MD11G1287200.v1.1

Antifungal protein ginkbilobin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017603
Physical Location & Seq
Forward (+)
40700347 .. 40700748
402 bp
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UTR
Exon/CDS
Intron
MD11G1287200.v1.1.491

Sequence Viewer

Length: 402 bp
ATGAAAATTGCAGTGATCCTAACCCTAATCGGATTCGTAGGGTTTTTCTTCTGCAGTGTGGTCAGATGCACTCCAGACACAAACGTGACAAGCGTTCTATGCAACGGAGGGTTGTACACAGCTGGTGATCCTTTTGCTGTAAGCCTAGCCTATGTTCTTCAAGAATTGGAAACTGCCGCACCAGCTCACAAGAACTATGATTACTACAACATATCTCCTTACCCTAATGCGTTTGCGTACGGCCATGCTTCTTGTAACAAAAACATCACAGCCCCAGATTGCACTACTTGTCTTGGTGCTGCAAAAACAGACATGTCAGTGACGTGTCAAAATGCGATAGGCGGTCGTGCAGTTCTGGTTGATTGTGCAGTACGGTATGAGCAATACCCATTTACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stress-antifung

Protein Analysis

134

Amino Acids

14.3

Weight (kDa)

5.13

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 34 - 129 3.9e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017603)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23730
malus_domestica MD11G1287200.v1.1
prunus_persica Prupe.8G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291211
rosa_laevigata RLG00000012133
rosa_multiflora Rmu_sc0013203.1_g000019
rosa_roxburghii Rroxscaffold_7G00176250
rosa_rugosa Rorug06G0218400
rosa_samantha Rh6BG336600 Rh6CG342900 Rh6DG329900
rosa_wichuraiana Rw6G028620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 177, 342
AclWI GGATC 2 cut(s) 10, 122
AcoI YGGCCR 1 cut(s) 241
AfaI GTAC 3 cut(s) 116, 239, 372
AflIII ACRYGT 2 cut(s) 312, 323
AgsI TTSAA 1 cut(s) 161
AjiI CACGTC 1 cut(s) 324
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 2 cut(s) 122, 185
AluI AGCT 2 cut(s) 122, 185
AlwI GGATC 2 cut(s) 10, 122
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 137
BbvI GCAGC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 256
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 2 cut(s) 177, 300
BlsI GCNGC 2 cut(s) 178, 301
BmgBI CACGTC 1 cut(s) 324
BmsI GCATC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 2 cut(s) 369, 387
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 346
BsiWI CGTACG 1 cut(s) 237
BsnI GGCC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 2 cut(s) 15, 127
BspACI CCGC 2 cut(s) 177, 342
BspANI GGCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 56
BspPI GGATC 2 cut(s) 10, 122
BsrGI TGTACA 1 cut(s) 114
BssMI GATC 2 cut(s) 15, 127
Bst4CI ACNGT 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 114
BstKTI GATC 2 cut(s) 18, 130
BstMBI GATC 2 cut(s) 15, 127
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 99, 182
BstNSI RCATGY 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 243
BtrI CACGTC 1 cut(s) 324
BtsI GCAGTG 2 cut(s) 18, 61
BtsIMutI CAGTG 3 cut(s) 18, 61, 324
Csp6I GTAC 3 cut(s) 115, 238, 371
CviAII CATG 2 cut(s) 245, 313
CviJI RGCY 6 cut(s) 122, 144, 149, 185, 243, 272
CviKI_1 RGCY 6 cut(s) 122, 144, 149, 185, 243, 272
CviQI GTAC 3 cut(s) 115, 238, 371
DpnI GATC 2 cut(s) 17, 129
DpnII GATC 2 cut(s) 15, 127
EaeI YGGCCR 1 cut(s) 241
FaeI CATG 2 cut(s) 248, 316
FaiI YATR 7 cut(s) 100, 153, 198, 212, 246, 314, 378
FatI CATG 2 cut(s) 244, 312
Fnu4HI GCNGC 2 cut(s) 177, 300
Fsp4HI GCNGC 2 cut(s) 177, 300
FspBI CTAG 1 cut(s) 146
GluI GCNGC 2 cut(s) 177, 300
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 243
Hin1II CATG 2 cut(s) 248, 316
HinfI GANTC 1 cut(s) 33
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 2 cut(s) 32, 65
Hpy188III TCNNGA 2 cut(s) 74, 161
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4IV ACGT 2 cut(s) 84, 323
HpyCH4V TGCA 8 cut(s) 11, 54, 69, 102, 282, 302, 350, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 182
HpySE526I ACGT 2 cut(s) 84, 323
Hsp92II CATG 2 cut(s) 248, 316
Kzo9I GATC 2 cut(s) 15, 127
LpnPI CCDG 5 cut(s) 87, 108, 195, 288, 341
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 146
MaeII ACGT 2 cut(s) 84, 323
MaeIII GTNAC 3 cut(s) 85, 254, 319
MalI GATC 2 cut(s) 17, 129
MboI GATC 2 cut(s) 15, 127
MboII GAAGA 2 cut(s) 40, 149
MluCI AATT 2 cut(s) 6, 164
MnlI CCTC 1 cut(s) 101
MslI CAYNNNNRTG 2 cut(s) 83, 317
MspA1I CMGCKG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 99, 182
NdeII GATC 2 cut(s) 15, 127
NlaIII CATG 2 cut(s) 248, 316
NmuCI GTSAC 2 cut(s) 85, 319
NspI RCATGY 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 83
PciI ACATGT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 33
Pfl23II CGTACG 1 cut(s) 237
PkrI GCNGC 2 cut(s) 178, 301
PscI ACATGT 1 cut(s) 312
PspLI CGTACG 1 cut(s) 237
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PstI CTGCAG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 3 cut(s) 116, 239, 372
RsaNI GTAC 3 cut(s) 115, 238, 371
RseI CAYNNNNRTG 2 cut(s) 83, 317
SatI GCNGC 2 cut(s) 177, 300
Sau3AI GATC 2 cut(s) 15, 127
SetI ASST 4 cut(s) 87, 124, 187, 326
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 83, 317
Sse9I AATT 2 cut(s) 6, 164
SsiI CCGC 2 cut(s) 177, 342
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 375
TaiI ACGT 2 cut(s) 87, 326
TasI AATT 2 cut(s) 6, 164
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 33
TscAI CASTG 3 cut(s) 18, 61, 324
TseFI GTSAC 2 cut(s) 85, 319
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 85, 319
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 3 cut(s) 18, 61, 324
XceI RCATGY 1 cut(s) 316
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.