Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016265

Physical Location & Seq

Genomic Coordinates Forward (+)

40690421 .. 40692813

Gene Structure 2393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1287100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGTTCGACCGTGATAACTATTCCGGCAGATGTGGAGCTTGCTCTTCCCAAAAATATTCAAAACAAAGATGAGAGGCAGAAATTTTCTATTTTTGGAATTATTTCCAATCTTACACTTAGAGTACTTGATCAGAAAACCAAGCAAGATATGAGAAAGCTGCTTCACAGCATCAAGGTTGGAGTTGCCCTAGTTTTGGTTTCACTTCTCTATCTTCTCGACCCTCTCTATGAACAAGTTGGAGAGAATGCCATGTGGGCTATCATGACCGTCGTCGTCATTTTCGAGTTCTATGCAGGTGCTACACTTTGTAAGGGCTTAAACCGTGGAATGGGTACAATTTTAGGAGGTGTATTGGGGTGTTCAGCTGCAACTTTTGCTCAAGAAGTTGGTGGAATGGGCAAGGGCAACGCGGTAATGATCGGTTCTTGGGTGTTTGTCATGGGTGCAACTGCAACATATTTTAGATTAGTGCCTAGCATCAAGAAAAGATATGACTATGGAGTCCTGATCTTTATCCTAACCTTCAACCTAGTAATTGTATCGGGTTTACGTGCCGATAAAGTGTTGGAAATAGCTCGTGATCGTCTTTCAACAATTGCAATGGGATTTGCAGTATGCATATTCGTAAGCTTGCTAGTCTTCCCAACATGGACTAGTGATGAACTTCATGACTCTACAGCTCATAAATTTCAACTCCTTGCTGACTCAATTGAAGGATGCTTGGAAAATTACTTCAGATTGGACAAGGAAAATATGAAGGATGATTCCATTTCTAGTAGTTGCAAGTCGGTGTTGAACTCCAAGTCAAAGGATGAGACACTGGCAAATTTTGCGAAATGGGAACCATGGCATGGAAAGTTTGGTCTCAACTACCCATGGACAAAATACCTACAAGTTGGAGAGCTTCTTCGAGACCTAGCCACCATTGTCATTTCCCTCAAAGGTTGTCTTCAATCTCCTAGACAGCCGTGGTCGGGTCTGATGCAGTCGATCGAAGAGCCTAGTGAAGCTGTAGGATTGACACTTGCATGGAGCCTAAGAGAGCTTGGAGAGAGCCTTGTGAAGATGAGAAGATGCAACAAGGAGGCTGTGATAGTTCCCAAATTGAACTCAATGAGACTAGAGCTGAGCTCGATTGTTTCTCCTTCCAAGTTTGGACCGATAGAGAATGCTGATGGACTTGCAATTGCAAGCTTTGTCTTCTTGTTGACAGAGATGATCGAAAAGTTGGAAGAATTGGCAAAGGTGATTGAAGAACTTGGAGAGCTTGCTGGTTTTCATACTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

431

Amino Acids

47.61

Weight (kDa)

