Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016265

Physical Location & Seq

Genomic Coordinates Forward (+)

21190743 .. 21193223

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G242400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGTTCGATCGTGATATCTGTTCCAGCAGATGTTGAGCTTGCTCTTCCTAAACATATTGGAGAGAAAGAGGAGCCCAAACTTTCTATGTTTGCCACCATTGTTTCCAATCTTAGACAACTTCAGAAAAGGCAGCAGGATATGAGAAAGCTGCTTCACAGCGTCAAGGTTGCAACTGCACTGGTTTTGGTCTCACTTCTCTATCTTCTTGACCCTCTCTATGAGCAAGTTGGAGATAATGCCATGTGGGCTATAATGACGGTCGTCGTCATCTTTGAGTTCTACGCAGGTGCTACACTTAGTAAGGGTTTAAATCGTGGATTGGGAACAATATTAGGAGGTGTTATGGGGTTCTCAGCTGCAACTTTTGCTCAAGAAGTTGGTGGAATGGGCAAGGGCAACGCCATAATTGTTGGTTTTTCTGTGTTTATCTTCGGCGGAGCTGCAACATATTCTAGATTGGTCCCAAGGATTAAGAAAAGATATGACTATGGAGCCATGATCTTCATCCTCACCTTCAATCTGGTGGTTGTGTCTGGTTTACGTGCCGAAAATGTGTTGGAATTAGCTCGCGAGCGCCTTTCAACCATCGGCATGGGATTTGCCGTTTGCATCTTCATAAGCTTGCTGGTGTTCCCCACATGGGCCAGTGATGAGCTTCACCACTCTACAGCTCATAAGTTCCAAGACCTTGCAGACTCAATTGAAGGATTCTTGGAGAGTTATTTTAGATTGGACAAAGAAAATTTGAAGGATGACCAGCCTAGTTCCATTTCCAGAAGTTGCAAATCGGTGTTGCACTCAAAGTCAAAGGATGAGTCTCTGGCGAATTTTGCGAAATGGGAACCATGGCATGGAAAATTTGGTTTCTACTACCCATGGAATAAGTACCTACAAGTTGGAGAGCTTCTTAGAGAGCTAGCTACCATGGTCCTTTCCCTCAAAGGCTCTCTTCAATCTCCTAGACAGCCCTCGTCGAGCCTGAGGCAGTCAGTGAAAGAGCCAAGTGAAGCTGTGGGGTTGTCACTTGCATGGAGCCTGAGAGAGCTTGGAGAGAGCCTAATGAAGATGAGAAGGTGCCCTCAAGAGAATGTGATATTGCCCAAGTTGAAGTCAATGAGACTGGAGCTGAGCTCCATGGTGTCTCCAGTTTCCAACTTTGGACCTCTAGAGAATGTTGAAGGACTTGCAATTGCAACCTTTGTGTTCTTGTTGACAGAGATGCTTGAGAAAGTGGAAGAATTGGCAAAGGAGGTTGAAGAAATTGGAGAGCTTGCTGGCTTTCATTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

432

Amino Acids

47.83

Weight (kDa)

