FvH4_2g24270

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000216
Physical Location & Seq
Reverse (-)
19839044 .. 19840051
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24270.t1

Sequence Viewer

Length: 1008 bp
ATGTTTGTCAACTATTATACATCATTTGGATCATATCGCAAGGCCGAGTTATTAACGGTTTCCAAGCAGTCTCCTCCGGGATTAAAAGTAAAACAACTTGATTTTGGTCCCAGCCTTTTCTTCCATGTCGATGAAGTGGTAGCCACGTACAATGACTTGGTTTTAATGTGTCTCAATTGTTATCGTCAAGGGAATATTTACTACATTTGCAATCCAACCATCAAGCAATGGATTGCTCTTCCTCCGGCTCCGATCTTCCATGGAAAAAAGCCTGTGGGATTTACCTTAGATTCCGACAATAAGTGCTGCAAGGTTGTGAGAATTCTTGGATTTAAACTAGAGCTGGAGACCCCTTCATTAGAGGTGCAGATCTTCTCCTCTGAGACTGGTGAATGGATACAATTAGACCTTGTATTACAAGGGTGTAAATCTCGTCATCGTTACAGTTTTATCAATATAATGAATTATTCACCAGTTGCTCACAATGGAACATTGTACTGGATTACTTGTAGTGGCCATCTTATTGGGTTGGAGCTTTTCAGTAAGTTCAACATCAACACCACAAAATGTCACGGTCGTTTGATTTCCAACCCTAATCCTGTACGTCGAGTTAACTTGAAAGATGAGAGGCTTTGTGTCTGCCAGGGGTCTGTCAGGCTATGCCAGTTGTATTCGGGACCTGAAAGCAAACTCAGTCTCTATATTTGGGAGTTGAAAGAAGATGACGAATGGTGTTCCAAAGAGTTTTTCGACCTGCACCCATTGCTTTCGGGTTTCCAGATGAGATATCGACTTCTAGCTTTTGACTCAAATGATGAAGATATATTGTATCTATGGCGTAAGGAACAACCATCTGAGACGTTGGACATCCTCATGTGCAATATTCGTACATTGAAGGCAACTGAAATCTCTCAAAAGTTTTCATCATCAAGTACTTTTCCGTTAAGATCCTTTCAATTTGTGCTCCCATGGTGGCGGTGGCCAACACCAGTCCCTCGACTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

336

Amino Acids

38.92

Weight (kDa)

