Rh2DG599500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000216
Physical Location & Seq
Forward (+)
83139876 .. 83140394
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG599500.1

Sequence Viewer

Length: 519 bp
ATGATATATTGGGGTAGTGTTGAAGTTTATGAAGGGAATTTTCTCATTGGATTGAATCCGTTCACAATCAACAGCAGCAACAATATTGCTAGTTTGTCTAGTACTAGCAGCAGCAGCAGCAGTACTAATGCTAATGGTGGTGATATTATTGATCACAACAAATTTTGTTTCATAGCATTAGGAGAGGATGAGGATCTTCAATTTTCGCATCTAGGAGTGTACAAAGGGTGTATGCGGATAATCGAGTATGATAGTGAAACGCGTACTCTATCTGTTGTGGACTTGAATGATGAAGAAATCCATGAAGGAGTTGTCAAATTATGTCTGGATCAGATGAGGGTTTATTCACTGAATGAAGAAATTATTACAAACCATGATACGAGTCATACGACGGTCTCAATTATAGGTTTCGACCCAGATAATGATGATATTTTGTATCTGGAAAGAGATGGAGACATTCTTAAGTGCAATATTCATACAAGGACATGGTCGACGGTTGCTAAGAAGACTGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

172

Amino Acids

19.18

Weight (kDa)

4.46

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 491
AccII CGCG 1 cut(s) 262
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 201, 336
AcsI RAATTY 2 cut(s) 37, 161
AfaI GTAC 4 cut(s) 103, 124, 221, 265
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 4 cut(s) 23, 55, 200, 286
Alw26I GTCTC 2 cut(s) 400, 447
AlwI GGATC 2 cut(s) 201, 336
ApeKI GCWGC 5 cut(s) 75, 108, 111, 114, 117
ApoI RAATTY 2 cut(s) 37, 161
Asp700I GAANNNNTTC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 5 cut(s) 87, 120, 123, 126, 129
BccI CCATC 1 cut(s) 443
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 400, 447
BfaI CTAG 4 cut(s) 90, 99, 105, 212
BfrI CTTAAG 1 cut(s) 461
BisI GCNGC 5 cut(s) 76, 109, 112, 115, 118
BlsI GCNGC 5 cut(s) 77, 110, 113, 116, 119
BmcAI AGTACT 2 cut(s) 103, 124
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 192
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 192
BseNI ACTGG 1 cut(s) 514
BseXI GCAGC 5 cut(s) 87, 120, 123, 126, 129
Bsh1236I CGCG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 400, 447
Bso31I GGTCTC 1 cut(s) 400
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 151, 193, 328
BspACI CCGC 1 cut(s) 235
BspFNI CGCG 1 cut(s) 262
BspPI GGATC 2 cut(s) 201, 336
BspTI CTTAAG 1 cut(s) 461
BspTNI GGTCTC 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 1 cut(s) 514
BssMI GATC 3 cut(s) 151, 193, 328
Bst4CI ACNGT 2 cut(s) 394, 496
BstAFI CTTAAG 1 cut(s) 461
BstAUI TGTACA 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 262
BstKTI GATC 3 cut(s) 154, 196, 331
BstMAI GTCTC 2 cut(s) 400, 447
BstMBI GATC 3 cut(s) 151, 193, 328
BstMWI GCNNNNNNNGC 2 cut(s) 114, 117
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 5 cut(s) 87, 120, 123, 126, 129
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 347
Csp6I GTAC 4 cut(s) 102, 123, 220, 264
CviAII CATG 3 cut(s) 302, 374, 486
CviQI GTAC 4 cut(s) 102, 123, 220, 264
DdeI CTNAG 1 cut(s) 501
DpnI GATC 3 cut(s) 153, 195, 330
DpnII GATC 3 cut(s) 151, 193, 328
Eco31I GGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 305, 377, 489
FatI CATG 3 cut(s) 301, 373, 485
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 5 cut(s) 76, 109, 112, 115, 118
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 5 cut(s) 76, 109, 112, 115, 118
FspBI CTAG 4 cut(s) 90, 99, 105, 212
GluI GCNGC 5 cut(s) 76, 109, 112, 115, 118
Hin1II CATG 3 cut(s) 305, 377, 489
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 2 cut(s) 55, 382
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 4 cut(s) 63, 220, 280, 492
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 2 cut(s) 326, 440
Hpy8I GTNNAC 4 cut(s) 63, 220, 280, 492
Hpy99I CGWCG 2 cut(s) 394, 496
HpyAV CCTTC 2 cut(s) 26, 299
HpyCH4III ACNGT 2 cut(s) 394, 496
HpyCH4V TGCA 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 117
HpyF3I CTNAG 1 cut(s) 501
Hsp92II CATG 3 cut(s) 305, 377, 489
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 3 cut(s) 151, 193, 328
LpnPI CCDG 4 cut(s) 311, 425, 429, 495
Lsp1109I GCAGC 5 cut(s) 87, 120, 123, 126, 129
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 90, 99, 105, 212
MalI GATC 3 cut(s) 153, 195, 330
MboI GATC 3 cut(s) 151, 193, 328
MboII GAAGA 4 cut(s) 188, 305, 368, 517
MflI RGATCY 1 cut(s) 193
MluCI AATT 6 cut(s) 37, 161, 200, 317, 360, 399
MluI ACGCGT 1 cut(s) 260
MlyI GAGTC 1 cut(s) 391
MnlI CCTC 3 cut(s) 178, 184, 330
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 2 cut(s) 462, 517
MspCI CTTAAG 1 cut(s) 461
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 114, 117
NdeII GATC 3 cut(s) 151, 193, 328
NlaIII CATG 3 cut(s) 305, 377, 489
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 55
PflFI GACNNNGTC 1 cut(s) 487
PkrI GCNGC 5 cut(s) 77, 110, 113, 116, 119
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 487
RsaI GTAC 4 cut(s) 103, 124, 221, 265
RsaNI GTAC 4 cut(s) 102, 123, 220, 264
SalI GTCGAC 1 cut(s) 490
SaqAI TTAA 2 cut(s) 462, 517
SatI GCNGC 5 cut(s) 76, 109, 112, 115, 118
Sau3AI GATC 3 cut(s) 151, 193, 328
ScaI AGTACT 2 cut(s) 103, 124
SchI GAGTC 1 cut(s) 391
SetI ASST 1 cut(s) 409
SfaNI GCATC 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 6 cut(s) 37, 161, 200, 317, 360, 399
SsiI CCGC 1 cut(s) 235
SspI AATATT 2 cut(s) 85, 472
SspMI CTAG 4 cut(s) 90, 99, 105, 212
TaaI ACNGT 2 cut(s) 394, 496
TaqI TCGA 3 cut(s) 243, 411, 491
TasI AATT 6 cut(s) 37, 161, 200, 317, 360, 399
TatI WGTACW 3 cut(s) 101, 122, 219
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 462, 517
Tru9I TTAA 2 cut(s) 462, 517
TscAI CASTG 1 cut(s) 354
TseI GCWGC 5 cut(s) 75, 108, 111, 114, 117
TspDTI ATGAA 6 cut(s) 45, 160, 306, 318, 369, 464
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 487
Vha464I CTTAAG 1 cut(s) 461
XapI RAATTY 2 cut(s) 37, 161
XmiI GTMKAC 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 4 cut(s) 90, 99, 105, 212
ZrmI AGTACT 2 cut(s) 103, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.