Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013348

Physical Location & Seq

Genomic Coordinates Reverse (-)

15426369 .. 15428980

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGGCAATGCTACCGCCGTCAATTACACTACAGGCCTGTTTTTGGGCCTGTGGAACCACTGAATCGTCTAAGCTGACAGCCACTACTCATTATAGAGACAGAAACAAAACTATGCTCGGTTTGGTAAAATTGGACGCAGAGAGAAAGCTAGTTTTTGGAGGATTTGTGCAGAGTTTCACACAAAGTTTGCCGCGGGGTTGTCACTCCAGAGTGCAAGCTACATCAGGAGTTTCTATTGAACCAATGGAGCAGAAGTTTCCCACTGGTACTGAAGAAACGGATAAGGTATCAACTTATCTATTTAGGACAGAAAATGGGGATCTGGTGAATGTGTTTGTTAGAAATAATACTGTCAACTACAGTGTGTATGTTGAAGTTTCATCATTACAATTCTCCAGCAGTGCTGACAGGCTAGTCCTCAGTTGGGGCATGTATAGAGCTGATTCATCCAGTCTCATGCCTTCAGACTTTATCGAAACCCCATTTATAAAGACTTCTTCAGGCAGTTTTACTCTTGAATTGGAGTTTGAGGCTAAACAAACCCCTTTCTATCTCTCATTTATTGTGAAATCTCTGGCAGATGCAAATTTGAGTGGTTTGGAAATAAGAAGCCATAGGAAGACAAATTTCTGTGTCCCAGTTGGTTTTGGTCGAGAAAGTGTGGTTTTATGCTTGTACGATGACCCCACTGCTCAGAAGCCTGCTCTGGAGCTTGATCTAGATCCATATGTCAATCGATCAGGTGACATATGGCATGCGTCATTTGAAAGTGCATGGACTTTTGTGAGCTATGGCTACAGATTTAAGGGGACCCTTCTGAGAAACACAAATAGCTTCGATGAAGGGGATATTCTTCTGGATCCATATGCTAAGGTCATTGATGAATCTATCCCTAATAATAAGGGAACAGGGTCGAAGTTAGTTGGAAGACTATGTGAGGAACCTGTGTTTGACTGGGATGGTGATGTTCGACCTCACCTGCCAATAGAGAAACTGATGGTTTATCGGTTGAACCTGACACGTTTTACTGAGCACAAGTCTAGTAAGCTACCTACTAATGTAGCCGGTACGTTTTCTGGTTTGACAGAAAAGTTGGATCATTTTAAAGATCTGGGTGTGAATGCAATTTTGTTAGAGCCAATTTTCCCATTTGATGAGGAAAAAGGTCCATATTTCCCTTGCCATTTCTTTTCACCAATGAATTGTTTTGGACCATCTGGAGGCCCTATAGCAACTATCAACTCGATGAAAGAGATGGTGAAAGAGTTTCATGCCAATGGAATAGAGGTCCTACTGGAAGTTGTTTTCACCCATACTGCTGCGGGTGAAGTGCTGCAAGGAATCGACACCTCATCTTATTATCATGCAAGGACAGCTAAGGATTTGGAAGCAAGAAATTCTTTGAATTGTAACCATCCCATTGTGCAGCAAATGGTATTAGATAGTCTTCGATACTGGGTGACTGAGTTTCACGTCGATGGTTTTTGTTTCATAAATGCATCGTCTCTGTTACGTGGGGTTAACTGTGAATACCAATCTCGCCCGCCTTTGGTTGAAGCAATTGCTTTTGATCCACTACTGACAAAGACCAAGTTCATTGCAGACTGCTGGGACCCTCATGAAATGGTACCAAAGGAAACTCGTTTTCCTCATTGGAAGAGATGGGCAGAAGTGAATGCAAGATTCTGCAATGATGTAAGAAACTTTTTGAGGGGTGAGGGTCTTCTTAGTGACCTTGCTACACGGCTTTGTGGGAACGGGGACATCTTTTCAGATGGGCGAGGCCCAGCATTCTCTTTCAATTTTATTTCCAGAAATTCTGGTCTTCCTCTTGTGGACCTTGTTAGTTTCAGTGGCAGTGAGTTAGCTTCAGAACTGAGTTGGAATTGTGGGGAAGAAGGGCCTACAAGTAAAATTGCTGTACTAGAAAGACGCCTTAAACAAATCCGTAATTTTCTGTTTATCTTGTATCTTTCATTGGGCGTCCCTGTTCTTAACATGGGAGACGAGTGTGGACAATCTTCAGGTGGTTCCCCTGCATACAGTGACAGAAAATCTTTTGACTGGAATGCAATGGAAACAGGTTTTGCTACTCAAACCACACAATTTATTGCATATTTAAGTTCATTCAGGAGGAGGCGGAGTGATCTTCTTCAGAAGAAGCACTACTTCAAAGAAGAAAATATTGACTGGTATGGGAGTGACCAATCGTTGCCAAGGTGGGAAGACCCTCTGTGCAAATTCCTTGCCATGAGGTTGAAGGCAGACCAAGATGAAGTGGAGAACCAATTGAACAATGAATATGCTGATTTAAGGGGTGACTTGTTTGTAGCCTTCAGTGCAGCTGAACAGTTGGAGACTGTTATTCTACCTCCACCCCCAGAAGGTATGGCATGGAGCCGTTTGGTTGACACGGCTCTCCCATTTCCGGGATTTTTCTCAATTGATGGTGAGCCTGTCATTGAGCAAATGGAGGGTTTATTTTCTTATGCCATGAAGTCTCACAGTTGTGCTCTTTTTGAAGCCAGAAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0010021 GO:0015980 GO:0016052 GO:0016787 GO:0016798 GO:0019156 GO:0032991 GO:0043033 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901575 GO:1901576 GO:1902494 GO:2000896

