Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016265

Physical Location & Seq

Genomic Coordinates Forward (+)

40669699 .. 40672121

Gene Structure 2423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1287000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGTTCAACCGTGATAACTATTCCGGCAGATGGGGAGCTTGCTTGTCCCAAAAATATTCAAGACAAAGATGAGAGGCAGAAGTTTTCCATTTTTGGAATTATTTCCAATCGTACACTTAGAGTACTTGATCAGAAAAGCAAGCAAGATATGAGAAAGTTGCTTCACAGCATCAAGGTTGGAGTTGCCCTAGTATTGGTTTCACTTCTCTATCTTCTGGATCCTCTCTATGAGCAAGTTGGAGAGAATGCCATGTGGGCTATAATGACCGTCGTCGTCATTTTTGAGTTCTATGCAGGTGCTACACTTAGTAAGGGCTTAAACCGTGGATTCGGAACAATTTTAGGAGGTGTATTGGGGTGTTCAGCTGCAACTTTTGCCCAAGAAGTTTGTAGAATGGGCAAGGGCAACGCCGTGATTATCGGTTCTTCGGTGTTTGTCATCAGTGCATCTGCGACATATTTTAGATTAGTACCAAGTATCAAGAAAAGATATGACTATGGAGTCATGATCTTCATCCTGACCTTCAATCTAGTAATCGTATCGGGTTTACGTGCCGAAAAAGTGTTGGAATTAGCTCGTGATCGTCTTTCAACGATCGGAATGGGATTTGCCGTATGCATATTCATAAGCTTGCTAGTCTTCCCTACATGGGCTAGTGATGAACTTCATGACTCTACAGCTCATAAATTTCAACTCCTTGCAGACTCAATTGAAGGATGCTTGGAGAATTACTTCAGATTGGACAAGGAAATTATGAAGGATGACCAGCCTAGGTCCATTTCTAGTAGATGCAAGTCGGTGTTGCACTCCAGGTCCAAGGATGAGACACTGGCAAATTTTGCGAAGTGGGAACCATGGCACGGAAAGTTTGGTCTCAACTACCCCTGGACAAAATACCTACAAGTTGGAGAGCTTCTTCGAGAGCTAGCTACCATTGTCATTTCCCTCAAAGGTTGTCTTCAATCTCCTAGACAGCCGTCGTCGAGTCTGAGGCAGTCGATCGAAGAACCCAGTGAAGCTGTAGGGTTGACACTTGCATGGATCCTAAGAGAGCTTGGGGAGAGCCTTGTAAAGATGAGAAGATGCAACCGGGAGGCTGTGATAGTGCCCAAATTGAAGTCAATGAGACTAGAGATGAGCTCGATTGTTTCTACTTTCAAGTTTGGACCAATAGAGAATGTTGATGGACTTGCAATTGCAAGCTTTGTCTTCTTGTTGGCAGAGATGGTTGAAAAGGTGGAAGAATTGGGAAAGGAGATTGAAGAACTTGGAGAGCTTGCTGGTTTTCATACTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

434

Amino Acids

48.22

Weight (kDa)

