Rorug06G0221800

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000216
Physical Location & Seq
Forward (+)
35486683 .. 35493836
7154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0221800.1

Sequence Viewer

Length: 906 bp
ATGGAGAGTGAAGTGATCACCTCTCCGACTCGACCCAGATGGCGAAAGGTTGCATATGGAGGCATGCAACCGGGGTTTGATGACAATCACACGGACGATTCATTCCTCGAAGAAATGGTGATGAATGCCAATGTTGTTAAAAGGGACATTCTCAAAGTCATGCTGGATTCTGTTTCGATATCCCAGTACCTCTGCATTGTTGCTCTTGTGGGTTTGGTCTGGACCTACACCCTCAGATCAATCCTCAATGAAAACTCACTCTTGCTTCTTGATGTCACTCTTCTCGGTTTGGGATTCCTTGTTCTGCTTTTAACTAAAGAAATGCTTTCATTCAATCTGTTCCTGCGTTACTTGCTCAACATTTCCTTTTTCATTAGTGGTTTGTATGTTTTAGCTCCAATATACCAAACACTCACCACTTCCATTAGCTCCAATTCCATTTGGGCCGTTACGGTTGCACTACTTGTCCTACATTTATTCCTCCATGACTACAATGGATCCACCGTCAGGGCTCCCGGGGCTCTGCACAATCCCACATTGACAAGTTGCATCTCTTTGAATGCTTCTGTCGTGGCCTCGGTGTTCATCGCTTCGTGCCTCCGGTCCAGGCTGCTTGTTTTCGCAATCATGCTTTTCTCTTTGCAAGTGTTCCTTTTCGCTCCTTTGGTTACTTACTGCATTAAGAAGTATTCCTTTCGTTTGCACCTGTGGTTTTCTTTTGGGCTGATGATTGCGACATTGGCTTTTGTTTATACCCTGCATTTGTTACTTTTTGTGATGTTGTTAGGATTGTTGATTTTTGTCACTGTGGTTTGTCCATATTGGCTGATCCGGATGCAAGAATACAAGTTTGAAATAGCTGGTCCTTGGGATGAGGCTAAGCTTTGCTTTGATATCACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

301

Amino Acids

34.13

Weight (kDa)