7.1

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23710
malus_domestica	MD03G1266500.v1.1 MD11G1287000.v1.1 MD11G1287100.v1.1
prunus_persica	Prupe.8G242400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291181
rosa_laevigata	RLG00000012135
rosa_multiflora	Rmu_sc0013203.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176320
rosa_rugosa	Rorug06G0218300
rosa_samantha	Rh6AG328700 Rh6BG336200 Rh6CG342400 Rh6DG329600
rosa_wichuraiana	Rw6G028590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	1077
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccII	CGCG	1 cut(s)	573
AciI	CCGC	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	745, 829, 860
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	2 cut(s)	643, 854
AgsI	TTSAA	8 cut(s)	520, 585, 707, 751, 956, 1111, 1181, 1259
Alw21I	GWGCWC	1 cut(s)	1136
Alw26I	GTCTC	4 cut(s)	196, 825, 1114, 1149
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	4 cut(s)	133, 151, 359, 443
ApoI	RAATTY	3 cut(s)	745, 829, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	4 cut(s)	463, 645, 931, 1163
AsuHPI	GGTGA	2 cut(s)	505, 653
AsuNHI	GCTAGC	1 cut(s)	919
AvaII	GGWCC	3 cut(s)	463, 931, 1163
AxyI	CCTNAGG	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	1082
BanI	GGYRCC	1 cut(s)	1077
BanII	GRGCYC	2 cut(s)	78, 1136
Bbv12I	GWGCWC	1 cut(s)	1136
BbvI	GCAGC	4 cut(s)	138, 145, 346, 430
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	1 cut(s)	590
BcoDI	GTCTC	4 cut(s)	196, 825, 1114, 1149
BfaI	CTAG	5 cut(s)	456, 765, 920, 963, 1169
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	580
BfuAI	ACCTGC	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	134, 152, 360, 444
BlpI	GCTNAGC	1 cut(s)	1130
BlsI	GCNGC	4 cut(s)	135, 153, 361, 445
Bme18I	GGWCC	3 cut(s)	463, 931, 1163
BmgT120I	GGNCC	4 cut(s)	463, 645, 931, 1163
BmiI	GGNNCC	6 cut(s)	75, 465, 496, 846, 1037, 1079
BmsI	GCATC	2 cut(s)	621, 1212
BmtI	GCTAGC	1 cut(s)	923
BoxI	GACNNNNGTC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
BpmI	CTGGAG	2 cut(s)	1131, 1145
Bpu1102I	GCTNAGC	1 cut(s)	1130
BpuEI	CTTGAG	3 cut(s)	357, 1068, 1247
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	5 cut(s)	467, 848, 878, 927, 1137
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 854
Bse1I	ACTGG	4 cut(s)	186, 648, 1128, 1148
Bse21I	CCTNAGG	1 cut(s)	983
Bse8I	GATNNNNATC	1 cut(s)	506
BseDI	CCNNGG	5 cut(s)	467, 848, 878, 927, 1137
BseGI	GGATG	3 cut(s)	507, 760, 820
BseJI	GATNNNNATC	1 cut(s)	506
BseLI	CCNNNNNNNGG	2 cut(s)	643, 854
BseMII	CTCAG	4 cut(s)	369, 974, 1031, 1121
BseNI	ACTGG	4 cut(s)	186, 648, 1128, 1148
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	1082
BseXI	GCAGC	4 cut(s)	138, 145, 346, 430
BsgI	GTGCAG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	573
Bsh1285I	CGRYCG	2 cut(s)	12, 264
BshFI	GGCC	1 cut(s)	647
BshNI	GGYRCC	1 cut(s)	1077
BsiEI	CGRYCG	2 cut(s)	12, 264
BsiHKAI	GWGCWC	1 cut(s)	1136
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	643, 854
BsmAI	GTCTC	4 cut(s)	196, 825, 1114, 1149
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	647
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	78, 1082, 1136
Bsp143I	GATC	2 cut(s)	9, 501
Bsp1720I	GCTNAGC	1 cut(s)	1130
Bsp19I	CCATGG	4 cut(s)	848, 878, 927, 1137
Bsp68I	TCGCGA	1 cut(s)	573