8.31

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	48 - 371	7.7e-119	Aluminium activated malate transporter
FUSC_2	PF13515	76 - 210	3.6e-11	Fusaric acid resistance protein-like
FUSC	PF04632	82 - 242	4.5e-08	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23710
malus_domestica	MD03G1266500.v1.1 MD11G1287000.v1.1 MD11G1287100.v1.1
prunus_persica	Prupe.8G242400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291181
rosa_laevigata	RLG00000012135
rosa_multiflora	Rmu_sc0013203.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176320
rosa_rugosa	Rorug06G0218300
rosa_samantha	Rh6AG328700 Rh6BG336200 Rh6CG342400 Rh6DG329600
rosa_wichuraiana	Rw6G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	287
AclWI	GGATC	4 cut(s)	215, 228, 1039, 1052
AcsI	RAATTY	2 cut(s)	689, 838
AcuI	CTGAAG	1 cut(s)	721
AfaI	GTAC	3 cut(s)	115, 126, 474
AfiI	CCNNNNNNNGG	4 cut(s)	32, 196, 652, 863
AjnI	CCWGG	2 cut(s)	812, 887
Alw21I	GWGCWC	1 cut(s)	1145
Alw26I	GTCTC	3 cut(s)	821, 881, 1123
AlwI	GGATC	4 cut(s)	215, 228, 1039, 1052
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	689, 838
Asp700I	GAANNNNTTC	2 cut(s)	103, 734
AspA2I	CCTAGG	1 cut(s)	773
AspS9I	GGNCC	3 cut(s)	777, 816, 1169
AsuC2I	CCSGG	1 cut(s)	1094
AsuNHI	GCTAGC	1 cut(s)	928
AvaII	GGWCC	3 cut(s)	777, 816, 1169
AvrII	CCTAGG	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	1113
BamHI	GGATCC	2 cut(s)	220, 1044
BanII	GRGCYC	1 cut(s)	1145
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	3 cut(s)	634, 953, 1204
Bbv12I	GWGCWC	1 cut(s)	1145
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	3 cut(s)	26, 1181, 1222
BceAI	ACGGC	3 cut(s)	398, 599, 964
BciT130I	CCWGG	2 cut(s)	814, 889
BclI	TGATCA	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	1094
BcoDI	GTCTC	3 cut(s)	821, 881, 1123
BfaI	CTAG	9 cut(s)	191, 533, 638, 657, 774, 786, 929, 972, 1133
BfmI	CTRYAG	2 cut(s)	678, 1023
BfuAI	ACCTGC	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	369
BlnI	CCTAGG	1 cut(s)	773
BlsI	GCNGC	1 cut(s)	370
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	3 cut(s)	814, 889, 1094
Bme18I	GGWCC	3 cut(s)	777, 816, 1169
BmgT120I	GGNCC	3 cut(s)	777, 816, 1169
BmiI	GGNNCC	3 cut(s)	222, 855, 1046
BmrFI	CCNGG	3 cut(s)	814, 889, 1094
BmrI	ACTGGG	1 cut(s)	1008
BmsI	GCATC	5 cut(s)	180, 458, 710, 782, 1076
BmtI	GCTAGC	1 cut(s)	932
BmuI	ACTGGG	1 cut(s)	1008
BoxI	GACNNNNGTC	2 cut(s)	272, 979
BpiI	GAAGAC	3 cut(s)	634, 953, 1204
BplI	GAGNNNNNCTC	2 cut(s)	1127, 1159
BpmI	CTGGAG	1 cut(s)	796
BpuMI	CCSGG	1 cut(s)	1094
BsaAI	YACGTR	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	881
BsaJI	CCNNGG	5 cut(s)	325, 773, 819, 857, 887
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 196, 652, 863
Bse1I	ACTGG	2 cut(s)	837, 1014
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	814, 889
BseDI	CCNNGG	5 cut(s)	325, 773, 819, 857, 887
BseGI	GGATG	4 cut(s)	516, 725, 769, 829
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	4 cut(s)	32, 196, 652, 863
BseMII	CTCAG	1 cut(s)	983
BseNI	ACTGG	2 cut(s)	837, 1014
BseSI	GKGCMC	1 cut(s)	1113
BseXI	GCAGC	1 cut(s)	355
Bsh1285I	CGRYCG	2 cut(s)	600, 1005
BsiEI	CGRYCG	2 cut(s)	600, 1005
BsiHKAI	GWGCWC	1 cut(s)	1145
BsiSI	CCGG	2 cut(s)	26, 1093
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	4 cut(s)	32, 196, 652, 863
BsmAI	GTCTC	3 cut(s)	821, 881, 1123
