Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016265

Physical Location & Seq

Genomic Coordinates Forward (+)

19417350 .. 19419933

Gene Structure 2584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGTTCGACCGTGATATCAATTCCAGAAGAGCTTTCTCCTCCTCTTCCCAGCATTAAGGAAGAGAAAGAGAGACCAAACAAGCTTTCGATTATTTTCTCTCATCTCGGAGAGCTACAAAAGAACAAGCAGAAAATGAGAAAGCTGATTCACAGCGTCAAGGTTGGGATTGCACTGGTTTTGGTTTCACTTCTCTATCTGCTCGACCCTCTCTATGAACAAGTCGGAGAAAATGCCATGTGGGCTATAATGACCGTGGTCGTCATCTTCGAGTTCTTTGCAGGTGCTACACTTAGCAAGGGCTTAAACCGAGGATTGGGAACCATCGTAGGAGGTGGACTTGGTTGCTCAGTTGCAACTTTAGCTCAAGAAATGACTGGCATGGGCAAAGCCAGCACCATTATCATTGGTTCTTCTGTATTTATCTTCGGTGCAGCTGGGACATACACTAGATTACAGCCGAGCATCAAGAAGAGATACGACTATGCAGCAATGATATTCATACTCACCTTCAATCTGGTGATCGTTTCGGGTTTACGTGCCGAGGAGGTGTTGGAATTGGCTCGTGATCGGCTTTCGACTATCGGAATGGGTTTCGCCGTCTGCATCTTCATAAGCTTGCTCGTCTTCCCCACATGGGCCAGTGATGAGCTTCATGACTCTATCTCCAGTAAATTCCAAGACCTTGCAAAAGCTATTGAAGAATGCCTTGAAGATTACTTCACATTAGATACTGAAAAAGACAACCAGCCTTGCCGACGGAGTTCCGGTTCCGGTAGTTGCAGATCGGTGTTGCACTCGAAGTCTAAAGATGAGACGCTGGCAAATTTTGCGAAATGGGAACCATGGCATGGGAAATTTGGTCTTTACTACCCATGGAACAAATACCTACAGGTTGGAGAGCAACTAAGAGACCTCGCTCCCATTGTCCTTTCCCTCAAAGCCTGTCTTCAATCTCCTAGACAGCCATCGTCAAGTGTGAGACAGTCGATCAAAGAGCCTAGTGAAGCTGTAGGGTTGTCTCTCGCATTGACCCTGCAAGAACTCGGAGAAAGCGTTATGAAGATGAGAAGGAGCCAACAAGAAGCTGTGATCATGCCCGAGTTGAAGTCAATGAGAGTAGAACTCAACTCCATCATTTCTTCTTCCAAGTTTGGACCCCTAGAGAATGTCGATGAGCTTGCGATTTCAAGCTTTGTCTTTCTGTTGATTGAGATGGTGGAAAAAGTTGAAGAACTGGCAAAGGAGGTTGAAGAACTTGGAGAACTCGCTGATTTTCGTACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

430

Amino Acids

47.5

Weight (kDa)

