Rorug06G0218400

Antifungal protein ginkbilobin-2-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
34874055 .. 34877608
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0218400.1

Sequence Viewer

Length: 1227 bp
ATGGAAAATAAAGACGATGAATTTTTTTATCAGCATTGTAGTAACACTGAGAATGAGCAAAGAGGATGTGAAGATGATGCGATTGGTGGTGAGACTAATGAGGAACCTGAATACGATATTCAAGAGCCCAGTGATGCTAAACATGTGGATTCTGGTTTAGAAGGTTTATGTATCTTGGATGGTAAGAAGCAAGCAGAAGGTGAGAATATCCCAGTTCTTGGCTTGTCAACGTTACCATCCAAGTACTATTTAAAAAGATGGAGACGAGATGCTAGACAAGGAATTGATTTTGAATGTTATGGGCAAGCAAATTTTAGTGATCGGAGCGCATCTTCTGCACTCCAATATAGTCACTTGTCTCATATAGCACAAAGAATTGTAGCAAAAGGTGCAAATGATAAGCAATCACCCACTTTGGTGGAGTCTAAATTGTTGGCGTTGGAGGCAGAATTGGATGGCAATTTATCCATTGGACAAGAACATGAAACAAATGGTGATATAGATTCAGACGATCAAGTGAATGAAAATAATACAAATTTGGTTTTGCGTGATCCAAAAGTTAAGAGGCATAGAAGGCGCGGTAAAGGTAAGAGAAATAATGATTTGGGATCTAACAAGCAATCAAAAAAGAGATCTTCATCAGTACGGCAGGAACAAGAGGATGGTCCAGTACCCCCTAAAGAAAAAAATGTCTCTGTATCAAAGAAAATGAAAGCTCCATCTAAAAGAAAAGATTCTCAGGAACCCAACTCATATGAACATGAGAAGAGTGGCCCTTCAAATTCATATGAACATGTTCAGGAACAAGAGGATGCTCCAGTACCCCCTAAAGAACAAAATGTATCTGTATCAAAGAAAAGGAAAGCTCCATCTAAAAGAAAATATTCTCAGGAACCCAACTCATATGAACATGAGAAGACTGACCCTTCAAATTCATATGAACATGTTCAGGGATCAATTGGATTGGTTAATCAAAATCAATCAAATATGCCCTTCATACGTCCTGAATTTCAAACAACTTTTGGTGCTCAAGGCATTCCCTCGCATTATCCTTATGGATTTCCACCAACAGGTTCTATTGTTCATGCAATTCCAAGTCAATCACTTGGTTACCAACCTATTCGACCAATGTTTGATTATTCACTTATGTATTCGCAGGCCATCACCCAACTAAGACCTCAAGGACCAACTCTCCAACTGAATTTTCCAGATCCATCAAAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

45.86

Weight (kDa)