6.56

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	48 - 369	8.4e-119	Aluminium activated malate transporter
FUSC_2	PF13515	76 - 210	2.2e-10	Fusaric acid resistance protein-like
FUSC	PF04632	82 - 242	1e-07	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23710
malus_domestica	MD03G1266500.v1.1 MD11G1287000.v1.1 MD11G1287100.v1.1
prunus_persica	Prupe.8G242400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291181
rosa_laevigata	RLG00000012135
rosa_multiflora	Rmu_sc0013203.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176320
rosa_rugosa	Rorug06G0218300
rosa_samantha	Rh6AG328700 Rh6BG336200 Rh6CG342400 Rh6DG329600
rosa_wichuraiana	Rw6G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccII	CGCG	1 cut(s)	413
AciI	CCGC	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	83, 689, 829
AcuI	CTGAAG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	126, 337
AfiI	CCNNNNNNNGG	4 cut(s)	196, 331, 854, 977
AgsI	TTSAA	9 cut(s)	62, 529, 594, 695, 716, 799, 956, 1111, 1256
AhlI	ACTAGT	1 cut(s)	656
Alw21I	GWGCWC	1 cut(s)	1136
Alw26I	GTCTC	4 cut(s)	812, 872, 909, 1114
ApeKI	GCWGC	2 cut(s)	160, 368
ApoI	RAATTY	3 cut(s)	83, 689, 829
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	1160
AsuHPI	GGTGA	1 cut(s)	1261
AvaII	GGWCC	1 cut(s)	1160
BanII	GRGCYC	1 cut(s)	1136
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	3 cut(s)	634, 944, 1195
Bbv12I	GWGCWC	1 cut(s)	1136
BbvI	GCAGC	2 cut(s)	147, 355
BccI	CCATC	1 cut(s)	1172
BceAI	ACGGC	1 cut(s)	955
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	4 cut(s)	812, 872, 909, 1114
BcuI	ACTAGT	1 cut(s)	656
BfmI	CTRYAG	2 cut(s)	678, 1014
BfuAI	ACCTGC	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	161, 369
BlpI	GCTNAGC	1 cut(s)	1130
BlsI	GCNGC	2 cut(s)	162, 370
BmcAI	AGTACT	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	1160
BmgT120I	GGNCC	1 cut(s)	1160
BmiI	GGNNCC	2 cut(s)	846, 1037
BmsI	GCATC	5 cut(s)	180, 489, 710, 975, 1067
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	3 cut(s)	634, 944, 1195
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
Bpu1102I	GCTNAGC	1 cut(s)	1130
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	515
BsaI	GGTCTC	2 cut(s)	872, 909
BsaJI	CCNNGG	4 cut(s)	325, 848, 878, 971
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 331, 854, 977
Bse1I	ACTGG	1 cut(s)	828
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	515
BseDI	CCNNGG	4 cut(s)	325, 848, 878, 971
BseGI	GGATG	3 cut(s)	725, 769, 820
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	4 cut(s)	196, 331, 854, 977
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	1121
BseNI	ACTGG	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	147, 355
Bsh1236I	CGCG	1 cut(s)	413
Bsh1285I	CGRYCG	2 cut(s)	12, 996
BsiEI	CGRYCG	2 cut(s)	12, 996
BsiHKAI	GWGCWC	1 cut(s)	1136
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	196, 331, 854, 977
BsmAI	GTCTC	4 cut(s)	812, 872, 909, 1114
BsmI	GAATGC	2 cut(s)	253, 1177
Bso31I	GGTCTC	2 cut(s)	872, 909
Bsp1286I	GDGCHC	1 cut(s)	1136
Bsp143I	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
Bsp1720I	GCTNAGC	1 cut(s)	1130
Bsp19I	CCATGG	2 cut(s)	848, 878
BspACI	CCGC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	1122
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	2 cut(s)	264, 670
BspLI	GGNNCC	2 cut(s)	846, 1037
BspMI	ACCTGC	1 cut(s)	287
BspQI	GCTCTTC	2 cut(s)	51, 993
BspTNI	GGTCTC	2 cut(s)	872, 909
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	1 cut(s)	828
BssECI	CCNNGG	4 cut(s)	325, 848, 878, 971
BssMI	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	2 cut(s)	848, 878
Bst2BI	CACGAG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	13, 271, 326
Bst6I	CTCTTC	2 cut(s)	51, 993
BstAPI	GCANNNNNTGC	2 cut(s)	377, 833
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	4 cut(s)	42, 635, 1195, 1272
BstDEI	CTNAG	3 cut(s)	119, 1040, 1130
BstDSI	CCRYGG	4 cut(s)	325, 848, 878, 971
BstF5I	GGATG	3 cut(s)	725, 769, 820
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	6 cut(s)	133, 423, 513, 586, 996, 1224
BstMAI	GTCTC	4 cut(s)	812, 872, 909, 1114
BstMBI	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
BstMCI	CGRYCG	2 cut(s)	12, 996
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 377, 833
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	678, 1014
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	147, 355
BstV2I	GAAGAC	3 cut(s)	634, 944, 1195
BtgI	CCRYGG	4 cut(s)	325, 848, 878, 971
BtsCI	GGATG	3 cut(s)	725, 769, 820
BtsIMutI	CAGTG	1 cut(s)	821
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	4 cut(s)	42, 635, 1195, 1272
CciI	TCATGA	2 cut(s)	264, 670
Cfr13I	GGNCC	1 cut(s)	1160
Csp6I	GTAC	2 cut(s)	125, 336