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 map00500 map01100 map01110

Pfam Domains

Protein Families

Alpha-amylase CBM_48

Protein Analysis

845

Amino Acids

95.18

Weight (kDa)

5.3

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase	PF00128	350 - 441	2e-10	Alpha amylase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03310 AT1G03310
fragaria_vesca	FvH4_2g23950
malus_domestica	MD03G1268800.v1.1 MD11G1289600.v1.1
prunus_persica	Prupe.8G244800_v2.0.a1
pyrus_communis	pycom11g25700
rosa_chinensis	RchiOBHm_Chr6g0291581
rosa_laevigata	RLG00000012105
rosa_multiflora	Rmu_sc0002226.1_g000007
rosa_roxburghii	Rroxscaffold_7G00175950
rosa_rugosa	Rorug06G0220400 Rorug06G0220400
rosa_samantha	Rh6AG332800 Rh6BG339600 Rh6CG346000 Rh6DG333200
rosa_wichuraiana	Rw6G028900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AarI	CACCTGC	1 cut(s)	987
AasI	GACNNNNNNGTC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	987
Acc65I	GGTACC	1 cut(s)	1627
AccB1I	GGYRCC	1 cut(s)	1627
AccII	CGCG	1 cut(s)	193
AciI	CCGC	6 cut(s)	14, 191, 193, 1322, 1544, 2140
AclWI	GGATC	6 cut(s)	327, 716, 854, 867, 1104, 1565
AcsI	RAATTY	5 cut(s)	586, 625, 1396, 1816, 2240
AcuI	CTGAAG	7 cut(s)	291, 447, 483, 1854, 2007, 2138, 2320
AcyI	GRCGYC	2 cut(s)	1933, 1983
AfaI	GTAC	5 cut(s)	268, 677, 1069, 1629, 1923
AfiI	CCNNNNNNNGG	7 cut(s)	42, 424, 1220, 1549, 2384, 2428, 2429
AflIII	ACRYGT	1 cut(s)	1019
AjiI	CACGTC	1 cut(s)	1474
AleI	CACNNNNGTG	1 cut(s)	2508
Alw21I	GWGCWC	2 cut(s)	1035, 2515
Alw26I	GTCTC	6 cut(s)	90, 458, 1509, 1998, 2351, 2505
AlwI	GGATC	6 cut(s)	327, 716, 854, 867, 1104, 1565
AoxI	GGCC	5 cut(s)	33, 45, 1222, 1783, 1901
ApeKI	GCWGC	4 cut(s)	1319, 1333, 1426, 2342
ApoI	RAATTY	5 cut(s)	586, 625, 1396, 1816, 2240
Asp718I	GGTACC	1 cut(s)	1627
AsuC2I	CCSGG	1 cut(s)	2430
AvaII	GGWCC	6 cut(s)	810, 1166, 1211, 1288, 1612, 1837
BamHI	GGATCC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	1627
BarI	GAAGNNNNNNTAC	2 cut(s)	2150, 2182
BbsI	GAAGAC	6 cut(s)	626, 934, 1439, 1715, 1817, 2232
Bbv12I	GWGCWC	2 cut(s)	1035, 2515
BbvI	GCAGC	4 cut(s)	1306, 1320, 1438, 2354
BccI	CCATC	9 cut(s)	953, 991, 1222, 1249, 1422, 1472, 1656, 1769, 2441
BceAI	ACGGC	3 cut(s)	1760, 2385, 2430
BcnI	CCSGG	1 cut(s)	2430
BcoDI	GTCTC	6 cut(s)	90, 458, 1509, 1998, 2351, 2505
BfaI	CTAG	5 cut(s)	149, 413, 719, 1041, 1925
BfmI	CTRYAG	4 cut(s)	29, 358, 796, 1227
BfuAI	ACCTGC	1 cut(s)	987
BglII	AGATCT	1 cut(s)	1108
BisI	GCNGC	5 cut(s)	191, 1320, 1334, 1427, 2343
