FvH4_2g23730

Antifungal protein ginkbilobin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017603
Physical Location & Seq
Forward (+)
19421070 .. 19421480
411 bp
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UTR
Exon/CDS
Intron
FvH4_2g23730.t1

Sequence Viewer

Length: 411 bp
ATGGGTGTTCTTCTTCATCATCTCAACATTGCAGTCACTGTAATCTCATTCTTTGCGTTCTCCACTGTGATCAGAGGCGTTCCGGATACAAATATATCGAGTGTTCTGTGCAACCAAGGTGTGTATACTTCTGGTGATCCTTTTGCTATAAGCCTTGCCTATATTCTTCAAGAACTGGAGACTGCAACATCAGCACAGAAGAACTATGATTACTATGACATATCTCCATACCCTAATGCTTTTGCTTACGGCCATGCTTCTTGCAACCCGAATATGACGAGCTCAGACTGCACTACTTGCCTCGGTGCTGCGAAAACCGATATGTTAGCTACTTGTCAGAGCAATATAGGGGGTCGTGCTGTTCTCGGTGACTGTTCAATCAGGTATGAGCAATACCCTTTCACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

137

Amino Acids

14.7

Weight (kDa)

4.72

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 37 - 132 7.5e-13 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017603)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23730
malus_domestica MD11G1287200.v1.1
prunus_persica Prupe.8G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291211
rosa_laevigata RLG00000012133
rosa_multiflora Rmu_sc0013203.1_g000019
rosa_roxburghii Rroxscaffold_7G00176250
rosa_rugosa Rorug06G0218400
rosa_samantha Rh6BG336600 Rh6CG342900 Rh6DG329900
rosa_wichuraiana Rw6G028620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 82
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 250
AgsI TTSAA 2 cut(s) 170, 378
AluBI AGCT 2 cut(s) 282, 329
AluI AGCT 2 cut(s) 282, 329
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 38
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 146, 380
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 79
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 173
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 115, 301
BsaWI WCCGGW 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 115, 301
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 69, 136
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 296
BspEI TCCGGA 1 cut(s) 82
BspPI GGATC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 115, 301
BssMI GATC 2 cut(s) 69, 136
BssNAI GTATAC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 115
Bst1107I GTATAC 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 40, 67, 374
BstAPI GCANNNNNTGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 283
BstKTI GATC 2 cut(s) 72, 139
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 69, 136
BstMWI GCNNNNNNNGC 3 cut(s) 191, 288, 297
BstV1I GCAGC 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 36, 63, 402
CaiI CAGNNNCTG 1 cut(s) 38
CviAII CATG 1 cut(s) 254
CviJI RGCY 4 cut(s) 153, 252, 282, 329
CviKI_1 RGCY 4 cut(s) 153, 252, 282, 329
DdeI CTNAG 1 cut(s) 283
DpnI GATC 2 cut(s) 71, 138
DpnII GATC 2 cut(s) 69, 136
EaeI YGGCCR 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 257
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 83
Hin1II CATG 1 cut(s) 257
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 146, 380
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 74, 286, 339
Hpy188III TCNNGA 2 cut(s) 83, 170
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 3 cut(s) 40, 67, 374
HpyCH4V TGCA 5 cut(s) 32, 111, 185, 264, 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 288, 297
HpyF3I CTNAG 1 cut(s) 283
Hsp92II CATG 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 136
LpnPI CCDG 4 cut(s) 96, 117, 161, 367
Lsp1109I GCAGC 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 34, 368
MalI GATC 2 cut(s) 71, 138
MboI GATC 2 cut(s) 69, 136
MboII GAAGA 3 cut(s) 5, 158, 211
MhlI GDGCHC 1 cut(s) 284
MnlI CCTC 2 cut(s) 68, 311
MroI TCCGGA 1 cut(s) 82
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 191, 288, 297
NdeII GATC 2 cut(s) 69, 136
NlaIII CATG 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 34, 368
PkrI GCNGC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 284
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PstNI CAGNNNCTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 284
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 2 cut(s) 69, 136
SduI GDGCHC 1 cut(s) 284
SetI ASST 4 cut(s) 121, 284, 331, 386
SstI GAGCTC 1 cut(s) 284
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 40, 67, 374
TaqI TCGA 1 cut(s) 98
TscAI CASTG 3 cut(s) 43, 70, 409
TseFI GTSAC 2 cut(s) 34, 368
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 2 cut(s) 34, 368
TspDTI ATGAA 1 cut(s) 5
TspRI CASTG 3 cut(s) 43, 70, 409
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.