Rroxscaffold_7G00176250

Antifungal protein ginkbilobin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017603
Physical Location & Seq
Reverse (-)
15725382 .. 15726587
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176250.1

Sequence Viewer

Length: 438 bp
ATGACGTTGGGTCAAGGTTGCAATCAAGCTTGCCTAGTAGCCATTAGGCTAGCTTGCTTTCTTTGGGTATGTGATGGGCCTTTGGGCTTCATAGGGAGTGGAGGCGTTCCGGATACGAATATAACAAGTGTTCTGTGCAACCAAGGTGTGTATACTTCTGGTGATCCATTTGCTATAAGCCTTGCATATGTTCTTCAGGAACTGGAGACTGCAACAGCAGCACACAAGAACTATGATTACTATGACATATCTCCCTATCCTAATGCTTTTGCTTACGGCCATGCTTCTTGCAACCCGAACGTGACAAGCTCCGACTGCACTACTTGTCTCGGTATTGCGAAAACCGACATGTTAGGTACTTGTCAGAGCAATATAGGGGGTCGTGCTGTTCTTGGTGATTGTTCAATCAGGTATGAGCAATACCCATTCACCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

145

Amino Acids

15.42

Weight (kDa)

4.43

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 46 - 141 2.6e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017603)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23730
malus_domestica MD11G1287200.v1.1
prunus_persica Prupe.8G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291211
rosa_laevigata RLG00000012133
rosa_multiflora Rmu_sc0013203.1_g000019
rosa_roxburghii Rroxscaffold_7G00176250
rosa_rugosa Rorug06G0218400
rosa_samantha Rh6BG336600 Rh6CG342900 Rh6DG329900
rosa_wichuraiana Rw6G028620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 109
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 1 cut(s) 405
AhdI GACNNNNNGTC 1 cut(s) 9
AluBI AGCT 3 cut(s) 29, 53, 309
AluI AGCT 3 cut(s) 29, 53, 309
Alw26I GTCTC 2 cut(s) 200, 332
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 202
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 2 cut(s) 77, 277
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 3 cut(s) 173, 407, 421
AsuNHI GCTAGC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 292
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 200, 332
BfaI CTAG 2 cut(s) 35, 50
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 77
BmtI GCTAGC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 301
BshFI GGCC 2 cut(s) 79, 279
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 200, 332
BsnI GGCC 2 cut(s) 79, 279
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 2 cut(s) 79, 279
BspEI TCCGGA 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 163
BssNAI GTATAC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 31, 51, 55
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 2 cut(s) 200, 332
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 218, 315
BstNSI RCATGY 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 230
BstZ17I GTATAC 1 cut(s) 153
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 79, 279
Cac8I GCNNGC 3 cut(s) 31, 51, 55
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 357
CviAII CATG 2 cut(s) 281, 349
CviJI RGCY 9 cut(s) 29, 41, 49, 53, 79, 87, 180, 279, 309
CviKI_1 RGCY 9 cut(s) 29, 41, 49, 53, 79, 87, 180, 279, 309
CviQI GTAC 1 cut(s) 357
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 277
Eam1105I GACNNNNNGTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 284, 352
FatI CATG 2 cut(s) 280, 348
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 35, 50
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 79, 279
HapII CCGG 1 cut(s) 110
Hin1II CATG 2 cut(s) 284, 352
HindIII AAGCTT 1 cut(s) 27
HpaII CCGG 1 cut(s) 110
HphI GGTGA 3 cut(s) 173, 407, 421
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 313, 366
Hpy188III TCNNGA 2 cut(s) 110, 197
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4IV ACGT 2 cut(s) 5, 300
HpyCH4V TGCA 6 cut(s) 21, 138, 185, 212, 291, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 315
HpySE526I ACGT 2 cut(s) 5, 300
Hsp92II CATG 2 cut(s) 284, 352
Kpn2I TCCGGA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 5 cut(s) 123, 144, 182, 188, 394
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 2 cut(s) 35, 50
MaeII ACGT 2 cut(s) 5, 300
MaeIII GTNAC 1 cut(s) 301
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 1 cut(s) 95
MroI TCCGGA 1 cut(s) 109
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 218, 315
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 163
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 2 cut(s) 284, 352
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 352
PciI ACATGT 1 cut(s) 348
PkrI GCNGC 1 cut(s) 220
PscI ACATGT 1 cut(s) 348
PspPI GGNCC 1 cut(s) 77
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 77
SetI ASST 9 cut(s) 8, 19, 31, 55, 148, 303, 311, 358, 413
SspMI CTAG 2 cut(s) 35, 50
StyI CCWWGG 1 cut(s) 142
TaiI ACGT 2 cut(s) 8, 303
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 79
XceI RCATGY 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 152
XspI CTAG 2 cut(s) 35, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.