BlsI	GCNGC	5 cut(s)	192, 1321, 1335, 1428, 2344
Bme1390I	CCNGG	1 cut(s)	2430
Bme18I	GGWCC	6 cut(s)	810, 1166, 1211, 1288, 1612, 1837
BmgBI	CACGTC	1 cut(s)	1474
BmrFI	CCNGG	1 cut(s)	2430
BmrI	ACTGGG	3 cut(s)	632, 964, 1465
BmsI	GCATC	2 cut(s)	571, 1508
BmuI	ACTGGG	3 cut(s)	632, 964, 1465
BpiI	GAAGAC	6 cut(s)	626, 934, 1439, 1715, 1817, 2232
BpmI	CTGGAG	4 cut(s)	190, 379, 728, 1239
Bpu10I	CCTNAGC	2 cut(s)	870, 1377
BpuMI	CCSGG	1 cut(s)	2430
Bsa29I	ATCGAT	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	1514
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	2 cut(s)	1933, 1983
BsaJI	CCNNGG	2 cut(s)	191, 2216
BsaXI	ACNNNNNCTCC	6 cut(s)	150, 180, 239, 269, 2128, 2158
Bsc4I	CCNNNNNNNGG	7 cut(s)	42, 424, 1220, 1549, 2384, 2428, 2429
Bse118I	RCCGGY	1 cut(s)	1064
Bse1I	ACTGG	8 cut(s)	268, 450, 638, 959, 1299, 1460, 2069, 2195
Bse3DI	GCAATG	4 cut(s)	12, 1596, 1696, 2079
Bse8I	GATNNNNATC	1 cut(s)	720
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	191, 2216
BseGI	GGATG	3 cut(s)	446, 964, 1414
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	7 cut(s)	42, 424, 1220, 1549, 2384, 2428, 2429
BseMI	GCAATG	4 cut(s)	12, 1596, 1696, 2079
BseMII	CTCAG	6 cut(s)	433, 707, 809, 1020, 1455, 1868
BseNI	ACTGG	8 cut(s)	268, 450, 638, 959, 1299, 1460, 2069, 2195
BseRI	GAGGAG	1 cut(s)	2149
BseXI	GCAGC	4 cut(s)	1306, 1320, 1438, 2354
BseYI	CCCAGC	2 cut(s)	1608, 1786
BsgI	GTGCAG	3 cut(s)	188, 1445, 2361
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	5 cut(s)	35, 47, 1224, 1785, 1903
BshNI	GGYRCC	1 cut(s)	1627
BshVI	ATCGAT	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	1035, 2515
BsiSI	CCGG	2 cut(s)	1065, 2429
BslFI	GGGAC	5 cut(s)	620, 823, 1625, 1775, 1970
BslI	CCNNNNNNNGG	7 cut(s)	42, 424, 1220, 1549, 2384, 2428, 2429
BsmAI	GTCTC	6 cut(s)	90, 458, 1509, 1998, 2351, 2505
BsmBI	CGTCTC	2 cut(s)	1509, 1998
BsmFI	GGGAC	5 cut(s)	620, 823, 1625, 1775, 1970
BsmI	GAATGC	4 cut(s)	1126, 1681, 1790, 2074
BsnI	GGCC	5 cut(s)	35, 47, 1224, 1785, 1903
Bsp1286I	GDGCHC	2 cut(s)	1035, 2515
Bsp143I	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
BspACI	CCGC	6 cut(s)	14, 191, 193, 1322, 1544, 2140
BspANI	GGCC	5 cut(s)	35, 47, 1224, 1785, 1903
BspCNI	CTCAG	6 cut(s)	432, 706, 810, 1021, 1456, 1869
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	1618
BspMI	ACCTGC	1 cut(s)	987
BspPI	GGATC	6 cut(s)	327, 716, 854, 867, 1104, 1565
BspT107I	GGYRCC	1 cut(s)	1627
BsrDI	GCAATG	4 cut(s)	12, 1596, 1696, 2079
BsrFI	RCCGGY	1 cut(s)	1064