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	4 cut(s)	368, 975, 1032, 1122
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	6 cut(s)	75, 465, 496, 846, 1037, 1079
BspMI	ACCTGC	1 cut(s)	278
BspOI	GCTAGC	1 cut(s)	923
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	1077
BspTNI	GGTCTC	1 cut(s)	196
BsrI	ACTGG	4 cut(s)	186, 648, 1128, 1148
BssECI	CCNNGG	5 cut(s)	467, 848, 878, 927, 1137
BssMI	GATC	2 cut(s)	9, 501
BssT1I	CCWWGG	5 cut(s)	467, 848, 878, 927, 1137
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	51, 957
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	7 cut(s)	42, 571, 575, 626, 921, 1275, 1279
BstDEI	CTNAG	7 cut(s)	113, 299, 355, 911, 983, 1040, 1130
BstDSI	CCRYGG	4 cut(s)	848, 878, 927, 1137
BstF5I	GGATG	3 cut(s)	507, 760, 820
BstFNI	CGCG	1 cut(s)	573
BstH2I	RGCGCY	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	2 cut(s)	12, 504
BstMAI	GTCTC	4 cut(s)	196, 825, 1114, 1149
BstMBI	GATC	2 cut(s)	9, 501
BstMCI	CGRYCG	2 cut(s)	12, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 368, 833
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	1082
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	138, 145, 346, 430
BstXI	CCANNNNNNTGG	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	983
BsuRI	GGCC	1 cut(s)	647
BtgI	CCRYGG	4 cut(s)	848, 878, 927, 1137
BtsCI	GGATG	3 cut(s)	507, 760, 820
BtsIMutI	CAGTG	3 cut(s)	179, 655, 999
BtuMI	TCGCGA	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	7 cut(s)	42, 571, 575, 626, 921, 1275, 1279
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	4 cut(s)	463, 645, 931, 1163
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	889
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	7 cut(s)	113, 299, 355, 911, 983, 1040, 1130
DpnI	GATC	2 cut(s)	11, 503
DpnII	GATC	2 cut(s)	9, 501
DraI	TTTAAA	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	51, 957
EarI	CTCTTC	2 cut(s)	51, 957
EciI	GGCGGA	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	1134
Eco130I	CCWWGG	5 cut(s)	467, 848, 878, 927, 1137
Eco24I	GRGCYC	2 cut(s)	78, 1136
Eco31I	GGTCTC	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	3 cut(s)	463, 931, 1163
Eco53kI	GAGCTC	1 cut(s)	1134
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	1134
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	5 cut(s)	467, 848, 878, 927, 1137
EcoT38I	GRGCYC	2 cut(s)	78, 1136
ErhI	CCWWGG	5 cut(s)	467, 848, 878, 927, 1137
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	1 cut(s)	449
Fnu4HI	GCNGC	4 cut(s)	134, 152, 360, 444
FokI	GGATG	3 cut(s)	494, 767, 827
FriOI	GRGCYC	2 cut(s)	78, 1136
Fsp4HI	GCNGC	4 cut(s)	134, 152, 360, 444
FspBI	CTAG	5 cut(s)	456, 765, 920, 963, 1169
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	4 cut(s)	134, 152, 360, 444
GsuI	CTGGAG	2 cut(s)	1131, 1145
HaeII	RGCGCY	1 cut(s)	580
HaeIII	GGCC	1 cut(s)	647
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	579
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	1215
HindII	GTYRAC	1 cut(s)	1215
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	3 cut(s)	698, 711, 818
HphI	GGTGA	2 cut(s)	505, 653
Hpy166II	GTNNAC	2 cut(s)	542, 1215
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	8 cut(s)	13, 209, 374, 456, 572, 777, 1085, 1169
Hpy8I	GTNNAC	2 cut(s)	542, 1215
Hpy99I	CGWCG	2 cut(s)	269, 979
HpyAV	CCTTC	5 cut(s)	526, 701, 745, 1068, 1175