6.0

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017603)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23730
malus_domestica MD11G1287200.v1.1
prunus_persica Prupe.8G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291211
rosa_laevigata RLG00000012133
rosa_multiflora Rmu_sc0013203.1_g000019
rosa_roxburghii Rroxscaffold_7G00176250
rosa_rugosa Rorug06G0218400
rosa_samantha Rh6BG336600 Rh6CG342900 Rh6DG329900
rosa_wichuraiana Rw6G028620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AccII CGCG 1 cut(s) 579
AciI CCGC 1 cut(s) 579
AclI AACGTT 1 cut(s) 230
AclWI GGATC 4 cut(s) 545, 616, 961, 1205
AcsI RAATTY 7 cut(s) 20, 310, 535, 781, 931, 1007, 1201
AfaI GTAC 4 cut(s) 245, 645, 672, 822
AfiI CCNNNNNNNGG 2 cut(s) 218, 1070
AflIII ACRYGT 3 cut(s) 142, 793, 943
AgsI TTSAA 5 cut(s) 122, 293, 780, 930, 1013
AjuI GAANNNNNNNTTGG 2 cut(s) 1188, 1220
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 2 cut(s) 716, 866
AluI AGCT 2 cut(s) 716, 866
Alw21I GWGCWC 1 cut(s) 1030
Alw26I GTCTC 4 cut(s) 86, 256, 363, 697
AlwI GGATC 4 cut(s) 545, 616, 961, 1205
AoxI GGCC 2 cut(s) 772, 1158
ApoI RAATTY 7 cut(s) 20, 310, 535, 781, 931, 1007, 1201
Asp700I GAANNNNTTC 4 cut(s) 733, 795, 883, 945
AspLEI GCGC 2 cut(s) 329, 579
AspS9I GGNCC 3 cut(s) 665, 773, 1184
AsuHPI GGTGA 5 cut(s) 101, 212, 399, 506, 1156
AvaII GGWCC 2 cut(s) 665, 1184
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 1030
BccI CCATC 9 cut(s) 173, 244, 252, 449, 656, 727, 877, 1169, 1222
BceAI ACGGC 1 cut(s) 662
BcoDI GTCTC 4 cut(s) 86, 256, 363, 697
BfaI CTAG 1 cut(s) 273
BglII AGATCT 1 cut(s) 632
BmcAI AGTACT 1 cut(s) 245
Bme18I GGWCC 2 cut(s) 665, 1184
BmgT120I GGNCC 3 cut(s) 665, 773, 1184
BmiI GGNNCC 3 cut(s) 105, 744, 894
BmrI ACTGGG 2 cut(s) 123, 206
BmsI GCATC 5 cut(s) 67, 124, 259, 338, 802
BmuI ACTGGG 2 cut(s) 123, 206
BpiI GAAGAC 1 cut(s) 923
BpmI CTGGAG 1 cut(s) 801
BpuEI CTTGAG 2 cut(s) 1014, 1164
BsaBI GATNNNNATC 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 1176, 1206
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 1070
Bse1I ACTGG 4 cut(s) 129, 212, 668, 818
Bse8I GATNNNNATC 1 cut(s) 637
BseGI GGATG 6 cut(s) 71, 184, 236, 460, 667, 817
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 218, 1070
BseMII CTCAG 3 cut(s) 39, 752, 902
BseNI ACTGG 4 cut(s) 129, 212, 668, 818
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 2 cut(s) 774, 1160
BsiHKAI GWGCWC 1 cut(s) 1030
BslI CCNNNNNNNGG 2 cut(s) 218, 1070
BsmAI GTCTC 4 cut(s) 86, 256, 363, 697
BsmBI CGTCTC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 2 cut(s) 774, 1160
Bsp1286I GDGCHC 2 cut(s) 129, 1030
Bsp143I GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
BspACI CCGC 1 cut(s) 579
BspANI GGCC 2 cut(s) 774, 1160
BspCNI CTCAG 3 cut(s) 40, 751, 901
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 3 cut(s) 105, 744, 894
BspPI GGATC 4 cut(s) 545, 616, 961, 1205
BsrI ACTGG 4 cut(s) 129, 212, 668, 818
BssMI GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
Bst6I CTCTTC 1 cut(s) 761
BstAPI GCANNNNNTGC 2 cut(s) 335, 389
BstC8I GCNNGC 3 cut(s) 192, 306, 1158
BstDEI CTNAG 4 cut(s) 48, 738, 888, 1172
BstEII GGTNACC 1 cut(s) 1109
BstF5I GGATG 6 cut(s) 71, 184, 236, 460, 667, 817
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 2 cut(s) 329, 579
BstKTI GATC 7 cut(s) 322, 514, 553, 611, 635, 956, 1213
BstMAI GTCTC 4 cut(s) 86, 256, 363, 697
BstMBI GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
BstMWI GCNNNNNNNGC 4 cut(s) 335, 389, 443, 574
BstNSI RCATGY 3 cut(s) 146, 797, 947
BstPI GGTNACC 1 cut(s) 1109
BstUI CGCG 1 cut(s) 579
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 3 cut(s) 608, 632, 1210
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 3 cut(s) 608, 632, 1210
BsuRI GGCC 2 cut(s) 774, 1160
BtsCI GGATG 6 cut(s) 71, 184, 236, 460, 667, 817
BtsIMutI CAGTG 2 cut(s) 45, 136
Cac8I GCNNGC 3 cut(s) 192, 306, 1158
CfoI GCGC 2 cut(s) 329, 579
Cfr13I GGNCC 3 cut(s) 665, 773, 1184
Csp6I GTAC 4 cut(s) 244, 644, 671, 821
CviAII CATG 7 cut(s) 143, 482, 761, 794, 911, 944, 1085
CviJI RGCY 6 cut(s) 127, 222, 716, 774, 866, 1160
CviKI_1 RGCY 6 cut(s) 127, 222, 716, 774, 866, 1160
CviQI GTAC 4 cut(s) 244, 644, 671, 821
DdeI CTNAG 4 cut(s) 48, 738, 888, 1172