BsrI	ACTGG	8 cut(s)	268, 450, 638, 959, 1299, 1460, 2069, 2195
BssAI	RCCGGY	1 cut(s)	1064
BssECI	CCNNGG	2 cut(s)	191, 2216
BssMI	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
BssNI	GRCGYC	2 cut(s)	1933, 1983
BssT1I	CCWWGG	1 cut(s)	2216
Bst4CI	ACNGT	7 cut(s)	352, 362, 1526, 2045, 2352, 2362, 2507
Bst6I	CTCTTC	1 cut(s)	1652
BstACI	GRCGYC	2 cut(s)	1933, 1983
BstBAI	YACGTR	1 cut(s)	1514
BstC8I	GCNNGC	4 cut(s)	216, 702, 756, 1544
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	3 cut(s)	446, 964, 1414
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	9 cut(s)	322, 718, 724, 740, 862, 1099, 1111, 1573, 2149
BstMAI	GTCTC	6 cut(s)	90, 458, 1509, 1998, 2351, 2505
BstMBI	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
BstMWI	GCNNNNNNNGC	2 cut(s)	1373, 2339
BstNSI	RCATGY	2 cut(s)	433, 758
BstSCI	CCNGG	1 cut(s)	2428
BstSFI	CTRYAG	4 cut(s)	29, 358, 796, 1227
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	4 cut(s)	1306, 1320, 1438, 2354
BstV2I	GAAGAC	6 cut(s)	626, 934, 1439, 1715, 1817, 2232
BstX2I	RGATCY	4 cut(s)	319, 721, 859, 1108
BstYI	RGATCY	4 cut(s)	319, 721, 859, 1108
Bsu15I	ATCGAT	1 cut(s)	736
BsuRI	GGCC	5 cut(s)	35, 47, 1224, 1785, 1903
BsuTUI	ATCGAT	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	1474
BtsCI	GGATG	3 cut(s)	446, 964, 1414
BtsI	GCAGTG	3 cut(s)	406, 687, 1864
BtsIMutI	CAGTG	9 cut(s)	57, 261, 367, 406, 687, 1858, 1864, 2050, 2344
BveI	ACCTGC	1 cut(s)	987
Cac8I	GCNNGC	4 cut(s)	216, 702, 756, 1544
CciI	TCATGA	1 cut(s)	1618
Cfr10I	RCCGGY	1 cut(s)	1064
Cfr42I	CCGCGG	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	736
CseI	GACGC	4 cut(s)	143, 747, 1941, 1972
Csp6I	GTAC	5 cut(s)	267, 676, 1068, 1628, 1922
CviQI	GTAC	5 cut(s)	267, 676, 1068, 1628, 1922
DpnI	GATC	9 cut(s)	321, 717, 723, 739, 861, 1098, 1110, 1572, 2148
DpnII	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
DraI	TTTAAA	1 cut(s)	1105
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	1652
EarI	CTCTTC	1 cut(s)	1652
EciI	GGCGGA	1 cut(s)	2155
Eco130I	CCWWGG	1 cut(s)	2216
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	6 cut(s)	810, 1166, 1211, 1288, 1612, 1837
Eco57I	CTGAAG	7 cut(s)	291, 447, 483, 1854, 2007, 2138, 2320
EcoO109I	RGGNCCY	5 cut(s)	810, 1223, 1288, 1612, 1901
EcoT14I	CCWWGG	1 cut(s)	2216
EcoT22I	ATGCAT	1 cut(s)	1501
ErhI	CCWWGG	1 cut(s)	2216
Esp3I	CGTCTC	2 cut(s)	1509, 1998
FalI	AAGNNNNNCTT	4 cut(s)	1384, 1416, 2153, 2185
FaqI	GGGAC	5 cut(s)	620, 823, 1625, 1775, 1970
FauI	CCCGC	3 cut(s)	186, 1315, 1551