5.77

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	43 - 383	4.7e-117	Aluminium activated malate transporter
FUSC_2	PF13515	71 - 205	1.2e-10	Fusaric acid resistance protein-like
FUSC	PF04632	77 - 238	5.6e-10	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23710
malus_domestica	MD03G1266500.v1.1 MD11G1287000.v1.1 MD11G1287100.v1.1
prunus_persica	Prupe.8G242400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291181
rosa_laevigata	RLG00000012135
rosa_multiflora	Rmu_sc0013203.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176320
rosa_rugosa	Rorug06G0218300
rosa_samantha	Rh6AG328700 Rh6BG336200 Rh6CG342400 Rh6DG329600
rosa_wichuraiana	Rw6G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	851
AcsI	RAATTY	3 cut(s)	674, 826, 857
AfaI	GTAC	1 cut(s)	1282
AfiI	CCNNNNNNNGG	3 cut(s)	316, 637, 851
AgsI	TTSAA	8 cut(s)	514, 701, 713, 953, 1108, 1191, 1232, 1253
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AloI	GAACNNNNNNTCC	2 cut(s)	754, 786
Alw26I	GTCTC	5 cut(s)	67, 809, 906, 976, 1026
Ama87I	CYCGRG	1 cut(s)	1100
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	2 cut(s)	434, 488
ApoI	RAATTY	3 cut(s)	674, 826, 857
AspS9I	GGNCC	2 cut(s)	639, 1157
AsuHPI	GGTGA	2 cut(s)	499, 532
AvaI	CYCGRG	1 cut(s)	1100
AvaII	GGWCC	1 cut(s)	1157
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	2 cut(s)	619, 941
BbvI	GCAGC	2 cut(s)	446, 500
BccI	CCATC	4 cut(s)	332, 976, 1142, 1210
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 1163, 1197
BclI	TGATCA	1 cut(s)	1092
BcoDI	GTCTC	5 cut(s)	67, 809, 906, 976, 1026
BfaI	CTAG	4 cut(s)	450, 960, 1002, 1163
BfmI	CTRYAG	2 cut(s)	890, 1011
BfuAI	ACCTGC	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	2 cut(s)	435, 489
BlsI	GCNGC	2 cut(s)	436, 490
Bme18I	GGWCC	1 cut(s)	1157
BmeT110I	CYCGRG	1 cut(s)	1100
BmgT120I	GGNCC	2 cut(s)	639, 1157
BmiI	GGNNCC	5 cut(s)	322, 772, 843, 1076, 1159
BmsI	GCATC	2 cut(s)	474, 615
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	2 cut(s)	619, 941
BplI	GAGNNNNNCTC	2 cut(s)	1110, 1142
BpmI	CTGGAG	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	539
BsaI	GGTCTC	2 cut(s)	67, 906
BsaJI	CCNNGG	5 cut(s)	255, 310, 543, 845, 875
BsaWI	WCCGGW	2 cut(s)	767, 773
BsaXI	ACNNNNNCTCC	6 cut(s)	650, 680, 754, 784, 1041, 1071
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 637, 851
Bse1I	ACTGG	5 cut(s)	180, 382, 642, 669, 1242
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	255, 310, 543, 845, 875
BseLI	CCNNNNNNNGG	3 cut(s)	316, 637, 851
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	5 cut(s)	180, 382, 642, 669, 1242
BseRI	GAGGAG	3 cut(s)	30, 33, 560
BseXI	GCAGC	2 cut(s)	446, 500
BseYI	CCCAGC	2 cut(s)	50, 437
BsgI	GTGCAG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	1100
BsiSI	CCGG	2 cut(s)	768, 774
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	316, 637, 851
BsmAI	GTCTC	5 cut(s)	67, 809, 906, 976, 1026
BsmBI	CGTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	1 cut(s)	641
Bso31I	GGTCTC	2 cut(s)	67, 906
BsoBI	CYCGRG	1 cut(s)	1100
Bsp143I	GATC	5 cut(s)	522, 568, 785, 990, 1092
Bsp19I	CCATGG	2 cut(s)	845, 875
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	5 cut(s)	322, 772, 843, 1076, 1159
BspMI	ACCTGC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	24
BspTNI	GGTCTC	2 cut(s)	67, 906
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	5 cut(s)	180, 382, 642, 669, 1242
BssECI	CCNNGG	5 cut(s)	255, 310, 543, 845, 875
BssMI	GATC	5 cut(s)	522, 568, 785, 990, 1092
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	845, 875
Bst2BI	CACGAG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	13, 256, 987
Bst6I	CTCTTC	4 cut(s)	24, 51, 57, 467
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	4 cut(s)	394, 620, 822, 1182
BstDEI	CTNAG	3 cut(s)	293, 349, 908
BstDSI	CCRYGG	3 cut(s)	255, 845, 875
BstKTI	GATC	5 cut(s)	525, 571, 788, 993, 1095
BstMAI	GTCTC	5 cut(s)	67, 809, 906, 976, 1026
BstMBI	GATC	5 cut(s)	522, 568, 785, 990, 1092
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 362, 393, 830
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSFI	CTRYAG	2 cut(s)	890, 1011
BstV1I	GCAGC	2 cut(s)	446, 500
BstV2I	GAAGAC	2 cut(s)	619, 941
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	3 cut(s)	255, 845, 875
BtsIMutI	CAGTG	2 cut(s)	173, 649
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	4 cut(s)	394, 620, 822, 1182