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	881
Bsp1286I	GDGCHC	2 cut(s)	1113, 1145
Bsp143I	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
Bsp19I	CCATGG	1 cut(s)	857
BspCNI	CTCAG	1 cut(s)	984
BspHI	TCATGA	2 cut(s)	507, 670
BspLI	GGNNCC	3 cut(s)	222, 855, 1046
BspMI	ACCTGC	1 cut(s)	287
BspOI	GCTAGC	1 cut(s)	932
BspPI	GGATC	4 cut(s)	215, 228, 1039, 1052
BspTNI	GGTCTC	1 cut(s)	881
BsrI	ACTGG	2 cut(s)	837, 1014
BssECI	CCNNGG	5 cut(s)	325, 773, 819, 857, 887
BssMI	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	3 cut(s)	773, 819, 857
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	814, 889
Bst4CI	ACNGT	3 cut(s)	13, 271, 326
BstAPI	GCANNNNNTGC	2 cut(s)	377, 842
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	6 cut(s)	42, 143, 635, 930, 1204, 1281
BstDEI	CTNAG	4 cut(s)	119, 308, 992, 1049
BstDSI	CCRYGG	2 cut(s)	325, 857
BstF5I	GGATG	4 cut(s)	516, 725, 769, 829
BstKTI	GATC	7 cut(s)	133, 223, 513, 586, 600, 1005, 1047
BstMAI	GTCTC	3 cut(s)	821, 881, 1123
BstMBI	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
BstMCI	CGRYCG	2 cut(s)	600, 1005
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 377, 842
BstNI	CCWGG	2 cut(s)	814, 889
BstPAI	GACNNNNGTC	2 cut(s)	272, 979
BstSCI	CCNGG	3 cut(s)	812, 887, 1092
BstSFI	CTRYAG	2 cut(s)	678, 1023
BstSLI	GKGCMC	1 cut(s)	1113
BstV1I	GCAGC	1 cut(s)	355
BstV2I	GAAGAC	3 cut(s)	634, 953, 1204
BstX2I	RGATCY	2 cut(s)	220, 1044
BstYI	RGATCY	2 cut(s)	220, 1044
BtgI	CCRYGG	2 cut(s)	325, 857
BtsCI	GGATG	4 cut(s)	516, 725, 769, 829
BtsIMutI	CAGTG	3 cut(s)	451, 830, 1021
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	6 cut(s)	42, 143, 635, 930, 1204, 1281
CciI	TCATGA	2 cut(s)	507, 670
Cfr13I	GGNCC	3 cut(s)	777, 816, 1169
Csp6I	GTAC	3 cut(s)	114, 125, 473
CviAII	CATG	6 cut(s)	253, 508, 651, 671, 858, 1041
CviQI	GTAC	3 cut(s)	114, 125, 473
DdeI	CTNAG	4 cut(s)	119, 308, 992, 1049
DpnI	GATC	7 cut(s)	132, 222, 512, 585, 599, 1004, 1046
DpnII	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	1143
Eco130I	CCWWGG	3 cut(s)	773, 819, 857
Eco24I	GRGCYC	1 cut(s)	1145
Eco31I	GGTCTC	1 cut(s)	881
Eco47I	GGWCC	3 cut(s)	777, 816, 1169
Eco53kI	GAGCTC	1 cut(s)	1143
Eco57I	CTGAAG	1 cut(s)	721
EcoICRI	GAGCTC	1 cut(s)	1143
EcoRII	CCWGG	2 cut(s)	812, 887
EcoT14I	CCWWGG	3 cut(s)	773, 819, 857
EcoT22I	ATGCAT	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	1145
ErhI	CCWWGG	3 cut(s)	773, 819, 857
FaeI	CATG	6 cut(s)	256, 511, 654, 674, 861, 1044
FalI	AAGNNNNNCTT	2 cut(s)	945, 977
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	6 cut(s)	252, 507, 650, 670, 857, 1040
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	4 cut(s)	503, 732, 776, 836
FriOI	GRGCYC	1 cut(s)	1145
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	9 cut(s)	191, 533, 638, 657, 774, 786, 929, 972, 1133
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	796
HapII	CCGG	2 cut(s)	26, 1093
Hin1II	CATG	6 cut(s)	256, 511, 654, 674, 861, 1044
HincII	GTYRAC	1 cut(s)	1032
HindII	GTYRAC	1 cut(s)	1032
HindIII	AAGCTT	2 cut(s)	631, 1204
HinfI	GANTC	5 cut(s)	330, 504, 674, 707, 988
HpaII	CCGG	2 cut(s)	26, 1093
Hpy166II	GTNNAC	3 cut(s)	116, 551, 1032
Hpy188I	TCNGA	5 cut(s)	135, 335, 602, 740, 993
Hpy188III	TCNNGA	8 cut(s)	62, 218, 484, 508, 520, 581, 671, 923
Hpy8I	GTNNAC	3 cut(s)	116, 551, 1032
Hpy99I	CGWCG	4 cut(s)	275, 278, 985, 988
HpyAV	CCTTC	3 cut(s)	535, 710, 754