FauNDI	CATATG	3 cut(s)	727, 749, 865
Fnu4HI	GCNGC	5 cut(s)	191, 1320, 1334, 1427, 2343
FokI	GGATG	3 cut(s)	433, 971, 1401
Fsp4HI	GCNGC	5 cut(s)	191, 1320, 1334, 1427, 2343
FspBI	CTAG	5 cut(s)	149, 413, 719, 1041, 1925
GluI	GCNGC	5 cut(s)	191, 1320, 1334, 1427, 2343
GsaI	CCCAGC	2 cut(s)	1612, 1790
GsuI	CTGGAG	4 cut(s)	190, 379, 728, 1239
HaeIII	GGCC	5 cut(s)	35, 47, 1224, 1785, 1903
HapII	CCGG	2 cut(s)	1065, 2429
HgaI	GACGC	4 cut(s)	143, 747, 1941, 1972
Hin1I	GRCGYC	2 cut(s)	1933, 1983
HincII	GTYRAC	3 cut(s)	355, 1522, 2410
HindII	GTYRAC	3 cut(s)	355, 1522, 2410
HinfI	GANTC	5 cut(s)	62, 443, 884, 1341, 1683
HpaI	GTTAAC	1 cut(s)	1522
HpaII	CCGG	2 cut(s)	1065, 2429
Hpy166II	GTNNAC	5 cut(s)	355, 1522, 1837, 2015, 2410
Hpy188I	TCNGA	6 cut(s)	466, 696, 819, 1774, 1873, 2157
Hpy8I	GTNNAC	5 cut(s)	355, 1522, 1837, 2015, 2410
Hpy99I	CGWCG	1 cut(s)	1478
HpyAV	CCTTC	7 cut(s)	471, 824, 836, 1892, 2254, 2344, 2378
HpyCH4III	ACNGT	7 cut(s)	352, 362, 1526, 2045, 2352, 2362, 2507
HpyCH4IV	ACGT	4 cut(s)	1021, 1070, 1473, 1513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1373, 2339
HpySE526I	ACGT	4 cut(s)	1021, 1070, 1473, 1513
Hsp92I	GRCGYC	2 cut(s)	1933, 1983
KflI	GGGWCCC	2 cut(s)	810, 1612
KpnI	GGTACC	1 cut(s)	1631
KspAI	GTTAAC	1 cut(s)	1522
KspI	CCGCGG	1 cut(s)	194
Kzo9I	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
LmnI	GCTCC	3 cut(s)	247, 709, 2397
Lsp1109I	GCAGC	4 cut(s)	1306, 1320, 1438, 2354
LweI	GCATC	2 cut(s)	571, 1508
MaeI	CTAG	5 cut(s)	149, 413, 719, 1041, 1925
MaeII	ACGT	4 cut(s)	1021, 1070, 1473, 1513
MaeIII	GTNAC	9 cut(s)	200, 743, 1409, 1459, 1509, 1730, 2045, 2201, 2318
MalI	GATC	9 cut(s)	321, 717, 723, 739, 861, 1098, 1110, 1572, 2148
MboI	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
MfeI	CAATTG	3 cut(s)	1560, 2288, 2442
MflI	RGATCY	4 cut(s)	319, 721, 859, 1108
MhlI	GDGCHC	2 cut(s)	1035, 2515
MmeI	TCCRAC	4 cut(s)	904, 1074, 1862, 2334
Mph1103I	ATGCAT	1 cut(s)	1501
MseI	TTAA	7 cut(s)	804, 1104, 1521, 1938, 1995, 2120, 2312
MslI	CAYNNNNRTG	3 cut(s)	1275, 1476, 2508
MspA1I	CMGCKG	2 cut(s)	193, 2345
MspI	CCGG	2 cut(s)	1065, 2429
MspR9I	CCNGG	1 cut(s)	2430
MunI	CAATTG	3 cut(s)	1560, 2288, 2442
Mva1269I	GAATGC	4 cut(s)	1126, 1681, 1790, 2074
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	1373, 2339
NciI	CCSGG	1 cut(s)	2430
NdeI	CATATG	3 cut(s)	727, 749, 865
NdeII	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
NmuCI	GTSAC	7 cut(s)	200, 743, 1459, 1730, 2045, 2201, 2318
NsiI	ATGCAT	1 cut(s)	1501
