATGTTTATAATGCAGACGCGAGGGAATCTAAGGGAGACTTTGCCGTGGAAACTTTGCCTAGCAAAACTTCAGCTCAAGATCTTAAGGATGCCTCAAATAGTCTCTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0006810 GO:0006857 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010243 GO:0014070 GO:0015833 GO:0022857 GO:0033993 GO:0035672 GO:0035673 GO:0042221 GO:0042493 GO:0042538 GO:0042742 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043200 GO:0043201 GO:0043207 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0080052 GO:0080053 GO:0097305 GO:0098542 GO:1901698 GO:1901700 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

269

Amino Acids

30.35

Weight (kDa)

9.38

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	1 - 199	1e-40	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20841 FvH4_2g20850
malus_domestica	MD05G1192100.v1.1
prunus_persica	Prupe.8G218400_v2.0.a1 Prupe.8G218400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0287241 RchiOBHm_Chr6g0287251
rosa_laevigata	RLG00000012513 RLG00000012514
rosa_multiflora	Rmu_sc0005297.1_g000026 Rmu_sc0005297.1_g000027
rosa_roxburghii	Rroxscaffold_7G00181610 Rroxscaffold_7G00181620
rosa_rugosa	Rorug06G0186100 Rorug06G0186200
rosa_samantha	Rh6AG297500 Rh6BG303000 Rh6BG303100 Rh6CG306900 Rh6CG307000 Rh6CG311100 Rh6CG311200 Rh6DG294700 Rh6DG294800
rosa_wichuraiana	Rw6G025710 Rw6G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AccII	CGCG	1 cut(s)	716
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	2 cut(s)	500, 695
AflII	CTTAAG	1 cut(s)	779
AjnI	CCWGG	1 cut(s)	681
AleI	CACNNNNGTG	1 cut(s)	428
AluBI	AGCT	6 cut(s)	56, 299, 486, 513, 657, 770
AluI	AGCT	6 cut(s)	56, 299, 486, 513, 657, 770
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	4 cut(s)	143, 247, 726, 803
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	725
BciT130I	CCWGG	1 cut(s)	683
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	143, 247, 726, 803
BfaI	CTAG	7 cut(s)	95, 231, 257, 510, 623, 648, 756
BfmI	CTRYAG	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	779
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
BmcAI	AGTACT	1 cut(s)	695
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	15, 493
BmrFI	CCNGG	1 cut(s)	683
BmsI	GCATC	1 cut(s)	775
BmtI	GCTAGC	1 cut(s)	651
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	42, 756
BsaJI	CCNNGG	1 cut(s)	741
BsaWI	WCCGGW	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	1 cut(s)	790
BseMII	CTCAG	3 cut(s)	156, 410, 644
BseXI	GCAGC	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	716
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	374
BsmAI	GTCTC	4 cut(s)	143, 247, 726, 803
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	3, 187, 237, 775
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	155, 409, 645
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	2 cut(s)	15, 493
BspMAI	CTGCAG	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	651
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	2 cut(s)	476, 677
BspTI	CTTAAG	1 cut(s)	779
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	4 cut(s)	3, 187, 237, 775
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	3 cut(s)	348, 367, 556
Bst6I	CTCTTC	2 cut(s)	476, 677
BstAFI	CTTAAG	1 cut(s)	779
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	6 cut(s)	142, 323, 396, 533, 653, 726
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	1 cut(s)	716
BstKTI	GATC	4 cut(s)	6, 190, 240, 778
BstMAI	GTCTC	4 cut(s)	143, 247, 726, 803
BstMBI	GATC	4 cut(s)	3, 187, 237, 775
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 416, 483
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	2 cut(s)	138, 581
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	248
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	499, 694
CviAII	CATG	6 cut(s)	46, 135, 163, 473, 478, 578
CviQI	GTAC	2 cut(s)	499, 694
DdeI	CTNAG	6 cut(s)	142, 323, 396, 533, 653, 726
DpnI	GATC	4 cut(s)	5, 189, 239, 777
DpnII	GATC	4 cut(s)	3, 187, 237, 775
Eam1104I	CTCTTC	2 cut(s)	476, 677
EarI	CTCTTC	2 cut(s)	476, 677
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	681
FaeI	CATG	6 cut(s)	49, 138, 166, 476, 481, 581
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	45, 134, 162, 472, 477, 577
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	7 cut(s)	95, 231, 257, 510, 623, 648, 756
GluI	GCNGC	1 cut(s)	248
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	722
Hin1II	CATG	6 cut(s)	49, 138, 166, 476, 481, 581
HinfI	GANTC	1 cut(s)	722
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	559
Hpy188III	TCNNGA	3 cut(s)	289, 623, 773
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	3 cut(s)	348, 367, 556
HpyCH4V	TGCA	6 cut(s)	29, 250, 277, 440, 560, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 416, 483
HpyF3I	CTNAG	6 cut(s)	142, 323, 396, 533, 653, 726
Hsp92II	CATG	6 cut(s)	49, 138, 166, 476, 481, 581
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 187, 237, 775
LguI	GCTCTTC	2 cut(s)	476, 677
LpnPI	CCDG	6 cut(s)	144, 216, 396, 665, 668, 695
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	775
MaeI	CTAG	7 cut(s)	95, 231, 257, 510, 623, 648, 756
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	4 cut(s)	5, 189, 239, 777
MboI	GATC	4 cut(s)	3, 187, 237, 775
MboII	GAAGA	6 cut(s)	151, 235, 295, 493, 536, 664
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	4 cut(s)	18, 87, 378, 519
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	8 cut(s)	56, 138, 227, 381, 405, 505, 711, 799
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	2 cut(s)	290, 428
MspCI	CTTAAG	1 cut(s)	779
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	683
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	305, 416, 483
NdeII	GATC	4 cut(s)	3, 187, 237, 775
NheI	GCTAGC	1 cut(s)	647
NlaIII	CATG	6 cut(s)	49, 138, 166, 476, 481, 581
NlaIV	GGNNCC	2 cut(s)	15, 493
NspI	RCATGY	2 cut(s)	138, 581
OliI	CACNNNNGTG	1 cut(s)	428
PciSI	GCTCTTC	2 cut(s)	476, 677
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	1 cut(s)	249
Ple19I	CGATCG	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	2 cut(s)	15, 493
PspPI	GGNCC	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	775
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	500, 695
RsaNI	GTAC	2 cut(s)	499, 694
RseI	CAYNNNNRTG	2 cut(s)	290, 428
SapI	GCTCTTC	2 cut(s)	476, 677
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	4 cut(s)	3, 187, 237, 775
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	695
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	9 cut(s)	58, 301, 428, 488, 497, 515, 609, 659, 772
SfaNI	GCATC	1 cut(s)	775
SfcI	CTRYAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	290, 428
SmlI	CTYRAG	3 cut(s)	57, 771, 779
SmoI	CTYRAG	3 cut(s)	57, 771, 779
Sse9I	AATT	4 cut(s)	18, 87, 378, 519
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	7 cut(s)	95, 231, 257, 510, 623, 648, 756
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	3 cut(s)	348, 367, 556
TasI	AATT	4 cut(s)	18, 87, 378, 519
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	151, 373, 494
TspRI	CASTG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	779
VpaK11BI	GGWCC	1 cut(s)	110
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	2 cut(s)	138, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XspI	CTAG	7 cut(s)	95, 231, 257, 510, 623, 648, 756
ZrmI	AGTACT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.