Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016265

Physical Location & Seq

Genomic Coordinates Forward (+)

53068121 .. 53071576

Gene Structure 3456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG328700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGTTCGACCGTGATATCAATTCCAGATGGAGAGCTTTCTCTTCCTCTTCCCAGCATTAAGAAAGAGAAGGAGAGACCAAACAAGCTTTCAATTATTTTCTCCTATCTTGGAGAGCTACAAAAGAACAGGCAGAAAATGAGAAAGCTGATTCACAGCATCAAGGTTGGGATTGCACTGGTTTTGGTTTCACTACTCTATCTGCTCGACCCTCTCTATGAACAAGTCGGAGAAAATGCCATGTGGGCTATAATGACCGTCGTCGTCATCTTCGAGTTCTTTGCAGGTGCTACACTCAGCAAGGGCATAAACCGAGGATTGGGAACCATCTTAGGAGGTGGGCTTGGCTGCTCAGCTGCAACTTTAGCTCAAGAAGTTACTGGCATGGGCGAGGCCAGTACCATAATCATTGGTTCTTCTGTATTTGTCATCGGTGCAGCTGGGACATACACTAGATTACAGCCGAGCATCAAGAAGAGATACGACTATGCAGCAATGATATTCATACTCACCTTCAATCTGGTGGTTGTTTCGGGTTTACGTGCCGAGGAGGTGTTAAAATTGGCTCGTGAGCGGCTTTCAACCATCGGAATGGGTTTCGCCGTCTGCATCATCATAAGCTTGCTCGTCTTCCCCACATGGGCCAGTGATGAGCTTCATGACTCTTTATCCAGTAAATTCCAAGCCCTTGCAAAAGCTATTGAAGAATGCCTTGAAGATTACTTCAGATTAAATAGTGAAAAGGATAACCAGCCTGGCCAACCGAATTCCAGTTCCGGTAGTTGCAAATCGGTGTTGCACTCGAAGTCTAAAGATGAGTCGCTGGTATATACTATCTCCTCTTGTCACTGGTATATGCAAGAAATATTACACCGAGACAGTCTTTACTGGAAAATGTCAGAAACCTTCGAAGGATCATCTTTAATTATCAGTCATATCAAAAACAGTTTGGCCATTAAGCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

322

Amino Acids

35.41

Weight (kDa)

