FvH4_2g24120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017990
Physical Location & Seq
Forward (+)
19710164 .. 19711028
865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24120.t1

Sequence Viewer

Length: 666 bp
ATGCAGGAGAAGAGGAAACAATGGCAGCCTCTTGGCATTTGCCACAGGCTCATCGCCTTCATCCTGAACAGCATCATTGCAAGAAGCCTTGTTAAGCACGAAACCATAACCAGCCCTCATCCAAAGCCTCAAGGTTCGAGCAATGGAGTGGTTTCTATGGAAGACCAACAACCCCTAGTCCCAAACAGGCCTAACGGAGTTGAAAGCGTCTACCTTCAACAGGCTCAGCATACACCAGACGACAATTCAGGTTTTGAGATCCAAGTTCACTACAAGCAAATAGATGATGATGATTCAAAGATGAGTAATGCTGCTGGTAGCCACAAATTTTCTTCGAGTAGGAGTTTAGAAGAGGTGAAACCAATTTTCACAAGCGTATCGCAAGCTAAGGACCCGAAAAGGAGTTTAAGCATTGCACATGTAGCGGGGTTGGAGAAAGAGAAGGACAATAAGAAGAAAGGAATAATGCTAATGAGCAAAGAAGATGCTACACTAGCAATGGTGGGTGAAGAAGATGAGAGTTCAAAGCGTCCTACTTTGAGGCGAACAAGACCACTTTTTTCTGTTGCACCAAATATAAATGAAAAATCAGACGAATTCATTCGGAGTAGAAAGGAAGCTATGAGAAGAAGCCAAAGCCTTGATGAGCTACCTAGGACATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.95

Weight (kDa)

9.12

Isoelectric Point (pI)

71.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017990)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24120
prunus_persica Prupe.8G247400_v2.0.a1
pyrus_communis pycom11g25860
rosa_chinensis RchiOBHm_Chr6g0291921
rosa_laevigata RLG00000012078
rosa_roxburghii Rroxscaffold_7G00175620
rosa_rugosa Rorug06G0221800
rosa_samantha Rh6AG335400 Rh6BG342800 Rh6CG349000 Rh6DG335700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 210
AciI CCGC 1 cut(s) 425
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 326, 596
AfiI CCNNNNNNNGG 1 cut(s) 220
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 4 cut(s) 203, 218, 297, 525
AluBI AGCT 3 cut(s) 386, 620, 649
AluI AGCT 3 cut(s) 386, 620, 649
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 25, 311
ApoI RAATTY 2 cut(s) 326, 596
Asp700I GAANNNNTTC 1 cut(s) 600
AspA2I CCTAGG 1 cut(s) 653
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 367, 518
AvaII GGWCC 1 cut(s) 391
AvrII CCTAGG 1 cut(s) 653
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 37, 298
BfaI CTAG 3 cut(s) 176, 494, 654
BisI GCNGC 2 cut(s) 26, 312
BlnI CCTAGG 1 cut(s) 653
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 2 cut(s) 27, 313
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 393
BmsI GCATC 2 cut(s) 81, 475
BpiI GAAGAC 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 653
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse3DI GCAATG 4 cut(s) 75, 148, 411, 504
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 60, 118
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 4 cut(s) 75, 148, 411, 504
BseMII CTCAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 37, 298
BshFI GGCC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 1 cut(s) 425
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 1 cut(s) 253
BsrDI GCAATG 4 cut(s) 75, 148, 411, 504
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 653
Bst6I CTCTTC 2 cut(s) 5, 345
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 225, 387
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 60, 118
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 2 cut(s) 422, 494
BstNSI RCATGY 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 37, 298
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 1 cut(s) 190
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 60, 118
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 2 cut(s) 196, 518
CviAII CATG 1 cut(s) 419
DdeI CTNAG 2 cut(s) 225, 387
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 5, 345
EarI CTCTTC 2 cut(s) 5, 345
Eco130I CCWWGG 1 cut(s) 653
Eco147I AGGCCT 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 391
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 596
EcoT14I CCWWGG 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 1 cut(s) 422
FaiI YATR 6 cut(s) 107, 158, 231, 420, 578, 623
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 418
FauI CCCGC 1 cut(s) 418
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 26, 312
FokI GGATG 2 cut(s) 47, 105
Fsp4HI GCNGC 2 cut(s) 26, 312
FspBI CTAG 3 cut(s) 176, 494, 654
GluI GCNGC 2 cut(s) 26, 312
HaeIII GGCC 1 cut(s) 190
HgaI GACGC 2 cut(s) 196, 518
Hin1II CATG 1 cut(s) 422
HinfI GANTC 1 cut(s) 293
HphI GGTGA 2 cut(s) 367, 518
Hpy166II GTNNAC 2 cut(s) 211, 268
Hpy188I TCNGA 2 cut(s) 592, 606
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 211, 268
HpyAV CCTTC 3 cut(s) 67, 224, 436
HpyCH4V TGCA 4 cut(s) 4, 80, 416, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 494
HpyF3I CTNAG 2 cut(s) 225, 387
Hsp92II CATG 1 cut(s) 422
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 8 cut(s) 31, 77, 124, 172, 206, 234, 249, 300
Lsp1109I GCAGC 2 cut(s) 37, 298
LweI GCATC 2 cut(s) 81, 475
MaeI CTAG 3 cut(s) 176, 494, 654
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 9 cut(s) 22, 173, 324, 362, 466, 494, 521, 524, 639
MflI RGATCY 1 cut(s) 258
MluCI AATT 4 cut(s) 244, 326, 363, 596
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 6 cut(s) 6, 39, 126, 138, 346, 534
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 2 cut(s) 93, 407
MwoI GCNNNNNNNGC 2 cut(s) 422, 494
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 1 cut(s) 393
NspI RCATGY 1 cut(s) 422
PceI AGGCCT 1 cut(s) 190
PciI ACATGT 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 27, 313
PpuMI RGGWCCY 1 cut(s) 391
PscI ACATGT 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 391
PsuI RGATCY 1 cut(s) 258
SaqAI TTAA 2 cut(s) 93, 407
SatI GCNGC 2 cut(s) 26, 312
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 391
SetI ASST 8 cut(s) 136, 216, 253, 357, 388, 622, 651, 655
SfaNI GCATC 2 cut(s) 81, 475
SinI GGWCC 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 4 cut(s) 244, 326, 363, 596
SseBI AGGCCT 1 cut(s) 190
SsiI CCGC 1 cut(s) 425
SspMI CTAG 3 cut(s) 176, 494, 654
StuI AGGCCT 1 cut(s) 190
StyI CCWWGG 1 cut(s) 653
TaqI TCGA 2 cut(s) 137, 335
TasI AATT 4 cut(s) 244, 326, 363, 596
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 93, 407
Tru9I TTAA 2 cut(s) 93, 407
TseI GCWGC 2 cut(s) 25, 311
TspDTI ATGAA 3 cut(s) 49, 589, 597
TspGWI ACGGA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 391
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 2 cut(s) 326, 596
XceI RCATGY 1 cut(s) 422
XmaJI CCTAGG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 3 cut(s) 176, 494, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.