RLG00000012133

Antifungal protein ginkbilobin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017603
Physical Location & Seq
Reverse (-)
15570963 .. 15571379
417 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012133

Sequence Viewer

Length: 411 bp
ATGGGTGTTCTTCTTCTTCATCTCAAAGTTGCAGCAACTATAATCTCATTCTCAGGGTTCTGCACTGTGATCAGAGGCGTTCCGGATACGAATATAACAAGTGTTCTGTGCAATCAAGGTGTGTATACTTCTGGTGATCCATTTGCTATAAGCCTTGCATATGTTCTTCAGGAATTGGAGACTGCAACAGCAGCACACAAGAACTATGATTACTATGACATATCTCCATACCCTAATGCTTTTGCTTACGGCCATGCTTCTTGCAACCCGAACGTGACAAGCTCCGACTGCACTACTTGTCTCGGTATTGCGAAAACCGACATGTTAGGTACTTGTCAGAGCAATATAGGGGGTCGTGCTGTTCTTGGTGATTGTTCAATCAGGTACGAGCAATACCCATTCACCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

137

Amino Acids

14.6

Weight (kDa)

4.92

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 37 - 132 2.2e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017603)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23730
malus_domestica MD11G1287200.v1.1
prunus_persica Prupe.8G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291211
rosa_laevigata RLG00000012133
rosa_multiflora Rmu_sc0013203.1_g000019
rosa_roxburghii Rroxscaffold_7G00176250
rosa_rugosa Rorug06G0218400
rosa_samantha Rh6BG336600 Rh6CG342900 Rh6DG329900
rosa_wichuraiana Rw6G028620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 82
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 331, 386
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 378
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 173, 305
AlwI GGATC 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 32, 191
AsuHPI GGTGA 3 cut(s) 146, 380, 394
BbvI GCAGC 2 cut(s) 44, 203
BceAI ACGGC 1 cut(s) 265
BciVI GTATCC 1 cut(s) 79
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 173, 305
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 2 cut(s) 33, 192
BlsI GCNGC 2 cut(s) 34, 193
BsaWI WCCGGW 1 cut(s) 82
BseAI TCCGGA 1 cut(s) 82
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 44, 203
BsgI GTGCAG 2 cut(s) 46, 274
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 173, 305
BsnI GGCC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 69, 136
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 82
BspPI GGATC 1 cut(s) 131
BssMI GATC 2 cut(s) 69, 136
BssNAI GTATAC 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 52
BstKTI GATC 2 cut(s) 72, 139
BstMAI GTCTC 2 cut(s) 173, 305
BstMBI GATC 2 cut(s) 69, 136
BstMWI GCNNNNNNNGC 2 cut(s) 191, 288
BstNSI RCATGY 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 44, 203
BstZ17I GTATAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 63
Csp6I GTAC 2 cut(s) 330, 385
CviAII CATG 2 cut(s) 254, 322
CviJI RGCY 3 cut(s) 153, 252, 282
CviKI_1 RGCY 3 cut(s) 153, 252, 282
CviQI GTAC 2 cut(s) 330, 385
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 71, 138
DpnII GATC 2 cut(s) 69, 136
EaeI YGGCCR 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 152
FaeI CATG 2 cut(s) 257, 325
FatI CATG 2 cut(s) 253, 321
FauNDI CATATG 1 cut(s) 160
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 33, 192
Fsp4HI GCNGC 2 cut(s) 33, 192
GluI GCNGC 2 cut(s) 33, 192
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 83
Hin1II CATG 2 cut(s) 257, 325
HpaII CCGG 1 cut(s) 83
HphI GGTGA 3 cut(s) 146, 380, 394
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 74, 286, 339
Hpy188III TCNNGA 2 cut(s) 83, 170
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 7 cut(s) 32, 63, 111, 158, 185, 264, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 288
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 2 cut(s) 257, 325
Kpn2I TCCGGA 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 2 cut(s) 69, 136
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 39, 96, 117, 155, 367
Lsp1109I GCAGC 2 cut(s) 44, 203
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 71, 138
MboI GATC 2 cut(s) 69, 136
MboII GAAGA 3 cut(s) 5, 8, 158
MluCI AATT 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 1 cut(s) 68
MroI TCCGGA 1 cut(s) 82
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 191, 288
NdeI CATATG 1 cut(s) 160
NdeII GATC 2 cut(s) 69, 136
NlaIII CATG 2 cut(s) 257, 325
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PkrI GCNGC 2 cut(s) 34, 193
PscI ACATGT 1 cut(s) 321
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
RsaI GTAC 2 cut(s) 331, 386
RsaNI GTAC 2 cut(s) 330, 385
SatI GCNGC 2 cut(s) 33, 192
Sau3AI GATC 2 cut(s) 69, 136
SetI ASST 5 cut(s) 121, 276, 284, 331, 386
Sse9I AATT 1 cut(s) 173
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 276
TasI AATT 1 cut(s) 173
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 32, 191
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 8
TspRI CASTG 1 cut(s) 70
XceI RCATGY 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.