RLG00000012078

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017990
Physical Location & Seq
Reverse (-)
15026840 .. 15027505
666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012078

Sequence Viewer

Length: 666 bp
ATGCAGGAGAAGAGAAAACACTGGCAGCCTCTTGGCATTTGCCACAGGCTCTTCACCTTCATCATGAACAGCCTCATTGCTAGAAGGCTTGTCAAGCACGTAACGATAACCAGCCATCATCCAACGCCTCAAGGTTCAAGCAATGAAGTGGTTTTTATGGAAGATCAACAACCCCTTGTGCCAAACAGGCCTAATGGAGTGGAGAGCATATACATTCAACAGGCTCAGCATACACCAGAAGACAATTCGGGTTTTGAGATCCAAGTTCACTACAAACAGACAGATGATGGTGATTCAAAGATGAGGAATTCTTCCGATAGCCACAAATTGTCTTCGAGTAAGAGTTTACAAGAGTTGAAGCCTATTGTCACAGGTGTATCGCATGCGCAAGCTAAGGACCCGGAAAAGAGTTTAAGCATTGCAGATGGAGTGGGGTTGCAGAAAGAGAAGGACAATAAGAAGAAAGGTATAATGCTAATGAGTAATGAAAAATTTACACTAGCAATGGTGGGTGAAGAAGATGAGAGATCAAAGCTTCCTTTGATGCGTGCAAGGTCACTTTTTTATGTTGCACCAAATATAAATGAAAAATCAGACGAATTCATTCGGAGTAGAAAGGAAGCTATGAGAAGAAGCCAAAGCCTTGAGCTGTCCAAAACATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.23

Weight (kDa)

9.21

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017990)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24120
prunus_persica Prupe.8G247400_v2.0.a1
pyrus_communis pycom11g25860
rosa_chinensis RchiOBHm_Chr6g0291921
rosa_laevigata RLG00000012078
rosa_roxburghii Rroxscaffold_7G00175620
rosa_rugosa Rorug06G0221800
rosa_samantha Rh6AG335400 Rh6BG342800 Rh6CG349000 Rh6DG335700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 387
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 3 cut(s) 307, 491, 599
AgsI TTSAA 4 cut(s) 138, 218, 297, 358
AluBI AGCT 4 cut(s) 392, 535, 623, 649
AluI AGCT 4 cut(s) 392, 535, 623, 649
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 3 cut(s) 307, 491, 599
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 397
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 3 cut(s) 46, 302, 524
AvaII GGWCC 1 cut(s) 397
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BbsI GAAGAC 2 cut(s) 246, 324
BbvI GCAGC 1 cut(s) 37
BccI CCATC 3 cut(s) 123, 281, 419
BcnI CCSGG 1 cut(s) 401
BfaI CTAG 2 cut(s) 81, 500
BglI GCCNNNNNGGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 246, 324
Bpu10I CCTNAGC 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 114, 665
BpuMI CCSGG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 4 cut(s) 75, 148, 417, 510
BseGI GGATG 1 cut(s) 118
BseMI GCAATG 4 cut(s) 75, 148, 417, 510
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 401
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 3 cut(s) 163, 258, 527
Bsp1720I GCTNAGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 56
BsrDI GCAATG 4 cut(s) 75, 148, 417, 510
BsrI ACTGG 1 cut(s) 26
BssMI GATC 3 cut(s) 163, 258, 527
Bst6I CTCTTC 2 cut(s) 5, 56
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 384, 390, 549
BstDEI CTNAG 2 cut(s) 225, 393
BstF5I GGATG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 3 cut(s) 166, 261, 530
BstMBI GATC 3 cut(s) 163, 258, 527
BstMWI GCNNNNNNNGC 2 cut(s) 94, 187
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 2 cut(s) 246, 324
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 384, 390, 549
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 397
CviAII CATG 2 cut(s) 64, 383
DdeI CTNAG 2 cut(s) 225, 393
DpnI GATC 3 cut(s) 165, 260, 529
DpnII GATC 3 cut(s) 163, 258, 527
Eam1104I CTCTTC 2 cut(s) 5, 56
EarI CTCTTC 2 cut(s) 5, 56
Eco147I AGGCCT 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 2 cut(s) 307, 599
FaeI CATG 2 cut(s) 67, 386
FatI CATG 2 cut(s) 63, 382
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 2 cut(s) 81, 500
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 401
HhaI GCGC 1 cut(s) 388
Hin1II CATG 2 cut(s) 67, 386
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 401
HphI GGTGA 3 cut(s) 46, 302, 524
Hpy166II GTNNAC 2 cut(s) 268, 347
Hpy188I TCNGA 3 cut(s) 316, 595, 609
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 268, 347
HpyAV CCTTC 3 cut(s) 67, 78, 442
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 5 cut(s) 4, 422, 439, 551, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 187
HpyF3I CTNAG 2 cut(s) 225, 393
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 67, 386
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 3 cut(s) 163, 258, 527
LguI GCTCTTC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 7, 31, 124, 172, 206, 249, 357, 414
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 534
MaeI CTAG 2 cut(s) 81, 500
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 100, 367, 555
MalI GATC 3 cut(s) 165, 260, 529
MboI GATC 3 cut(s) 163, 258, 527
MflI RGATCY 1 cut(s) 258
MluCI AATT 5 cut(s) 244, 307, 326, 491, 599
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 4 cut(s) 39, 83, 138, 297
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 1 cut(s) 413
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 94, 187
NciI CCSGG 1 cut(s) 401
NdeII GATC 3 cut(s) 163, 258, 527
NlaIII CATG 2 cut(s) 67, 386
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 2 cut(s) 367, 555
NsbI TGCGCA 1 cut(s) 387
NspI RCATGY 1 cut(s) 386
PaeI GCATGC 1 cut(s) 386
PagI TCATGA 1 cut(s) 63
PceI AGGCCT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 27
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 397
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 3 cut(s) 163, 258, 527
Sau96I GGNCC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 1 cut(s) 534
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 2 cut(s) 129, 644
SmoI CTYRAG 2 cut(s) 129, 644
SphI GCATGC 1 cut(s) 386
Sse9I AATT 5 cut(s) 244, 307, 326, 491, 599
SseBI AGGCCT 1 cut(s) 190
SspMI CTAG 2 cut(s) 81, 500
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 399
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 335
TasI AATT 5 cut(s) 244, 307, 326, 491, 599
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 2 cut(s) 367, 555
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 2 cut(s) 367, 555
TspDTI ATGAA 6 cut(s) 49, 80, 159, 501, 592, 600
TspRI CASTG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 3 cut(s) 307, 491, 599
XceI RCATGY 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 2 cut(s) 81, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.