Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013348

Physical Location & Seq

Genomic Coordinates Forward (+)

19569817 .. 19573425

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAATTGTTTTGGACCATCTGGAGGTCCTATAGCATCTATCAACTCAATGAAAGAGATGGTGAAAGAGTTTCATGCCAATGGAATAGAGGTCATACTGGAAGTTATTTTCACCCATACTGCTGAGGGTGAAGTGCTGCAAGGAATCGATATCTCATCTTATTATCATGCAAGTACGACTGGTGATTTGGAAGCAGGAAACTCTTTGAATTGTAACCATCCAGTTGTGCAGCAAATGGTATTAGATAGTCTTCGATACTGGGTGACTGAGTTTCACATTGATGGTTTTTGTTTCATAAATGCATCATCTCTGTTACATGGGGTTAAAGGTGAGTACCAATCTCGCCCGCCTTTAGTTGAAGCAATTACTTTTGATCCACTACTGGCAAAAACCAAGTTCATTGCAGACTGCTGGGACCCTCATGAAATGGTACCAAAGGAAACTCGTTTTCCTCATTGGAAGAGATGGGCAGAAGTGAATACAAGATTCTGCAATGATGTGAGAAACTTTTTGAGGGGTGAGGGTCTTCTTAGTGACCTTGCTACACGGCTTTGTGGGAACGGCGACATCTTTTCAGATGGACGAGGCCCGGCATTCTCTTTCAATTTTATTACCAGAAATTCTGGTCTTCCTCTTGTGGACCTTGTTAGTTTCAGTGGCAGTGAGTTAGCTTCAGAACTGAGTTGGAATTGTGGGGAAGAAGGGCCTACAAGTAAAACTGCTGTACTAGAAAGACGCCTTAAACAAATCCGTAATTTTCTGTTTATCTTGTATCTTTCATTGGGTGTTCCTGTCCTTAACATGGGAGACGAGTGTGGACAATCTTCAGGTGGTTCCCCTGCATACAGTGACAGAAAATCTTTTGACTGGAAGGCACTGGAAACAGGTTTCGCTACTCAAATCACACAATTCATTGCATATTTAAGTTCACTCAGGAGGAGGCGGAGTGATCTTCTTCAGAAGAAGCACTTCTTCAAAGAAGAAAATATTGACTGGTATGGAAGTGATCAATCTTTACCTAGGTGGGAAGATCCTCTATGCAAATTCCTTGCTGTGAGGTTGAAGGCAGACCAAGATGAAGTGGAGAACCAATCAAATAGCGTATATGCTGGTTTAAGGGGTGACTTGTTTTTAGCCTTCAGTGCAGCTGATCAGTCAGAGACTGTTATTCTACCTCCACCCCAAGAAGGTATGGCATGGAGCCGTTTGGTTGACACAGCTCTCCCATTTCCTGGATTTTTCTCAACTGACGGTGAGCCTGTCATTGAGCAAATGAAGGATTTATGTGCTTATGAAATGAAGTCTCACAGTTGTGCTCTGTTTGAAGCCAGAAGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0010021 GO:0015980 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0032991 GO:0043033 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1902494 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

447

Amino Acids

49.96

Weight (kDa)