8.49

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 46 - 304 2.6e-18 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 51 - 291 5.6e-07 F-box associated beta propeller domain
FBA_3 PF08268 58 - 297 6.4e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 762
AciI CCGC 1 cut(s) 976
AclWI GGATC 2 cut(s) 37, 942
AcoI YGGCCR 2 cut(s) 514, 980
AcsI RAATTY 1 cut(s) 321
AfaI GTAC 5 cut(s) 149, 497, 603, 889, 934
AgsI TTSAA 5 cut(s) 550, 619, 715, 895, 956
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 2 cut(s) 731, 763
AluBI AGCT 3 cut(s) 343, 535, 800
AluI AGCT 3 cut(s) 343, 535, 800
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 6 cut(s) 75, 176, 341, 377, 701, 851
AlwI GGATC 2 cut(s) 37, 942
AoxI GGCC 3 cut(s) 42, 514, 980
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 107, 677
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 401, 462
AvaII GGWCC 2 cut(s) 107, 677
BalI TGGCCA 2 cut(s) 516, 982
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 1 cut(s) 293
BccI CCATC 3 cut(s) 227, 525, 859
BciT130I CCWGG 1 cut(s) 644
BciVI GTATCC 1 cut(s) 390
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 6 cut(s) 75, 176, 341, 377, 701, 851
BfaI CTAG 3 cut(s) 338, 797, 1006
BfuAI ACCTGC 1 cut(s) 762
BfuI GTATCC 1 cut(s) 390
BglII AGATCT 1 cut(s) 369
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
BmcAI AGTACT 1 cut(s) 934
Bme1390I CCNGG 2 cut(s) 78, 644
Bme18I GGWCC 2 cut(s) 107, 677
BmgT120I GGNCC 2 cut(s) 107, 677
BmiI GGNNCC 3 cut(s) 109, 249, 678
BmrFI CCNGG 2 cut(s) 78, 644
BpmI CTGGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 259, 643, 968
Bse1I ACTGG 5 cut(s) 391, 473, 503, 664, 989
Bse3DI GCAATG 2 cut(s) 233, 761
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 3 cut(s) 259, 643, 968
BseGI GGATG 1 cut(s) 867
BseMI GCAATG 2 cut(s) 233, 761
BseMII CTCAG 3 cut(s) 372, 706, 846
BseNI ACTGG 5 cut(s) 391, 473, 503, 664, 989
BseRI GAGGAG 2 cut(s) 63, 367
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 2 cut(s) 386, 740
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 3 cut(s) 44, 516, 982
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 1 cut(s) 966
BsiSI CCGG 2 cut(s) 77, 245
BslFI GGGAC 3 cut(s) 93, 690, 977
BsmAI GTCTC 6 cut(s) 75, 176, 341, 377, 701, 851
BsmBI CGTCTC 1 cut(s) 851
BsmFI GGGAC 3 cut(s) 93, 690, 977
BsnI GGCC 3 cut(s) 44, 516, 982
Bso31I GGTCTC 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 966
Bsp143I GATC 4 cut(s) 29, 252, 369, 947
Bsp19I CCATGG 2 cut(s) 259, 968
BspACI CCGC 1 cut(s) 976
BspANI GGCC 3 cut(s) 44, 516, 982
BspCNI CTCAG 3 cut(s) 373, 705, 847
BspLI GGNNCC 3 cut(s) 109, 249, 678
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 2 cut(s) 37, 942
BspQI GCTCTTC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 2 cut(s) 233, 761
BsrI ACTGG 5 cut(s) 391, 473, 503, 664, 989
BssECI CCNNGG 3 cut(s) 259, 643, 968
BssMI GATC 4 cut(s) 29, 252, 369, 947
BssT1I CCWWGG 2 cut(s) 259, 968
Bst2UI CCWGG 1 cut(s) 644
Bst4CI ACNGT 3 cut(s) 58, 446, 575
Bst6I CTCTTC 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 147
BstDEI CTNAG 4 cut(s) 286, 381, 692, 855
BstDSI CCRYGG 2 cut(s) 259, 968
BstF5I GGATG 1 cut(s) 867
BstKTI GATC 4 cut(s) 32, 255, 372, 950
BstMAI GTCTC 6 cut(s) 75, 176, 341, 377, 701, 851
BstMBI GATC 4 cut(s) 29, 252, 369, 947
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNI CCWGG 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 76, 642
BstV1I GCAGC 1 cut(s) 293
BstX2I RGATCY 2 cut(s) 369, 947
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 2 cut(s) 369, 947
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 3 cut(s) 44, 516, 982
BtgI CCRYGG 2 cut(s) 259, 968
BtsCI GGATG 1 cut(s) 867
BveI ACCTGC 1 cut(s) 762
Cfr13I GGNCC 2 cut(s) 107, 677
Csp6I GTAC 5 cut(s) 148, 496, 602, 888, 933
CviAII CATG 4 cut(s) 125, 260, 874, 969
CviQI GTAC 5 cut(s) 148, 496, 602, 888, 933
DdeI CTNAG 4 cut(s) 286, 381, 692, 855
DpnI GATC 4 cut(s) 31, 254, 371, 949
DpnII GATC 4 cut(s) 29, 252, 369, 947