CciI	TCATGA	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	639, 1157
CseI	GACGC	2 cut(s)	145, 826
Csp6I	GTAC	1 cut(s)	1281
CviAII	CATG	8 cut(s)	238, 382, 636, 656, 846, 851, 876, 1096
CviQI	GTAC	1 cut(s)	1281
DdeI	CTNAG	3 cut(s)	293, 349, 908
DpnI	GATC	5 cut(s)	524, 570, 787, 992, 1094
DpnII	GATC	5 cut(s)	522, 568, 785, 990, 1092
Eam1104I	CTCTTC	4 cut(s)	24, 51, 57, 467
EarI	CTCTTC	4 cut(s)	24, 51, 57, 467
Eco130I	CCWWGG	2 cut(s)	845, 875
Eco31I	GGTCTC	2 cut(s)	67, 906
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	1157
Eco88I	CYCGRG	1 cut(s)	1100
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	845, 875
ErhI	CCWWGG	2 cut(s)	845, 875
Esp3I	CGTCTC	1 cut(s)	809
FaeI	CATG	8 cut(s)	241, 385, 639, 659, 849, 854, 879, 1099
FalI	AAGNNNNNCTT	4 cut(s)	693, 725, 933, 965
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	8 cut(s)	237, 381, 635, 655, 845, 850, 875, 1095
FbaI	TGATCA	1 cut(s)	1092
Fnu4HI	GCNGC	2 cut(s)	435, 489
Fsp4HI	GCNGC	2 cut(s)	435, 489
FspBI	CTAG	4 cut(s)	450, 960, 1002, 1163
GluI	GCNGC	2 cut(s)	435, 489
GsaI	CCCAGC	2 cut(s)	54, 441
GsuI	CTGGAG	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	2 cut(s)	768, 774
HgaI	GACGC	2 cut(s)	145, 826
Hin1II	CATG	8 cut(s)	241, 385, 639, 659, 849, 854, 879, 1099
HindIII	AAGCTT	3 cut(s)	83, 616, 1192
HinfI	GANTC	2 cut(s)	148, 659
HpaII	CCGG	2 cut(s)	768, 774
HphI	GGTGA	2 cut(s)	499, 532
Hpy166II	GTNNAC	2 cut(s)	338, 536
Hpy188I	TCNGA	4 cut(s)	110, 227, 587, 1049
Hpy188III	TCNNGA	5 cut(s)	26, 368, 469, 566, 656
Hpy8I	GTNNAC	2 cut(s)	338, 536
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	2 cut(s)	520, 1065
HpyCH4III	ACNGT	3 cut(s)	13, 256, 987
HpyCH4IV	ACGT	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 362, 393, 830
HpyF3I	CTNAG	3 cut(s)	293, 349, 908
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	8 cut(s)	241, 385, 639, 659, 849, 854, 879, 1099
Ksp22I	TGATCA	1 cut(s)	1092
Kzo9I	GATC	5 cut(s)	522, 568, 785, 990, 1092
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	925, 1074
Lsp1109I	GCAGC	2 cut(s)	446, 500
LweI	GCATC	2 cut(s)	474, 615
MaeI	CTAG	4 cut(s)	450, 960, 1002, 1163
MaeII	ACGT	1 cut(s)	538
MalI	GATC	5 cut(s)	524, 570, 787, 992, 1094
MboI	GATC	5 cut(s)	522, 568, 785, 990, 1092
MluCI	AATT	5 cut(s)	21, 557, 674, 826, 857
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	3 cut(s)	205, 534, 877
MseI	TTAA	2 cut(s)	57, 305
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	2 cut(s)	768, 774
Mva1269I	GAATGC	1 cut(s)	710
MwoI	GCNNNNNNNGC	4 cut(s)	242, 362, 393, 830
NcoI	CCATGG	2 cut(s)	845, 875
NdeII	GATC	5 cut(s)	522, 568, 785, 990, 1092
NlaIII	CATG	8 cut(s)	241, 385, 639, 659, 849, 854, 879, 1099
NlaIV	GGNNCC	5 cut(s)	322, 772, 843, 1076, 1159
NmeAIII	GCCGAG	2 cut(s)	486, 568
PagI	TCATGA	1 cut(s)	655
PaqCI	CACCTGC	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 1053
PctI	GAATGC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	851
PkrI	GCNGC	2 cut(s)	436, 490
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
Ppu21I	YACGTR	1 cut(s)	539
PshAI	GACNNNNGTC	1 cut(s)	257
PspFI	CCCAGC	2 cut(s)	50, 437
PspN4I	GGNNCC	5 cut(s)	322, 772, 843, 1076, 1159
PspPI	GGNCC	2 cut(s)	639, 1157
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	1282
RsaNI	GTAC	1 cut(s)	1281
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	2 cut(s)	57, 305
SatI	GCNGC	2 cut(s)	435, 489
Sau3AI	GATC	5 cut(s)	522, 568, 785, 990, 1092
Sau96I	GGNCC	2 cut(s)	639, 1157
SchI	GAGTC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	474, 615
SfcI	CTRYAG	2 cut(s)	890, 1011
SinI	GGWCC	1 cut(s)	1157
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	5 cut(s)	21, 557, 674, 826, 857
SspMI	CTAG	4 cut(s)	450, 960, 1002, 1163
StyI	CCWWGG	2 cut(s)	845, 875
TaaI	ACNGT	3 cut(s)	13, 256, 987
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	8 cut(s)	8, 89, 204, 270, 578, 800, 989, 1173
TasI	AATT	5 cut(s)	21, 557, 674, 826, 857
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	57, 305
Tru9I	TTAA	2 cut(s)	57, 305
TscAI	CASTG	2 cut(s)	180, 649
TseI	GCWGC	2 cut(s)	434, 488
TspDTI	ATGAA	5 cut(s)	231, 490, 601, 644, 1076
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	2 cut(s)	180, 649
Van91I	CCANNNNNTGG	1 cut(s)	851
VpaK11BI	GGWCC	1 cut(s)	1157
XapI	RAATTY	3 cut(s)	674, 826, 857
XspI	CTAG	4 cut(s)	450, 960, 1002, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.