6.58

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GPI2 PF06432 14 - 291 4.4e-72 Phosphatidylinositol N-acetylglucosaminyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 831
AclWI GGATC 3 cut(s) 492, 505, 823
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 507
AgsI TTSAA 3 cut(s) 334, 559, 854
AjnI CCWGG 1 cut(s) 605
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 4 cut(s) 395, 429, 860, 883
AluI AGCT 4 cut(s) 395, 429, 860, 883
AlwI GGATC 3 cut(s) 492, 505, 823
Ama87I CYCGRG 1 cut(s) 515
Aor13HI TCCGGA 1 cut(s) 831
AoxI GGCC 2 cut(s) 444, 573
ApeKI GCWGC 1 cut(s) 610
AspS9I GGNCC 4 cut(s) 222, 444, 603, 863
AsuC2I CCSGG 3 cut(s) 72, 516, 517
AsuHPI GGTGA 3 cut(s) 10, 130, 406
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 3 cut(s) 222, 603, 863
BamHI GGATCC 1 cut(s) 497
BanII GRGCYC 2 cut(s) 514, 523
BbvI GCAGC 1 cut(s) 597
BccI CCATC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 607
BclI TGATCA 1 cut(s) 15
BcnI CCSGG 3 cut(s) 72, 516, 517
BisI GCNGC 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 1 cut(s) 612
Bme1390I CCNGG 4 cut(s) 72, 516, 517, 607
Bme18I GGWCC 3 cut(s) 222, 603, 863
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 4 cut(s) 222, 444, 603, 863
BmiI GGNNCC 2 cut(s) 499, 513
BmrFI CCNGG 4 cut(s) 72, 516, 517, 607
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 558, 825
BmuI ACTGGG 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 879
BpuMI CCSGG 3 cut(s) 72, 516, 517
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 5 cut(s) 71, 515, 516, 576, 866
BsaWI WCCGGW 2 cut(s) 600, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse1I ACTGG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 84
BseAI TCCGGA 1 cut(s) 831
BseBI CCWGG 1 cut(s) 607
BseDI CCNNGG 5 cut(s) 71, 515, 516, 576, 866
BseGI GGATG 2 cut(s) 840, 877
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 2 cut(s) 446, 575
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 4 cut(s) 71, 516, 601, 832
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 507
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 2 cut(s) 130, 565
BsnI GGCC 2 cut(s) 446, 575
BsoBI CYCGRG 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 514, 523
Bsp13I TCCGGA 1 cut(s) 831
Bsp143I GATC 4 cut(s) 15, 236, 497, 828
Bsp1720I GCTNAGC 1 cut(s) 879
BspANI GGCC 2 cut(s) 446, 575
BspCNI CTCAG 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 499, 513
BspPI GGATC 3 cut(s) 492, 505, 823
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 5 cut(s) 71, 515, 516, 576, 866
BssMI GATC 4 cut(s) 15, 236, 497, 828
BssT1I CCWWGG 1 cut(s) 866
Bst2UI CCWGG 1 cut(s) 607
Bst4CI ACNGT 3 cut(s) 454, 505, 808
Bst6I CTCTTC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 233, 879
BstF5I GGATG 2 cut(s) 840, 877
BstKTI GATC 4 cut(s) 18, 239, 500, 831
BstMBI GATC 4 cut(s) 15, 236, 497, 828
BstMWI GCNNNNNNNGC 3 cut(s) 352, 518, 740
BstNI CCWGG 1 cut(s) 607
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 4 cut(s) 70, 514, 515, 605
BstV1I GCAGC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BsuRI GGCC 2 cut(s) 446, 575
BtgZI GCGATG 1 cut(s) 571
BtsCI GGATG 2 cut(s) 840, 877
BtsIMutI CAGTG 2 cut(s) 804, 897
Cac8I GCNNGC 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 222, 444, 603, 863
Cfr9I CCCGGG 1 cut(s) 515
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 64, 160, 485, 628
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 233, 879
DpnI GATC 4 cut(s) 17, 238, 499, 830
DpnII GATC 4 cut(s) 15, 236, 497, 828
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 866
