Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017990

Physical Location & Seq

Genomic Coordinates Forward (+)

53615952 .. 53616975

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG335400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCAGGAGAAGAGAAAACACTGGCAGCCTCTTGGCATTTGCCATAGGCTCTTCACCTTCATCATGAACAGCCTCAATGCTAGAAGGCTTATCAAGCACGTAACGATAACCAGCCATCATCCAACCCCTCAAGGTTCAAGCAATGAAGTGGTTTTTGTGGAAGACCAACAACCCCTTGTGCCAAACAGGCCTAATGGAGTGGAGAGCATATACATTCAACAGGCTCAGCATACACCAGAAGACAATTCGGGTTTTGAGATCCAAGTTCACTACAAGCAGACAGATGATGATGATTCAAAGATGAGGAATTCTTCGGATAGCCACAAATTGTTTTCGAGTAAGAGTTTACAAGAGTTGAAGCCTATTGTCACAGGTGTATCGCAAGCTAAGGACCCGGAAAAGAGTTTAAGCATTGCCGATGCATTGGGGTTGGAGAAAGAGAAGGACAATCAGAAGCAAGGTATAATGCTAATGAGTAATGAAAAATTTACACTAGCAATGGTGGGTGAAGAAGATGAGAGATCAAAGCTTCCTTTGATGCGTGCAAGGCCACTTTTTTATGTTGCACCAAATATAAATGAAAAATCAGACGAATTCATTCGGAGTAGAAAGGAAGCTATGAGAAGGAGCCAAAGCCTCGAACTGCCCAAAACATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

25.17

Weight (kDa)

7.87

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017990)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24120
prunus_persica	Prupe.8G247400_v2.0.a1
pyrus_communis	pycom11g25860
rosa_chinensis	RchiOBHm_Chr6g0291921
rosa_laevigata	RLG00000012078
rosa_roxburghii	Rroxscaffold_7G00175620
rosa_rugosa	Rorug06G0221800
rosa_samantha	Rh6AG335400 Rh6BG342800 Rh6CG349000 Rh6DG335700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	3 cut(s)	307, 485, 593
AgsI	TTSAA	4 cut(s)	138, 218, 297, 358
AluBI	AGCT	3 cut(s)	386, 529, 617
AluI	AGCT	3 cut(s)	386, 529, 617
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	188, 548
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	3 cut(s)	307, 485, 593
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	391
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	46, 518
AvaII	GGWCC	1 cut(s)	391
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BbsI	GAAGAC	2 cut(s)	168, 246
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	395
BfaI	CTAG	2 cut(s)	81, 494
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	391
BmiI	GGNNCC	2 cut(s)	393, 629
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	409, 528
BpiI	GAAGAC	2 cut(s)	168, 246
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	3 cut(s)	148, 411, 504
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	3 cut(s)	148, 411, 504
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	190, 550
BsiSI	CCGG	1 cut(s)	395
BsnI	GGCC	2 cut(s)	190, 550
Bsp143I	GATC	2 cut(s)	258, 521
Bsp1720I	GCTNAGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	190, 550
BspCNI	CTCAG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	393, 629
BspPI	GGATC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	56
BsrDI	GCAATG	3 cut(s)	148, 411, 504
BsrI	ACTGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	258, 521
Bst6I	CTCTTC	2 cut(s)	5, 56
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	384, 543
BstDEI	CTNAG	2 cut(s)	225, 387
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	261, 524
BstMBI	GATC	2 cut(s)	258, 521
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 187, 547
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	2 cut(s)	168, 246
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	190, 550
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	384, 543
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	391
CviAII	CATG	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	225, 387
DpnI	GATC	2 cut(s)	260, 523
DpnII	GATC	2 cut(s)	258, 521
Eam1104I	CTCTTC	2 cut(s)	5, 56
EarI	CTCTTC	2 cut(s)	5, 56
Eco147I	AGGCCT	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRI	GAATTC	2 cut(s)	307, 593
EcoT22I	ATGCAT	1 cut(s)	424
FaeI	CATG	1 cut(s)	67
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	81, 494
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	190, 550
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	46, 518
Hpy166II	GTNNAC	2 cut(s)	268, 347
Hpy188I	TCNGA	4 cut(s)	316, 453, 589, 603
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	268, 347
HpyAV	CCTTC	4 cut(s)	67, 78, 436, 618
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	4, 422, 545, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 187, 547
HpyF3I	CTNAG	2 cut(s)	225, 387
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	258, 521
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	627
LpnPI	CCDG	7 cut(s)	7, 124, 172, 206, 249, 357, 408
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	409, 528
MaeI	CTAG	2 cut(s)	81, 494
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	100, 367
MalI	GATC	2 cut(s)	260, 523
MboI	GATC	2 cut(s)	258, 521
MboII	GAAGA	7 cut(s)	22, 43, 173, 251, 303, 521, 524
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	5 cut(s)	244, 307, 326, 485, 593
MmeI	TCCRAC	2 cut(s)	146, 411
MnlI	CCTC	5 cut(s)	39, 83, 138, 297, 647
Mph1103I	ATGCAT	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	1 cut(s)	407
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	94, 187, 547
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	258, 521
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	393, 629
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	424
PagI	TCATGA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	391
Psp5II	RGGWCCY	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	393, 629
PspPI	GGNCC	1 cut(s)	391
PspPPI	RGGWCCY	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	258, 521
Sau96I	GGNCC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	8 cut(s)	59, 102, 136, 376, 388, 463, 531, 619
SfaNI	GCATC	2 cut(s)	409, 528
SinI	GGWCC	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	5 cut(s)	244, 307, 326, 485, 593
SseBI	AGGCCT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	81, 494
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	393
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	335, 639
TasI	AATT	5 cut(s)	244, 307, 326, 485, 593
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	6 cut(s)	49, 80, 159, 495, 586, 594
TspRI	CASTG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	391
XapI	RAATTY	3 cut(s)	307, 485, 593
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	81, 494
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.