5.09

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ISOA1-3_C	PF21156	332 - 419	4.9e-06	Isoamylase 1-3, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03310 AT1G03310
fragaria_vesca	FvH4_2g23950
malus_domestica	MD03G1268800.v1.1 MD11G1289600.v1.1
prunus_persica	Prupe.8G244800_v2.0.a1
pyrus_communis	pycom11g25700
rosa_chinensis	RchiOBHm_Chr6g0291581
rosa_laevigata	RLG00000012105
rosa_multiflora	Rmu_sc0002226.1_g000007
rosa_roxburghii	Rroxscaffold_7G00175950
rosa_rugosa	Rorug06G0220400 Rorug06G0220400
rosa_samantha	Rh6AG332800 Rh6BG339600 Rh6CG346000 Rh6DG333200
rosa_wichuraiana	Rw6G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	1232
AciI	CCGC	2 cut(s)	347, 943
AclWI	GGATC	2 cut(s)	368, 1025
AcsI	RAATTY	2 cut(s)	619, 1043
AcuI	CTGAAG	4 cut(s)	657, 810, 941, 1123
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	4 cut(s)	175, 335, 432, 726
AfiI	CCNNNNNNNGG	4 cut(s)	23, 802, 1187, 1232
AgsI	TTSAA	6 cut(s)	208, 359, 604, 976, 1063, 1325
AjnI	CCWGG	1 cut(s)	1231
AleI	CACNNNNGTG	1 cut(s)	1311
AluBI	AGCT	4 cut(s)	671, 1148, 1220, 1335
AluI	AGCT	4 cut(s)	671, 1148, 1220, 1335
Alw21I	GWGCWC	1 cut(s)	1318
Alw26I	GTCTC	3 cut(s)	801, 1154, 1308
AlwI	GGATC	2 cut(s)	368, 1025
AlwNI	CAGNNNCTG	1 cut(s)	1163
AoxI	GGCC	2 cut(s)	586, 704
ApeKI	GCWGC	3 cut(s)	136, 229, 1145
ApoI	RAATTY	2 cut(s)	619, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
Asp700I	GAANNNNTTC	1 cut(s)	968
Asp718I	GGTACC	1 cut(s)	430
AspA2I	CCTAGG	1 cut(s)	1019
AspS9I	GGNCC	6 cut(s)	14, 26, 415, 587, 640, 704
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	9 cut(s)	73, 103, 140, 194, 274, 341, 530, 1133, 1265
AvaII	GGWCC	4 cut(s)	14, 26, 415, 640
AvrII	CCTAGG	1 cut(s)	1019
BanI	GGYRCC	1 cut(s)	430
BbsI	GAAGAC	3 cut(s)	242, 518, 620
Bbv12I	GWGCWC	1 cut(s)	1318
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	123, 241, 1157
BccI	CCATC	6 cut(s)	25, 52, 225, 275, 459, 572
BceAI	ACGGC	3 cut(s)	563, 577, 1188
BciT130I	CCWGG	1 cut(s)	1233
BclI	TGATCA	2 cut(s)	1006, 1150
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	3 cut(s)	801, 1154, 1308
BfaI	CTAG	2 cut(s)	728, 1020
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	3 cut(s)	137, 230, 1146
BlnI	CCTAGG	1 cut(s)	1019
BlsI	GCNGC	3 cut(s)	138, 231, 1147
Bme1390I	CCNGG	2 cut(s)	590, 1233
Bme18I	GGWCC	4 cut(s)	14, 26, 415, 640
BmgT120I	GGNCC	6 cut(s)	14, 26, 415, 587, 640, 704
BmiI	GGNNCC	5 cut(s)	416, 417, 432, 835, 1202
BmrFI	CCNGG	2 cut(s)	590, 1233
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	44, 311
BmuI	ACTGGG	1 cut(s)	268
BpiI	GAAGAC	3 cut(s)	242, 518, 620
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	736
BsaJI	CCNNGG	1 cut(s)	1019
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 802, 1187, 1232
Bse1I	ACTGG	8 cut(s)	102, 184, 221, 263, 387, 872, 882, 998
Bse3DI	GCAATG	3 cut(s)	399, 499, 912
BseBI	CCWGG	1 cut(s)	1233
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	1019
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	4 cut(s)	23, 802, 1187, 1232
BseMI	GCAATG	3 cut(s)	399, 499, 912
BseMII	CTCAG	4 cut(s)	114, 258, 671, 946
BseNI	ACTGG	8 cut(s)	102, 184, 221, 263, 387, 872, 882, 998
BseRI	GAGGAG	1 cut(s)	952
BseXI	GCAGC	3 cut(s)	123, 241, 1157
BseYI	CCCAGC	1 cut(s)	411
BsgI	GTGCAG	2 cut(s)	248, 1164
BshFI	GGCC	2 cut(s)	588, 706
BshNI	GGYRCC	1 cut(s)	430
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	1318
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	4 cut(s)	23, 802, 1187, 1232
BsmAI	GTCTC	3 cut(s)	801, 1154, 1308
