Rw6G029450

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000216
Physical Location & Seq
Reverse (-)
53575993 .. 53576829
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G029450.1

Sequence Viewer

Length: 837 bp
ATGTTTGTCGTACATTCATACCCTACGGCAGATAACACGGCAGAATTGCTTACAATTGATTCCAAGCAGACTCATGCGGAGCTAAGAGCTCTCGATTTTCTTCCCAGTAAGCTGGTTGTCGTAGCAACATACAATGACTTGATTTTGTTGTGTGAAAAAACATTCGGTTTTCAAGGGAAGTACTACATCTGCAATCCGTACACCAAGCAATGGGTTGCTGTTCCTCCTCCTCCCATTCTATTCCCCCAACAAGAAGTAGGTGTGGGATTTATCTGTGATTCCGACTATAGGTGCCGGATTGTACGACTCCTTGAATTTGACGCAGAACCTGATGACTTCCGATTAAAGGTGGAGATGTTCTCTTCCGAGACTGGTAAATGGATAGAATCAGTTGTCCTATGCCCAAAAAGGTTTAGACCTCATCCTCTCGAGCAGAGTGCACCAGCCCTTGCTTACAATGGAACCTTGTACTGGTTAGGTCGTGGTGGGATTCTTATTGGGTTGGAGCCTTTCAAGCTCGACAATAAAAATAACCATAACTATCATTGTCATTTTATTTCCGGGCCTCGTTACGGGTTTCCATTGTTTAATGATTCATCCAAATACATCGATTGCCTGGGTGTCTGCAGGGGTTGTGTGAGGATGTGCCGGCTGTATACTCTGACACGTTTCATTCTTTTTGTGTGGGAGCTGAAAGAAGATGAGGTGGATGGAGTTGGAGGCAAAAAGATGAAATGGTGTTTAAAGGAGAGGATCTTCCTGGACCAAATTAAGTCGGAATATATGGTGCCTGACCCCTACCGGCTTCTGGCTTGGACCCAAATGATGAAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

278

Amino Acids

32.24

Weight (kDa)

