Prupe.8G242500_v2.0.a1

Antifungal protein ginkbilobin-2-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
21194075 .. 21195470
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G242500.1

Sequence Viewer

Length: 408 bp
ATGGCCATTCATCTCATGAAAATTGCAGCAACTATAGTCGTCGTCTTCATTGGGTTCTTCGGTGTGGCTACAAGCACTCCAGATACAAATATAACAAGCGTTCTCTGCAACTCTGGAGTGTATACAGCTGGTGATCCTTTTGCTGTAAGCCTAGCCTATGTTCTTAAGGAGTTGGAGACTGCAACATCAACACACAAGAATTATGACTTCTACGACATATCTCCTTACCCTAATGCATTTGCATATGGGCATGCTTCTTGTAACCAAAACATCACAACCCCAGATTGCACTACTTGTCTTGGTGCTGCAAAAACAGATATGCTAGGCACGTGTCAAAATGCGATAGGGGGTCGAGCGGTTCTTCGTGATTGTGCAATAAGGTATGAGCAATACCCATTTACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.53

Weight (kDa)

5.39

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017603)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g23730
malus_domestica MD11G1287200.v1.1
prunus_persica Prupe.8G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291211
rosa_laevigata RLG00000012133
rosa_multiflora Rmu_sc0013203.1_g000019
rosa_roxburghii Rroxscaffold_7G00176250
rosa_rugosa Rorug06G0218400
rosa_samantha Rh6BG336600 Rh6CG342900 Rh6DG329900
rosa_wichuraiana Rw6G028620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 122
AciI CCGC 1 cut(s) 356
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 330
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 329
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 128
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 26, 305
AsuHPI GGTGA 1 cut(s) 143
BalI TGGCCA 1 cut(s) 5
BbrPI CACGTG 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 38, 292
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 152, 323
BfmI CTRYAG 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 2 cut(s) 27, 306
BlsI GCNGC 2 cut(s) 28, 307
BpiI GAAGAC 1 cut(s) 37
BpmI CTGGAG 2 cut(s) 63, 135
BsaAI YACGTR 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
BseXI GCAGC 2 cut(s) 38, 292
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 15
BspPI GGATC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 356
BssMI GATC 1 cut(s) 133
BssNAI GTATAC 1 cut(s) 123
Bst1107I GTATAC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 38, 292
BstV2I GAAGAC 1 cut(s) 37
BstZ17I GTATAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 1 cut(s) 15
CviAII CATG 2 cut(s) 16, 251
CviJI RGCY 5 cut(s) 5, 68, 128, 150, 155
CviKI_1 RGCY 5 cut(s) 5, 68, 128, 150, 155
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 3
Eco72I CACGTG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 2 cut(s) 19, 254
FatI CATG 2 cut(s) 15, 250
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 27, 306
Fsp4HI GCNGC 2 cut(s) 27, 306
FspBI CTAG 2 cut(s) 152, 323
GluI GCNGC 2 cut(s) 27, 306
GsuI CTGGAG 2 cut(s) 63, 135
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 19, 254
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 123
Hpy188III TCNNGA 4 cut(s) 16, 80, 114, 365
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 8 cut(s) 26, 108, 182, 236, 242, 288, 308, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 2 cut(s) 19, 254
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 93, 99, 114, 294
Lsp1109I GCAGC 2 cut(s) 38, 292
MaeI CTAG 2 cut(s) 152, 323
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 135
MbiI CCGCTC 1 cut(s) 356
MboI GATC 1 cut(s) 133
MboII GAAGA 3 cut(s) 37, 49, 353
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 21, 199
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 153
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 238
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeI CATATG 1 cut(s) 244
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 19, 254
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PagI TCATGA 1 cut(s) 15
PkrI GCNGC 2 cut(s) 28, 307
PmaCI CACGTG 1 cut(s) 330
PmlI CACGTG 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 330
PspCI CACGTG 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 27, 306
Sau3AI GATC 1 cut(s) 133
SetI ASST 3 cut(s) 130, 332, 383
SfcI CTRYAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 254
Sse9I AATT 2 cut(s) 21, 199
SsiI CCGC 1 cut(s) 356
SspMI CTAG 2 cut(s) 152, 323
TaiI ACGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 352
TasI AATT 2 cut(s) 21, 199
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 2 cut(s) 26, 305
TspDTI ATGAA 2 cut(s) 32, 37
Vha464I CTTAAG 1 cut(s) 164
XceI RCATGY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 2 cut(s) 152, 323
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.