NspI	RCATGY	2 cut(s)	433, 758
OliI	CACNNNNGTG	1 cut(s)	2508
PaeI	GCATGC	1 cut(s)	758
PagI	TCATGA	1 cut(s)	1618
PaqCI	CACCTGC	1 cut(s)	987
PceI	AGGCCT	1 cut(s)	35
PctI	GAATGC	4 cut(s)	1126, 1681, 1790, 2074
PfeI	GAWTC	5 cut(s)	62, 443, 884, 1341, 1683
PfoI	TCCNGGA	1 cut(s)	2428
PkrI	GCNGC	5 cut(s)	192, 1321, 1335, 1428, 2344
Ppu21I	YACGTR	1 cut(s)	1514
PpuMI	RGGWCCY	3 cut(s)	810, 1288, 1612
PsiI	TTATAA	1 cut(s)	488
Psp5II	RGGWCCY	3 cut(s)	810, 1288, 1612
PspFI	CCCAGC	2 cut(s)	1608, 1786
PspPPI	RGGWCCY	3 cut(s)	810, 1288, 1612
PsuI	RGATCY	4 cut(s)	319, 721, 859, 1108
PvuII	CAGCTG	1 cut(s)	2345
RsaI	GTAC	5 cut(s)	268, 677, 1069, 1629, 1923
RsaNI	GTAC	5 cut(s)	267, 676, 1068, 1628, 1922
RseI	CAYNNNNRTG	3 cut(s)	1275, 1476, 2508
SacII	CCGCGG	1 cut(s)	194
SaqAI	TTAA	7 cut(s)	804, 1104, 1521, 1938, 1995, 2120, 2312
SatI	GCNGC	5 cut(s)	191, 1320, 1334, 1427, 2343
Sau3AI	GATC	9 cut(s)	319, 715, 721, 737, 859, 1096, 1108, 1570, 2146
ScrFI	CCNGG	1 cut(s)	2430
SduI	GDGCHC	2 cut(s)	1035, 2515
SfaNI	GCATC	2 cut(s)	571, 1508
SfcI	CTRYAG	4 cut(s)	29, 358, 796, 1227
Sfr303I	CCGCGG	1 cut(s)	194
SgrBI	CCGCGG	1 cut(s)	194
SinI	GGWCC	6 cut(s)	810, 1166, 1211, 1288, 1612, 1837
SmiMI	CAYNNNNRTG	3 cut(s)	1275, 1476, 2508
SphI	GCATGC	1 cut(s)	758
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	6 cut(s)	14, 191, 193, 1322, 1544, 2140
SspI	AATATT	1 cut(s)	2185
SspMI	CTAG	5 cut(s)	149, 413, 719, 1041, 1925
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	2428
StyI	CCWWGG	1 cut(s)	2216
TaaI	ACNGT	7 cut(s)	352, 362, 1526, 2045, 2352, 2362, 2507
TaiI	ACGT	4 cut(s)	1024, 1073, 1476, 1516
TatI	WGTACW	1 cut(s)	1921
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	5 cut(s)	62, 443, 884, 1341, 1683
Tru1I	TTAA	7 cut(s)	804, 1104, 1521, 1938, 1995, 2120, 2312
Tru9I	TTAA	7 cut(s)	804, 1104, 1521, 1938, 1995, 2120, 2312
TscAI	CASTG	9 cut(s)	64, 268, 367, 406, 694, 1858, 1864, 2050, 2344
TseFI	GTSAC	7 cut(s)	200, 743, 1459, 1730, 2045, 2201, 2318
TseI	GCWGC	4 cut(s)	1319, 1333, 1426, 2342
Tsp45I	GTSAC	7 cut(s)	200, 743, 1459, 1730, 2045, 2201, 2318
TspGWI	ACGGA	2 cut(s)	293, 1937
TspRI	CASTG	9 cut(s)	64, 268, 367, 406, 694, 1858, 1864, 2050, 2344
VpaK11BI	GGWCC	6 cut(s)	810, 1166, 1211, 1288, 1612, 1837
XapI	RAATTY	5 cut(s)	586, 625, 1396, 1816, 2240
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	2 cut(s)	433, 758
XspI	CTAG	5 cut(s)	149, 413, 719, 1041, 1925
Zsp2I	ATGCAT	1 cut(s)	1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.