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	2 cut(s)	588, 706
Bsp1286I	GDGCHC	1 cut(s)	1318
Bsp143I	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
BspACI	CCGC	2 cut(s)	347, 943
BspANI	GGCC	2 cut(s)	588, 706
BspCNI	CTCAG	4 cut(s)	115, 259, 672, 945
BspDI	ATCGAT	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	5 cut(s)	416, 417, 432, 835, 1202
BspPI	GGATC	2 cut(s)	368, 1025
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	3 cut(s)	399, 499, 912
BsrI	ACTGG	8 cut(s)	102, 184, 221, 263, 387, 872, 882, 998
BssECI	CCNNGG	1 cut(s)	1019
BssMI	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
BssNI	GRCGYC	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	1019
Bst2UI	CCWGG	1 cut(s)	1233
Bst4CI	ACNGT	4 cut(s)	848, 1165, 1253, 1310
Bst6I	CTCTTC	1 cut(s)	455
BstACI	GRCGYC	1 cut(s)	736
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	123, 267, 530, 680, 932
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	5 cut(s)	376, 952, 1009, 1033, 1153
BstMAI	GTCTC	3 cut(s)	801, 1154, 1308
BstMBI	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
BstMWI	GCNNNNNNNGC	1 cut(s)	1142
BstNI	CCWGG	1 cut(s)	1233
BstSCI	CCNGG	2 cut(s)	588, 1231
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	123, 241, 1157
BstV2I	GAAGAC	3 cut(s)	242, 518, 620
BstX2I	RGATCY	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	1030
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	588, 706
BsuTUI	ATCGAT	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	5 cut(s)	661, 667, 853, 875, 1147
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	1163
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	6 cut(s)	14, 26, 415, 587, 640, 704
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	4 cut(s)	174, 334, 431, 725
CviAII	CATG	6 cut(s)	74, 167, 317, 422, 802, 1197
CviQI	GTAC	4 cut(s)	174, 334, 431, 725
DdeI	CTNAG	5 cut(s)	123, 267, 530, 680, 932
DpnI	GATC	5 cut(s)	375, 951, 1008, 1032, 1152
DpnII	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
EciI	GGCGGA	1 cut(s)	958
Eco130I	CCWWGG	1 cut(s)	1019
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	4 cut(s)	14, 26, 415, 640
Eco57I	CTGAAG	4 cut(s)	657, 810, 941, 1123
EcoO109I	RGGNCCY	3 cut(s)	26, 415, 704
EcoRII	CCWGG	1 cut(s)	1231
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	1019
EcoT22I	ATGCAT	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	1019
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	6 cut(s)	77, 170, 320, 425, 805, 1200
FalI	AAGNNNNNCTT	4 cut(s)	953, 985, 956, 988
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	6 cut(s)	73, 166, 316, 421, 801, 1196
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	2 cut(s)	1006, 1150
Fnu4HI	GCNGC	3 cut(s)	137, 230, 1146
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	137, 230, 1146
FspBI	CTAG	2 cut(s)	728, 1020
GluI	GCNGC	3 cut(s)	137, 230, 1146
GsaI	CCCAGC	1 cut(s)	415
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	588, 706
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	744
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	6 cut(s)	77, 170, 320, 425, 805, 1200
HincII	GTYRAC	1 cut(s)	1213
HindII	GTYRAC	1 cut(s)	1213
HindIII	AAGCTT	1 cut(s)	1333
HinfI	GANTC	2 cut(s)	144, 486
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	9 cut(s)	73, 103, 140, 194, 274, 341, 530, 1133, 1265
Hpy166II	GTNNAC	4 cut(s)	640, 818, 929, 1213
Hpy188I	TCNGA	4 cut(s)	577, 676, 960, 1159
Hpy188III	TCNNGA	3 cut(s)	21, 422, 934
Hpy8I	GTNNAC	4 cut(s)	640, 818, 929, 1213
HpyAV	CCTTC	6 cut(s)	695, 865, 1057, 1147, 1181, 1270