HpyCH4III	ACNGT	3 cut(s)	13, 271, 326
HpyCH4IV	ACGT	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 377, 842
HpyF3I	CTNAG	4 cut(s)	119, 308, 992, 1049
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	6 cut(s)	256, 511, 654, 674, 861, 1044
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	5 cut(s)	180, 458, 710, 782, 1076
MaeI	CTAG	9 cut(s)	191, 533, 638, 657, 774, 786, 929, 972, 1133
MaeII	ACGT	1 cut(s)	553
MalI	GATC	7 cut(s)	132, 222, 512, 585, 599, 1004, 1046
MboI	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
MfeI	CAATTG	2 cut(s)	711, 1197
MflI	RGATCY	2 cut(s)	220, 1044
MhlI	GDGCHC	2 cut(s)	1113, 1145
MlyI	GAGTC	4 cut(s)	513, 668, 701, 997
MmeI	TCCRAC	4 cut(s)	160, 220, 549, 889
MnlI	CCTC	6 cut(s)	69, 234, 341, 959, 987, 1090
Mph1103I	ATGCAT	1 cut(s)	623
MroXI	GAANNNNTTC	2 cut(s)	103, 734
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	1039
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	2 cut(s)	26, 1093
MspR9I	CCNGG	3 cut(s)	814, 889, 1094
MunI	CAATTG	2 cut(s)	711, 1197
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	814, 889
MwoI	GCNNNNNNNGC	3 cut(s)	257, 377, 842
NciI	CCSGG	1 cut(s)	1094
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
NheI	GCTAGC	1 cut(s)	928
NlaIII	CATG	6 cut(s)	256, 511, 654, 674, 861, 1044
NlaIV	GGNNCC	3 cut(s)	222, 855, 1046
NsiI	ATGCAT	1 cut(s)	623
PagI	TCATGA	2 cut(s)	507, 670
PaqCI	CACCTGC	1 cut(s)	287
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	103, 734
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	370
Ple19I	CGATCG	2 cut(s)	600, 1005
PleI	GAGTC	4 cut(s)	512, 668, 701, 996
PpsI	GAGTC	4 cut(s)	512, 668, 701, 996
Ppu21I	YACGTR	1 cut(s)	554
PshAI	GACNNNNGTC	2 cut(s)	272, 979
Psp124BI	GAGCTC	1 cut(s)	1145
Psp6I	CCWGG	2 cut(s)	812, 887
PspGI	CCWGG	2 cut(s)	812, 887
PspN4I	GGNNCC	3 cut(s)	222, 855, 1046
PspPI	GGNCC	3 cut(s)	777, 816, 1169
PsuI	RGATCY	2 cut(s)	220, 1044
PvuI	CGATCG	2 cut(s)	600, 1005
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	115, 126, 474
RsaNI	GTAC	3 cut(s)	114, 125, 473
RseI	CAYNNNNRTG	1 cut(s)	1039
SacI	GAGCTC	1 cut(s)	1145
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	7 cut(s)	130, 220, 510, 583, 597, 1002, 1044
Sau96I	GGNCC	3 cut(s)	777, 816, 1169
ScaI	AGTACT	1 cut(s)	126
SchI	GAGTC	4 cut(s)	513, 668, 701, 997
ScrFI	CCNGG	3 cut(s)	814, 889, 1094
SduI	GDGCHC	2 cut(s)	1113, 1145
SfaNI	GCATC	5 cut(s)	180, 458, 710, 782, 1076
SfcI	CTRYAG	2 cut(s)	678, 1023
SinI	GGWCC	3 cut(s)	777, 816, 1169
SmiMI	CAYNNNNRTG	1 cut(s)	1039
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	9 cut(s)	191, 533, 638, 657, 774, 786, 929, 972, 1133
SstI	GAGCTC	1 cut(s)	1145
StyD4I	CCNGG	3 cut(s)	812, 887, 1092
StyI	CCWWGG	3 cut(s)	773, 819, 857
TaaI	ACNGT	3 cut(s)	13, 271, 326
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	5 cut(s)	922, 986, 1001, 1005, 1145
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	3 cut(s)	451, 837, 1021
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	6 cut(s)	505, 616, 659, 678, 773, 1280
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	3 cut(s)	451, 837, 1021
VpaK11BI	GGWCC	3 cut(s)	777, 816, 1169
XapI	RAATTY	2 cut(s)	689, 838
XmaJI	CCTAGG	1 cut(s)	773
XmnI	GAANNNNTTC	2 cut(s)	103, 734
XspI	CTAG	9 cut(s)	191, 533, 638, 657, 774, 786, 929, 972, 1133
ZrmI	AGTACT	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.