8.17

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	44 - 276	3e-88	Aluminium activated malate transporter
FUSC_2	PF13515	71 - 206	1e-10	Fusaric acid resistance protein-like
FUSC	PF04632	78 - 239	1.8e-08	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23710
malus_domestica	MD03G1266500.v1.1 MD11G1287000.v1.1 MD11G1287100.v1.1
prunus_persica	Prupe.8G242400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291181
rosa_laevigata	RLG00000012135
rosa_multiflora	Rmu_sc0013203.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176320
rosa_rugosa	Rorug06G0218300
rosa_samantha	Rh6AG328700 Rh6BG336200 Rh6CG342400 Rh6DG329600
rosa_wichuraiana	Rw6G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	574
AciI	CCGC	1 cut(s)	574
AclWI	GGATC	1 cut(s)	922
AcoI	YGGCCR	2 cut(s)	757, 951
AcsI	RAATTY	2 cut(s)	677, 766
AcuI	CTGAAG	1 cut(s)	709
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	2 cut(s)	319, 640
AgsI	TTSAA	5 cut(s)	93, 517, 582, 704, 716
AjnI	CCWGG	1 cut(s)	754
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
Alw26I	GTCTC	2 cut(s)	70, 870
AlwI	GGATC	1 cut(s)	922
AoxI	GGCC	4 cut(s)	393, 642, 757, 951
ApeKI	GCWGC	4 cut(s)	348, 356, 437, 491
ApoI	RAATTY	2 cut(s)	677, 766
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	1 cut(s)	502
AsuII	TTCGAA	1 cut(s)	909
BalI	TGGCCA	2 cut(s)	759, 953
BauI	CACGAG	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	622
BbvI	GCAGC	4 cut(s)	335, 343, 449, 503
BccI	CCATC	3 cut(s)	23, 335, 593
BceAI	ACGGC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	756
BcoDI	GTCTC	2 cut(s)	70, 870
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	5 cut(s)	349, 357, 438, 492, 575
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	5 cut(s)	350, 358, 439, 493, 576
Bme1390I	CCNGG	1 cut(s)	756
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	3 cut(s)	168, 477, 618
BoxI	GACNNNNGTC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	622
Bpu1102I	GCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	542
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	313, 546
BsaWI	WCCGGW	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 640
Bse1I	ACTGG	8 cut(s)	183, 385, 396, 645, 672, 771, 854, 893
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	313, 546
BseLI	CCNNNNNNNGG	2 cut(s)	319, 640
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	310, 366
BseNI	ACTGG	8 cut(s)	183, 385, 396, 645, 672, 771, 854, 893
BseRI	GAGGAG	2 cut(s)	563, 829
BseXI	GCAGC	4 cut(s)	335, 343, 449, 503
BseYI	CCCAGC	2 cut(s)	53, 440
BsgI	GTGCAG	1 cut(s)	456
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	4 cut(s)	395, 644, 759, 953
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	319, 640
BsmAI	GTCTC	2 cut(s)	70, 870
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	4 cut(s)	395, 644, 759, 953
Bso31I	GGTCTC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	909
Bsp143I	GATC	1 cut(s)	914
Bsp1720I	GCTNAGC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	4 cut(s)	395, 644, 759, 953
BspCNI	CTCAG	2 cut(s)	309, 365
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	922
BspT104I	TTCGAA	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	8 cut(s)	183, 385, 396, 645, 672, 771, 854, 893
BssECI	CCNNGG	2 cut(s)	313, 546
BssMI	GATC	1 cut(s)	914
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	4 cut(s)	13, 259, 881, 947
Bst6I	CTCTTC	3 cut(s)	48, 54, 470
BstBAI	YACGTR	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	909
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	3 cut(s)	296, 331, 352
BstKTI	GATC	1 cut(s)	917
BstMAI	GTCTC	2 cut(s)	70, 870
BstMBI	GATC	1 cut(s)	914
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 365
BstNI	CCWGG	1 cut(s)	756
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	754
BstV1I	GCAGC	4 cut(s)	335, 343, 449, 503
BstV2I	GAAGAC	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	592
BsuRI	GGCC	4 cut(s)	395, 644, 759, 953
BtsIMutI	CAGTG	3 cut(s)	176, 652, 847
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	623
CciI	TCATGA	1 cut(s)	658
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	4 cut(s)	241, 385, 639, 659
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	3 cut(s)	296, 331, 352
DpnI	GATC	1 cut(s)	916
DpnII	GATC	1 cut(s)	914
EaeI	YGGCCR	2 cut(s)	757, 951
Eam1104I	CTCTTC	3 cut(s)	48, 54, 470
EarI	CTCTTC	3 cut(s)	48, 54, 470
Eco31I	GGTCTC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	18
FaeI	CATG	4 cut(s)	244, 388, 642, 662
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	4 cut(s)	240, 384, 638, 658
Fnu4HI	GCNGC	5 cut(s)	349, 357, 438, 492, 575
Fsp4HI	GCNGC	5 cut(s)	349, 357, 438, 492, 575
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	5 cut(s)	349, 357, 438, 492, 575
GsaI	CCCAGC	2 cut(s)	57, 444
HaeIII	GGCC	4 cut(s)	395, 644, 759, 953
HapII	CCGG	1 cut(s)	777
Hin1II	CATG	4 cut(s)	244, 388, 642, 662
HindIII	AAGCTT	2 cut(s)	86, 619
HinfI	GANTC	3 cut(s)	151, 662, 818
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	230, 590, 728, 901
Hpy188III	TCNNGA	5 cut(s)	26, 371, 472, 569, 659
Hpy8I	GTNNAC	1 cut(s)	539
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	4 cut(s)	64, 523, 905, 916
HpyCH4III	ACNGT	4 cut(s)	13, 259, 881, 947
HpyCH4IV	ACGT	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 365
HpyF3I	CTNAG	3 cut(s)	296, 331, 352
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	4 cut(s)	244, 388, 642, 662
Kzo9I	GATC	1 cut(s)	914
Lsp1109I	GCAGC	4 cut(s)	335, 343, 449, 503
LweI	GCATC	3 cut(s)	168, 477, 618
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	376, 845
MalI	GATC	1 cut(s)	916
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	1 cut(s)	914
MboII	GAAGA	8 cut(s)	35, 41, 262, 408, 487, 622, 716, 728
MlsI	TGGCCA	2 cut(s)	759, 953
MluCI	AATT	6 cut(s)	21, 93, 560, 677, 766, 924
MluNI	TGGCCA	2 cut(s)	759, 953
MlyI	GAGTC	2 cut(s)	656, 827
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	8 cut(s)	57, 222, 308, 329, 385, 541, 544, 850
Mox20I	TGGCCA	2 cut(s)	759, 953
MscI	TGGCCA	2 cut(s)	759, 953
MseI	TTAA	6 cut(s)	60, 557, 731, 923, 957, 967
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	2 cut(s)	759, 953
MspA1I	CMGCKG	2 cut(s)	356, 440
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	245, 365
NdeII	GATC	1 cut(s)	914
NlaIII	CATG	4 cut(s)	244, 388, 642, 662
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	2 cut(s)	489, 571
NmuCI	GTSAC	1 cut(s)	845
NspV	TTCGAA	1 cut(s)	909
PagI	TCATGA	1 cut(s)	658
PaqCI	CACCTGC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	350, 358, 439, 493, 576
PleI	GAGTC	2 cut(s)	656, 826
PpsI	GAGTC	2 cut(s)	656, 826
Ppu21I	YACGTR	1 cut(s)	542
PshAI	GACNNNNGTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	754
PspFI	CCCAGC	2 cut(s)	53, 440
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	642
PvuII	CAGCTG	2 cut(s)	356, 440
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	6 cut(s)	60, 557, 731, 923, 957, 967
SatI	GCNGC	5 cut(s)	349, 357, 438, 492, 575
Sau3AI	GATC	1 cut(s)	914
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	2 cut(s)	656, 827
ScrFI	CCNGG	1 cut(s)	756
SfaNI	GCATC	3 cut(s)	168, 477, 618
SfuI	TTCGAA	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	6 cut(s)	21, 93, 560, 677, 766, 924
SsiI	CCGC	1 cut(s)	574
SspI	AATATT	1 cut(s)	867
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	754
TaaI	ACNGT	4 cut(s)	13, 259, 881, 947
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	5 cut(s)	8, 207, 273, 803, 909
TasI	AATT	6 cut(s)	21, 93, 560, 677, 766, 924
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	6 cut(s)	60, 557, 731, 923, 957, 967
Tru9I	TTAA	6 cut(s)	60, 557, 731, 923, 957, 967
TscAI	CASTG	3 cut(s)	183, 652, 854
TseFI	GTSAC	1 cut(s)	845
TseI	GCWGC	4 cut(s)	348, 356, 437, 491
Tsp45I	GTSAC	1 cut(s)	845
TspDTI	ATGAA	3 cut(s)	234, 493, 647
TspRI	CASTG	3 cut(s)	183, 652, 854
XapI	RAATTY	2 cut(s)	677, 766
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.