HpyCH4III	ACNGT	4 cut(s)	848, 1165, 1253, 1310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1142
HpyF3I	CTNAG	5 cut(s)	123, 267, 530, 680, 932
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	6 cut(s)	77, 170, 320, 425, 805, 1200
KflI	GGGWCCC	1 cut(s)	415
KpnI	GGTACC	1 cut(s)	434
Ksp22I	TGATCA	2 cut(s)	1006, 1150
Kzo9I	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
LmnI	GCTCC	1 cut(s)	1200
Lsp1109I	GCAGC	3 cut(s)	123, 241, 1157
LweI	GCATC	2 cut(s)	44, 311
MaeI	CTAG	2 cut(s)	728, 1020
MaeIII	GTNAC	6 cut(s)	212, 262, 312, 533, 848, 1121
MalI	GATC	5 cut(s)	375, 951, 1008, 1032, 1152
MboI	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
MflI	RGATCY	1 cut(s)	1030
MhlI	GDGCHC	1 cut(s)	1318
MluCI	AATT	9 cut(s)	4, 208, 363, 604, 619, 688, 754, 908, 1043
MmeI	TCCRAC	1 cut(s)	665
Mph1103I	ATGCAT	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	968
MseI	TTAA	5 cut(s)	324, 741, 798, 923, 1115
MslI	CAYNNNNRTG	3 cut(s)	78, 279, 1311
MspA1I	CMGCKG	1 cut(s)	1148
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	590, 1233
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	1233
MwoI	GCNNNNNNNGC	1 cut(s)	1142
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
NlaIII	CATG	6 cut(s)	77, 170, 320, 425, 805, 1200
NlaIV	GGNNCC	5 cut(s)	416, 417, 432, 835, 1202
NmuCI	GTSAC	4 cut(s)	262, 533, 848, 1121
NsiI	ATGCAT	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	1311
PagI	TCATGA	1 cut(s)	421
PctI	GAATGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	968
PfeI	GAWTC	2 cut(s)	144, 486
PflMI	CCANNNNNTGG	1 cut(s)	1232
PfoI	TCCNGGA	1 cut(s)	1231
PkrI	GCNGC	3 cut(s)	138, 231, 1147
PpuMI	RGGWCCY	2 cut(s)	26, 415
Psp5II	RGGWCCY	2 cut(s)	26, 415
Psp6I	CCWGG	1 cut(s)	1231
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	1231
PspN4I	GGNNCC	5 cut(s)	416, 417, 432, 835, 1202
PspPI	GGNCC	6 cut(s)	14, 26, 415, 587, 640, 704
PspPPI	RGGWCCY	2 cut(s)	26, 415
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	1 cut(s)	1030
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	4 cut(s)	175, 335, 432, 726
RsaNI	GTAC	4 cut(s)	174, 334, 431, 725
RseI	CAYNNNNRTG	3 cut(s)	78, 279, 1311
SaqAI	TTAA	5 cut(s)	324, 741, 798, 923, 1115
SatI	GCNGC	3 cut(s)	137, 230, 1146
Sau3AI	GATC	5 cut(s)	373, 949, 1006, 1030, 1150
Sau96I	GGNCC	6 cut(s)	14, 26, 415, 587, 640, 704
ScrFI	CCNGG	2 cut(s)	590, 1233
SduI	GDGCHC	1 cut(s)	1318
SfaNI	GCATC	2 cut(s)	44, 311
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	4 cut(s)	14, 26, 415, 640
SmiMI	CAYNNNNRTG	3 cut(s)	78, 279, 1311
Sse9I	AATT	9 cut(s)	4, 208, 363, 604, 619, 688, 754, 908, 1043
SsiI	CCGC	2 cut(s)	347, 943
SspI	AATATT	1 cut(s)	988
SspMI	CTAG	2 cut(s)	728, 1020
StyD4I	CCNGG	2 cut(s)	588, 1231
StyI	CCWWGG	1 cut(s)	1019
TaaI	ACNGT	4 cut(s)	848, 1165, 1253, 1310
TaqI	TCGA	2 cut(s)	147, 253
TasI	AATT	9 cut(s)	4, 208, 363, 604, 619, 688, 754, 908, 1043
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	2 cut(s)	144, 486
Tru1I	TTAA	5 cut(s)	324, 741, 798, 923, 1115
Tru9I	TTAA	5 cut(s)	324, 741, 798, 923, 1115
TscAI	CASTG	5 cut(s)	661, 667, 853, 882, 1147
TseFI	GTSAC	4 cut(s)	262, 533, 848, 1121
TseI	GCWGC	3 cut(s)	136, 229, 1145
Tsp45I	GTSAC	4 cut(s)	262, 533, 848, 1121
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	5 cut(s)	661, 667, 853, 882, 1147
Van91I	CCANNNNNTGG	1 cut(s)	1232
VpaK11BI	GGWCC	4 cut(s)	14, 26, 415, 640
XapI	RAATTY	2 cut(s)	619, 1043
XmaJI	CCTAGG	1 cut(s)	1019
XmnI	GAANNNNTTC	1 cut(s)	968
XspI	CTAG	2 cut(s)	728, 1020
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.