CviAII	CATG	9 cut(s)	253, 265, 442, 651, 671, 849, 854, 879, 1032
CviQI	GTAC	2 cut(s)	125, 336
DdeI	CTNAG	3 cut(s)	119, 1040, 1130
DpnI	GATC	6 cut(s)	132, 422, 512, 585, 995, 1223
DpnII	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
Eam1104I	CTCTTC	2 cut(s)	51, 993
EarI	CTCTTC	2 cut(s)	51, 993
Ecl136II	GAGCTC	1 cut(s)	1134
Eco130I	CCWWGG	2 cut(s)	848, 878
Eco24I	GRGCYC	1 cut(s)	1136
Eco31I	GGTCTC	2 cut(s)	872, 909
Eco47I	GGWCC	1 cut(s)	1160
Eco53kI	GAGCTC	1 cut(s)	1134
Eco57I	CTGAAG	1 cut(s)	721
EcoICRI	GAGCTC	1 cut(s)	1134
EcoT14I	CCWWGG	2 cut(s)	848, 878
EcoT22I	ATGCAT	1 cut(s)	623
EcoT38I	GRGCYC	1 cut(s)	1136
ErhI	CCWWGG	2 cut(s)	848, 878
FaeI	CATG	9 cut(s)	256, 268, 445, 654, 674, 852, 857, 882, 1035
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FatI	CATG	9 cut(s)	252, 264, 441, 650, 670, 848, 853, 878, 1031
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	161, 369
FokI	GGATG	3 cut(s)	732, 776, 827
FriOI	GRGCYC	1 cut(s)	1136
Fsp4HI	GCNGC	2 cut(s)	161, 369
GluI	GCNGC	2 cut(s)	161, 369
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	9 cut(s)	256, 268, 445, 654, 674, 852, 857, 882, 1035
HincII	GTYRAC	1 cut(s)	1212
HindII	GTYRAC	1 cut(s)	1212
HindIII	AAGCTT	2 cut(s)	631, 1195
HinfI	GANTC	4 cut(s)	504, 674, 707, 767
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	1261
Hpy166II	GTNNAC	2 cut(s)	551, 1212
Hpy188I	TCNGA	3 cut(s)	135, 740, 984
Hpy188III	TCNNGA	8 cut(s)	218, 265, 383, 484, 508, 581, 671, 914
Hpy8I	GTNNAC	2 cut(s)	551, 1212
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	4 cut(s)	535, 710, 754, 1158
HpyCH4III	ACNGT	3 cut(s)	13, 271, 326
HpyCH4IV	ACGT	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 377, 833
HpyF3I	CTNAG	3 cut(s)	119, 1040, 1130
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	9 cut(s)	256, 268, 445, 654, 674, 852, 857, 882, 1035
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
LguI	GCTCTTC	2 cut(s)	51, 993
LmnI	GCTCC	2 cut(s)	37, 1035
LpnPI	CCDG	5 cut(s)	39, 282, 521, 809, 1260
Lsp1109I	GCAGC	2 cut(s)	147, 355
LweI	GCATC	5 cut(s)	180, 489, 710, 975, 1067
MaeII	ACGT	1 cut(s)	553
MalI	GATC	6 cut(s)	132, 422, 512, 585, 995, 1223
MboI	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
MfeI	CAATTG	3 cut(s)	597, 711, 1188
MhlI	GDGCHC	1 cut(s)	1136
MlyI	GAGTC	3 cut(s)	513, 668, 701
MmeI	TCCRAC	5 cut(s)	160, 220, 549, 880, 1212
MnlI	CCTC	5 cut(s)	69, 234, 341, 950, 1081
Mph1103I	ATGCAT	1 cut(s)	623
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	1030
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	3 cut(s)	597, 711, 1188
Mva1269I	GAATGC	2 cut(s)	253, 1177
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	257, 377, 833
NcoI	CCATGG	2 cut(s)	848, 878
NdeII	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
NlaIII	CATG	9 cut(s)	256, 268, 445, 654, 674, 852, 857, 882, 1035
NlaIV	GGNNCC	2 cut(s)	846, 1037
NsiI	ATGCAT	1 cut(s)	623
PagI	TCATGA	2 cut(s)	264, 670
PaqCI	CACCTGC	1 cut(s)	287
PciSI	GCTCTTC	2 cut(s)	51, 993
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	2 cut(s)	253, 1177
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	767
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	2 cut(s)	162, 370
Ple19I	CGATCG	1 cut(s)	996
PleI	GAGTC	3 cut(s)	512, 668, 701
PpsI	GAGTC	3 cut(s)	512, 668, 701
Ppu21I	YACGTR	1 cut(s)	554
PshAI	GACNNNNGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	1136
PspN4I	GGNNCC	2 cut(s)	846, 1037
PspPI	GGNCC	1 cut(s)	1160
PvuI	CGATCG	1 cut(s)	996
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	126, 337
RsaNI	GTAC	2 cut(s)	125, 336
RseI	CAYNNNNRTG	1 cut(s)	1030
SacI	GAGCTC	1 cut(s)	1136
SapI	GCTCTTC	2 cut(s)	51, 993
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	2 cut(s)	161, 369
Sau3AI	GATC	6 cut(s)	130, 420, 510, 583, 993, 1221
Sau96I	GGNCC	1 cut(s)	1160
ScaI	AGTACT	1 cut(s)	126
SchI	GAGTC	3 cut(s)	513, 668, 701
SduI	GDGCHC	1 cut(s)	1136
SfaNI	GCATC	5 cut(s)	180, 489, 710, 975, 1067
SfcI	CTRYAG	2 cut(s)	678, 1014
SinI	GGWCC	1 cut(s)	1160
SmiMI	CAYNNNNRTG	1 cut(s)	1030
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	656
SsiI	CCGC	1 cut(s)	413
SspI	AATATT	1 cut(s)	58
SstI	GAGCTC	1 cut(s)	1136
StyI	CCWWGG	2 cut(s)	848, 878
TaaI	ACNGT	3 cut(s)	13, 271, 326
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	8 cut(s)	8, 219, 285, 913, 992, 996, 1136, 1224
TaqII	GACCGA	1 cut(s)	1177
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	1 cut(s)	828
TseI	GCWGC	2 cut(s)	160, 368
TspDTI	ATGAA	5 cut(s)	246, 659, 678, 773, 1271
TspRI	CASTG	1 cut(s)	828
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	1160
XapI	RAATTY	3 cut(s)	83, 689, 829
XmnI	GAANNNNTTC	1 cut(s)	103
ZrmI	AGTACT	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.