DpnI GATC 7 cut(s) 321, 513, 552, 610, 634, 955, 1212
DpnII GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
DraI TTTAAA 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 665, 1184
Eco91I GGTNACC 1 cut(s) 1109
EcoO65I GGTNACC 1 cut(s) 1109
EcoT38I GRGCYC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 7 cut(s) 146, 485, 764, 797, 914, 947, 1088
FatI CATG 7 cut(s) 142, 481, 760, 793, 910, 943, 1084
FauNDI CATATG 4 cut(s) 754, 787, 904, 937
FokI GGATG 6 cut(s) 78, 191, 223, 467, 674, 824
FriOI GRGCYC 1 cut(s) 129
FspBI CTAG 1 cut(s) 273
GlaI GCGC 2 cut(s) 328, 578
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 2 cut(s) 774, 1160
HhaI GCGC 2 cut(s) 329, 579
Hin1II CATG 7 cut(s) 146, 485, 764, 797, 914, 947, 1088
Hin6I GCGC 2 cut(s) 327, 577
HinP1I GCGC 2 cut(s) 327, 577
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 4 cut(s) 149, 422, 503, 734
HphI GGTGA 5 cut(s) 101, 212, 399, 506, 1156
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 324, 508
Hpy188III TCNNGA 6 cut(s) 122, 740, 800, 890, 1004, 1208
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 6 cut(s) 155, 191, 567, 786, 936, 1003
HpyCH4IV ACGT 2 cut(s) 230, 1000
HpyCH4V TGCA 3 cut(s) 338, 392, 1088
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 389, 443, 574
HpyF3I CTNAG 4 cut(s) 48, 738, 888, 1172
HpySE526I ACGT 2 cut(s) 230, 1000
Hsp92II CATG 7 cut(s) 146, 485, 764, 797, 914, 947, 1088
HspAI GCGC 2 cut(s) 327, 577
Kzo9I GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
LmnI GCTCC 4 cut(s) 324, 721, 820, 871
LweI GCATC 5 cut(s) 67, 124, 259, 338, 802
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 230, 1000
MaeIII GTNAC 4 cut(s) 41, 231, 350, 1109
MalI GATC 7 cut(s) 321, 513, 552, 610, 634, 955, 1212
MboI GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
MboII GAAGA 5 cut(s) 83, 324, 627, 778, 928
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 3 cut(s) 608, 632, 1210
MhlI GDGCHC 2 cut(s) 129, 1030
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 420, 1219
MnlI CCTC 8 cut(s) 56, 94, 436, 558, 652, 802, 1051, 1188
MroXI GAANNNNTTC 4 cut(s) 733, 795, 883, 945
MseI TTAA 3 cut(s) 251, 561, 969
MslI CAYNNNNRTG 1 cut(s) 416
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 1035
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 4 cut(s) 335, 389, 443, 574
NdeI CATATG 4 cut(s) 754, 787, 904, 937
NdeII GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
NlaIII CATG 7 cut(s) 146, 485, 764, 797, 914, 947, 1088
NlaIV GGNNCC 3 cut(s) 105, 744, 894
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 3 cut(s) 146, 797, 947
OliI CACNNNNGTG 1 cut(s) 416
PciI ACATGT 3 cut(s) 142, 793, 943
PctI GAATGC 1 cut(s) 1035
PdmI GAANNNNTTC 4 cut(s) 733, 795, 883, 945
PfeI GAWTC 3 cut(s) 149, 503, 734
PflMI CCANNNNNTGG 1 cut(s) 218
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PscI ACATGT 3 cut(s) 142, 793, 943
Psp1406I AACGTT 1 cut(s) 230
PspEI GGTNACC 1 cut(s) 1109
PspN4I GGNNCC 3 cut(s) 105, 744, 894
PspPI GGNCC 3 cut(s) 665, 773, 1184
PsuI RGATCY 3 cut(s) 608, 632, 1210
RsaI GTAC 4 cut(s) 245, 645, 672, 822
RsaNI GTAC 4 cut(s) 244, 644, 671, 821
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 251, 561, 969
Sau3AI GATC 7 cut(s) 319, 511, 550, 608, 632, 953, 1210
Sau96I GGNCC 3 cut(s) 665, 773, 1184
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 2 cut(s) 129, 1030
SfaNI GCATC 5 cut(s) 67, 124, 259, 338, 802
SinI GGWCC 2 cut(s) 665, 1184
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 1029, 1179
SmoI CTYRAG 2 cut(s) 1029, 1179
SsiI CCGC 1 cut(s) 579
SspI AATATT 1 cut(s) 884
SspMI CTAG 1 cut(s) 273
TaiI ACGT 2 cut(s) 233, 1003
TaqI TCGA 1 cut(s) 1123
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 3 cut(s) 149, 503, 734
Tru1I TTAA 3 cut(s) 251, 561, 969
Tru9I TTAA 3 cut(s) 251, 561, 969
TscAI CASTG 2 cut(s) 52, 136
TseFI GTSAC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 350
TspRI CASTG 2 cut(s) 52, 136
Van91I CCANNNNNTGG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 665, 1184
XapI RAATTY 7 cut(s) 20, 310, 535, 781, 931, 1007, 1201
XceI RCATGY 3 cut(s) 146, 797, 947
XmnI GAANNNNTTC 4 cut(s) 733, 795, 883, 945
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.