7.5

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 36 - 257 1.9e-16 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 291, 787
AccB7I CCANNNNNTGG 1 cut(s) 210
AccI GTMKAC 1 cut(s) 656
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 761
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 5 cut(s) 12, 182, 200, 303, 470
AfiI CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 173, 314, 514
AjnI CCWGG 2 cut(s) 615, 759
AluBI AGCT 5 cut(s) 82, 89, 112, 517, 691
AluI AGCT 5 cut(s) 82, 89, 112, 517, 691
Alw21I GWGCWC 2 cut(s) 91, 442
Alw26I GTCTC 1 cut(s) 362
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 1 cut(s) 761
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 1 cut(s) 563
ApaLI GTGCAC 1 cut(s) 438
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 3 cut(s) 563, 763, 816
AsuC2I CCSGG 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 763, 816
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 2 cut(s) 291, 787
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 91, 442
BccI CCATC 1 cut(s) 704
BceAI ACGGC 2 cut(s) 42, 54
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 2 cut(s) 617, 761
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 362
BfmI CTRYAG 2 cut(s) 286, 625
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 3 cut(s) 562, 617, 761
Bme18I GGWCC 2 cut(s) 763, 816
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 563, 763, 816
BmiI GGNNCC 5 cut(s) 293, 463, 507, 789, 818
BmrFI CCNGG 3 cut(s) 562, 617, 761
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpuMI CCSGG 1 cut(s) 562
Bsa29I ATCGAT 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 616
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
Bse118I RCCGGY 2 cut(s) 648, 801
Bse1I ACTGG 3 cut(s) 105, 376, 476
Bse3DI GCAATG 1 cut(s) 215
BseBI CCWGG 2 cut(s) 617, 761
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 4 cut(s) 421, 596, 648, 715
BseLI CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
BseMI GCAATG 1 cut(s) 215
BseNI ACTGG 3 cut(s) 105, 376, 476
BseRI GAGGAG 2 cut(s) 216, 219
BseSI GKGCMC 1 cut(s) 442
BshFI GGCC 1 cut(s) 565
BshNI GGYRCC 2 cut(s) 291, 787
BshVI ATCGAT 1 cut(s) 609
BsiHKAI GWGCWC 2 cut(s) 91, 442
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 4 cut(s) 295, 561, 649, 802
BslI CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
BsmAI GTCTC 1 cut(s) 362
BsnI GGCC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 91, 442
Bsp143I GATC 1 cut(s) 753
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 565
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 5 cut(s) 293, 463, 507, 789, 818
BspMAI CTGCAG 1 cut(s) 629
BspPI GGATC 1 cut(s) 761
BspT107I GGYRCC 2 cut(s) 291, 787
BsrDI GCAATG 1 cut(s) 215
BsrFI RCCGGY 2 cut(s) 648, 801
BsrI ACTGG 3 cut(s) 105, 376, 476
BssAI RCCGGY 2 cut(s) 648, 801
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 1 cut(s) 753
BssNAI GTATAC 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 617, 761
Bst6I CTCTTC 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 650
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 4 cut(s) 421, 596, 648, 715
BstKTI GATC 1 cut(s) 756
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 753
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 2 cut(s) 617, 761
BstSCI CCNGG 3 cut(s) 560, 615, 759
BstSFI CTRYAG 2 cut(s) 286, 625
BstSLI GKGCMC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 753
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 753
BstZ17I GTATAC 1 cut(s) 657
Bsu15I ATCGAT 1 cut(s) 609
BsuRI GGCC 1 cut(s) 565
BsuTUI ATCGAT 1 cut(s) 609
BtsCI GGATG 4 cut(s) 421, 596, 648, 715
Cac8I GCNNGC 1 cut(s) 650
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 2 cut(s) 648, 801
Cfr13I GGNCC 3 cut(s) 563, 763, 816
ClaI ATCGAT 1 cut(s) 609
CseI GACGC 1 cut(s) 329
Csp6I GTAC 5 cut(s) 11, 181, 199, 302, 469
CviAII CATG 1 cut(s) 74
CviQI GTAC 5 cut(s) 11, 181, 199, 302, 469
DdeI CTNAG 1 cut(s) 83
DpnI GATC 1 cut(s) 755
DpnII GATC 1 cut(s) 753
DraI TTTAAA 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 763, 816
Eco53kI GAGCTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 89
EcoRII CCWGG 2 cut(s) 615, 759
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 1 cut(s) 77
FatI CATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 656
FokI GGATG 4 cut(s) 408, 583, 655, 722
FriOI GRGCYC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 565
HapII CCGG 4 cut(s) 295, 561, 649, 802
HgaI GACGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 77
HinfI GANTC 7 cut(s) 59, 70, 278, 306, 386, 490, 593
HpaII CCGG 4 cut(s) 295, 561, 649, 802
Hpy166II GTNNAC 3 cut(s) 201, 440, 657
Hpy188I TCNGA 5 cut(s) 283, 341, 367, 663, 778
Hpy188III TCNNGA 2 cut(s) 92, 428
Hpy8I GTNNAC 3 cut(s) 201, 440, 657
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 3 cut(s) 192, 440, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 1 cut(s) 77
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
Kzo9I GATC 1 cut(s) 753
LmnI GCTCC 3 cut(s) 79, 505, 688
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 569
MalI GATC 1 cut(s) 755
MboI GATC 1 cut(s) 753
MboII GAAGA 4 cut(s) 92, 354, 710, 748
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 2 cut(s) 91, 442
MluCI AATT 4 cut(s) 44, 54, 314, 768
MlyI GAGTC 2 cut(s) 64, 300
MmeI TCCRAC 4 cut(s) 306, 483, 697, 756
MroNI GCCGGC 1 cut(s) 648
MseI TTAA 4 cut(s) 344, 588, 743, 771
MspI CCGG 4 cut(s) 295, 561, 649, 802
MspR9I CCNGG 3 cut(s) 562, 617, 761
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 2 cut(s) 617, 761
MwoI GCNNNNNNNGC 1 cut(s) 514
NaeI GCCGGC 1 cut(s) 650
NciI CCSGG 1 cut(s) 562
NdeII GATC 1 cut(s) 753
NgoMIV GCCGGC 1 cut(s) 648
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 5 cut(s) 293, 463, 507, 789, 818
PaeR7I CTCGAG 1 cut(s) 428
PdiI GCCGGC 1 cut(s) 650
PfeI GAWTC 5 cut(s) 59, 278, 386, 490, 593
PflMI CCANNNNNTGG 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 759
PleI GAGTC 2 cut(s) 64, 300
PpsI GAGTC 2 cut(s) 64, 300
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 615, 759
PspGI CCWGG 2 cut(s) 615, 759
PspN4I GGNNCC 5 cut(s) 293, 463, 507, 789, 818
PspPI GGNCC 3 cut(s) 563, 763, 816
PstI CTGCAG 1 cut(s) 629
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 753
RsaI GTAC 5 cut(s) 12, 182, 200, 303, 470
RsaNI GTAC 5 cut(s) 11, 181, 199, 302, 469
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 4 cut(s) 344, 588, 743, 771
Sau3AI GATC 1 cut(s) 753
Sau96I GGNCC 3 cut(s) 563, 763, 816
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 64, 300
ScrFI CCNGG 3 cut(s) 562, 617, 761
SduI GDGCHC 2 cut(s) 91, 442
SfcI CTRYAG 2 cut(s) 286, 625
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 2 cut(s) 763, 816
SlaI CTCGAG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 44, 54, 314, 768
SsiI CCGC 1 cut(s) 77
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 3 cut(s) 560, 615, 759
TaiI ACGT 1 cut(s) 670
TaqI TCGA 4 cut(s) 93, 429, 519, 609
TasI AATT 4 cut(s) 44, 54, 314, 768
TatI WGTACW 2 cut(s) 180, 468
TfiI GAWTC 5 cut(s) 59, 278, 386, 490, 593
Tru1I TTAA 4 cut(s) 344, 588, 743, 771
Tru9I TTAA 4 cut(s) 344, 588, 743, 771
TspDTI ATGAA 4 cut(s) 6, 585, 661, 746
TspGWI ACGGA 1 cut(s) 186
Van91I CCANNNNNTGG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 438
VpaK11BI GGWCC 2 cut(s) 763, 816
XapI RAATTY 1 cut(s) 314
XhoI CTCGAG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 656
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.