Eco24I GRGCYC 2 cut(s) 514, 523
Eco32I GATATC 2 cut(s) 180, 895
Eco47I GGWCC 3 cut(s) 222, 603, 863
Eco88I CYCGRG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 605
EcoRV GATATC 2 cut(s) 180, 895
EcoT14I CCWWGG 1 cut(s) 866
EcoT38I GRGCYC 2 cut(s) 514, 523
ErhI CCWWGG 1 cut(s) 866
FaeI CATG 4 cut(s) 67, 163, 488, 631
FalI AAGNNNNNCTT 8 cut(s) 309, 341, 636, 668, 677, 709, 872, 904
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 63, 159, 484, 627
FauNDI CATATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 611
FokI GGATG 2 cut(s) 847, 884
FriOI GRGCYC 2 cut(s) 514, 523
Fsp4HI GCNGC 1 cut(s) 611
GluI GCNGC 1 cut(s) 611
HaeIII GGCC 2 cut(s) 446, 575
HapII CCGG 4 cut(s) 71, 516, 601, 832
Hin1II CATG 4 cut(s) 67, 163, 488, 631
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 4 cut(s) 28, 98, 167, 294
HpaII CCGG 4 cut(s) 71, 516, 601, 832
HphI GGTGA 3 cut(s) 10, 130, 406
Hpy188I TCNGA 2 cut(s) 27, 236
Hpy188III TCNNGA 3 cut(s) 220, 269, 832
HpyCH4III ACNGT 3 cut(s) 454, 505, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 518, 740
HpyF3I CTNAG 2 cut(s) 233, 879
Hsp92II CATG 4 cut(s) 67, 163, 488, 631
Kpn2I TCCGGA 1 cut(s) 831
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 4 cut(s) 15, 236, 497, 828
LmnI GCTCC 4 cut(s) 400, 434, 517, 664
Lsp1109I GCAGC 1 cut(s) 597
LweI GCATC 2 cut(s) 558, 825
MaeIII GTNAC 6 cut(s) 274, 347, 448, 667, 765, 802
MalI GATC 4 cut(s) 17, 238, 499, 830
MboI GATC 4 cut(s) 15, 236, 497, 828
MboII GAAGA 2 cut(s) 122, 272
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 514, 523
MluCI AATT 1 cut(s) 433
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 50
MroI TCCGGA 1 cut(s) 831
MseI TTAA 3 cut(s) 138, 311, 681
MspI CCGG 4 cut(s) 71, 516, 601, 832
MspR9I CCNGG 4 cut(s) 72, 516, 517, 607
Mva1269I GAATGC 2 cut(s) 130, 565
MvaI CCWGG 1 cut(s) 607
MwoI GCNNNNNNNGC 3 cut(s) 352, 518, 740
NciI CCSGG 3 cut(s) 72, 516, 517
NdeI CATATG 1 cut(s) 55
NdeII GATC 4 cut(s) 15, 236, 497, 828
NlaIII CATG 4 cut(s) 67, 163, 488, 631
NlaIV GGNNCC 2 cut(s) 499, 513
NmuCI GTSAC 2 cut(s) 274, 802
NspI RCATGY 1 cut(s) 67
PaeI GCATGC 1 cut(s) 67
PctI GAATGC 2 cut(s) 130, 565
PfeI GAWTC 3 cut(s) 98, 167, 294
PkrI GCNGC 1 cut(s) 612
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 605
PspGI CCWGG 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 499, 513
PspPI GGNCC 4 cut(s) 222, 444, 603, 863
PsuI RGATCY 1 cut(s) 497
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 3 cut(s) 138, 311, 681
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 4 cut(s) 15, 236, 497, 828
Sau96I GGNCC 4 cut(s) 222, 444, 603, 863
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 4 cut(s) 72, 516, 517, 607
SduI GDGCHC 2 cut(s) 514, 523
SetI ASST 9 cut(s) 23, 51, 192, 227, 397, 431, 708, 862, 885
SfaNI GCATC 2 cut(s) 558, 825
SinI GGWCC 3 cut(s) 222, 603, 863
SmaI CCCGGG 1 cut(s) 517
SphI GCATGC 1 cut(s) 67
Sse9I AATT 1 cut(s) 433
StyD4I CCNGG 4 cut(s) 70, 514, 515, 605
StyI CCWWGG 1 cut(s) 866
TaaI ACNGT 3 cut(s) 454, 505, 808
TaqI TCGA 3 cut(s) 31, 108, 176
TasI AATT 1 cut(s) 433
TfiI GAWTC 3 cut(s) 98, 167, 294
Tru1I TTAA 3 cut(s) 138, 311, 681
Tru9I TTAA 3 cut(s) 138, 311, 681
TscAI CASTG 2 cut(s) 811, 904
TseFI GTSAC 2 cut(s) 274, 802
TseI GCWGC 1 cut(s) 610
Tsp45I GTSAC 2 cut(s) 274, 802
TspDTI ATGAA 6 cut(s) 90, 137, 264, 318, 361, 574
TspGWI ACGGA 1 cut(s) 107
TspMI CCCGGG 1 cut(s) 515
TspRI CASTG 2 cut(s) 811, 904
VpaK11BI GGWCC 3 cut(s) 222, 603, 863
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmaI CCCGGG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.