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 368, 833
HpyF3I	CTNAG	7 cut(s)	113, 299, 355, 911, 983, 1040, 1130
HpySE526I	ACGT	1 cut(s)	544
HspAI	GCGC	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	9, 501
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	6 cut(s)	73, 440, 494, 1035, 1126, 1139
Lsp1109I	GCAGC	4 cut(s)	138, 145, 346, 430
LweI	GCATC	2 cut(s)	621, 1212
MaeI	CTAG	5 cut(s)	456, 765, 920, 963, 1169
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	1 cut(s)	1023
MalI	GATC	2 cut(s)	11, 503
MboI	GATC	2 cut(s)	9, 501
MboII	GAAGA	9 cut(s)	38, 197, 424, 496, 607, 944, 1078, 1250, 1271
MfeI	CAATTG	2 cut(s)	702, 1191
MhlI	GDGCHC	3 cut(s)	78, 1082, 1136
MluCI	AATT	9 cut(s)	408, 563, 702, 745, 829, 860, 1191, 1241, 1263
MlyI	GAGTC	2 cut(s)	692, 827
MmeI	TCCRAC	4 cut(s)	211, 540, 880, 1179
MseI	TTAA	2 cut(s)	311, 474
MslI	CAYNNNNRTG	2 cut(s)	593, 1030
MspA1I	CMGCKG	1 cut(s)	359
MunI	CAATTG	2 cut(s)	702, 1191
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	3 cut(s)	248, 368, 833
NcoI	CCATGG	4 cut(s)	848, 878, 927, 1137
NdeII	GATC	2 cut(s)	9, 501
NheI	GCTAGC	1 cut(s)	919
NlaIV	GGNNCC	6 cut(s)	75, 465, 496, 846, 1037, 1079
NmuCI	GTSAC	1 cut(s)	1023
NruI	TCGCGA	1 cut(s)	573
PaqCI	CACCTGC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	711
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	4 cut(s)	135, 153, 361, 445
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	2 cut(s)	692, 826
PpsI	GAGTC	2 cut(s)	692, 826
Ppu21I	YACGTR	1 cut(s)	545
PshAI	GACNNNNGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	1136
PspN4I	GGNNCC	6 cut(s)	75, 465, 496, 846, 1037, 1079
PspPI	GGNCC	4 cut(s)	463, 645, 931, 1163
PvuI	CGATCG	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	359
RruI	TCGCGA	1 cut(s)	573
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	2 cut(s)	593, 1030
SacI	GAGCTC	1 cut(s)	1136
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	311, 474
SatI	GCNGC	4 cut(s)	134, 152, 360, 444
Sau3AI	GATC	2 cut(s)	9, 501
Sau96I	GGNCC	4 cut(s)	463, 645, 931, 1163
SchI	GAGTC	2 cut(s)	692, 827
SduI	GDGCHC	3 cut(s)	78, 1082, 1136
SfaNI	GCATC	2 cut(s)	621, 1212
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	3 cut(s)	463, 931, 1163
SmiMI	CAYNNNNRTG	2 cut(s)	593, 1030
SmlI	CTYRAG	3 cut(s)	372, 1083, 1226
SmoI	CTYRAG	3 cut(s)	372, 1083, 1226
Sse9I	AATT	9 cut(s)	408, 563, 702, 745, 829, 860, 1191, 1241, 1263
SsiI	CCGC	1 cut(s)	438
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	5 cut(s)	456, 765, 920, 963, 1169
SstI	GAGCTC	1 cut(s)	1136
StyI	CCWWGG	5 cut(s)	467, 848, 878, 927, 1137
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	8, 977
TasI	AATT	9 cut(s)	408, 563, 702, 745, 829, 860, 1191, 1241, 1263
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	2 cut(s)	311, 474
Tru9I	TTAA	2 cut(s)	311, 474
TscAI	CASTG	3 cut(s)	186, 655, 999
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	4 cut(s)	133, 151, 359, 443
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	4 cut(s)	496, 607, 1079, 1274
TspRI	CASTG	3 cut(s)	186, 655, 999
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	3 cut(s)	463, 931, 1163
XapI	RAATTY	3 cut(s)	745, 829, 860
XbaI	TCTAGA	2 cut(s)	455, 1168
XspI	CTAG	5 cut(s)	456, 765, 920, 963, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.