DraI TTTAAA 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 514, 980
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 259, 968
Eco31I GGTCTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 788
Eco47I GGWCC 2 cut(s) 107, 677
EcoO109I RGGNCCY 1 cut(s) 677
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 642
EcoRV GATATC 1 cut(s) 788
EcoT14I CCWWGG 2 cut(s) 259, 968
ErhI CCWWGG 2 cut(s) 259, 968
Esp3I CGTCTC 1 cut(s) 851
FaeI CATG 4 cut(s) 128, 263, 877, 972
FaqI GGGAC 3 cut(s) 93, 690, 977
FatI CATG 4 cut(s) 124, 259, 873, 968
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 854
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 3 cut(s) 338, 797, 1006
GluI GCNGC 1 cut(s) 307
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 3 cut(s) 44, 516, 982
HapII CCGG 2 cut(s) 77, 245
Hin1II CATG 4 cut(s) 128, 263, 877, 972
HincII GTYRAC 2 cut(s) 10, 613
HindII GTYRAC 2 cut(s) 10, 613
HinfI GANTC 2 cut(s) 290, 806
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 2 cut(s) 77, 245
HphI GGTGA 2 cut(s) 401, 462
Hpy166II GTNNAC 2 cut(s) 10, 613
Hpy188I TCNGA 4 cut(s) 252, 295, 382, 856
Hpy188III TCNNGA 2 cut(s) 675, 778
Hpy8I GTNNAC 2 cut(s) 10, 613
Hpy99I CGWCG 1 cut(s) 609
HpyAV CCTTC 2 cut(s) 363, 889
HpyCH4III ACNGT 3 cut(s) 58, 446, 575
HpyCH4IV ACGT 3 cut(s) 146, 604, 860
HpyCH4V TGCA 5 cut(s) 210, 309, 367, 757, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 4 cut(s) 286, 381, 692, 855
HpySE526I ACGT 3 cut(s) 146, 604, 860
Hsp92II CATG 4 cut(s) 128, 263, 877, 972
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 4 cut(s) 29, 252, 369, 947
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 3 cut(s) 253, 532, 969
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 3 cut(s) 338, 797, 1006
MaeII ACGT 3 cut(s) 146, 604, 860
MaeIII GTNAC 2 cut(s) 440, 569
MalI GATC 4 cut(s) 31, 254, 371, 949
MboI GATC 4 cut(s) 29, 252, 369, 947
MboII GAAGA 6 cut(s) 112, 230, 247, 364, 731, 830
MfeI CAATTG 1 cut(s) 175
MflI RGATCY 2 cut(s) 369, 947
MhlI GDGCHC 1 cut(s) 966
MlsI TGGCCA 2 cut(s) 516, 982
MluCI AATT 5 cut(s) 175, 321, 401, 463, 956
MluNI TGGCCA 2 cut(s) 516, 982
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 5 cut(s) 239, 318, 510, 612, 843
MnlI CCTC 7 cut(s) 84, 252, 355, 388, 621, 881, 1005
Mox20I TGGCCA 2 cut(s) 516, 982
MscI TGGCCA 2 cut(s) 516, 982
MseI TTAA 6 cut(s) 53, 83, 164, 333, 612, 944
MslI CAYNNNNRTG 2 cut(s) 129, 872
Msp20I TGGCCA 2 cut(s) 516, 982
MspI CCGG 2 cut(s) 77, 245
MspR9I CCNGG 2 cut(s) 78, 644
MunI CAATTG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 644
MwoI GCNNNNNNNGC 1 cut(s) 763
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 2 cut(s) 259, 968
NdeII GATC 4 cut(s) 29, 252, 369, 947
NlaIII CATG 4 cut(s) 128, 263, 877, 972
NlaIV GGNNCC 3 cut(s) 109, 249, 678
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 308
PleI GAGTC 1 cut(s) 800
PpsI GAGTC 1 cut(s) 800
Ppu21I YACGTR 1 cut(s) 147
PpuMI RGGWCCY 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 677
Psp6I CCWGG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 109, 249, 678
PspPI GGNCC 2 cut(s) 107, 677
PspPPI RGGWCCY 1 cut(s) 677
PsuI RGATCY 2 cut(s) 369, 947
RsaI GTAC 5 cut(s) 149, 497, 603, 889, 934
RsaNI GTAC 5 cut(s) 148, 496, 602, 888, 933
RseI CAYNNNNRTG 2 cut(s) 129, 872
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 6 cut(s) 53, 83, 164, 333, 612, 944
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 4 cut(s) 29, 252, 369, 947
Sau96I GGNCC 2 cut(s) 107, 677
ScaI AGTACT 1 cut(s) 934
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 2 cut(s) 78, 644
SduI GDGCHC 1 cut(s) 966
SinI GGWCC 2 cut(s) 107, 677
SmiMI CAYNNNNRTG 2 cut(s) 129, 872
Sse9I AATT 5 cut(s) 175, 321, 401, 463, 956
SsiI CCGC 1 cut(s) 976
SspI AATATT 2 cut(s) 196, 883
SspMI CTAG 3 cut(s) 338, 797, 1006
StyD4I CCNGG 2 cut(s) 76, 642
StyI CCWWGG 2 cut(s) 259, 968
TaaI ACNGT 3 cut(s) 58, 446, 575
TaiI ACGT 3 cut(s) 149, 607, 863
TaqI TCGA 5 cut(s) 129, 607, 750, 790, 997
TasI AATT 5 cut(s) 175, 321, 401, 463, 956
TatI WGTACW 2 cut(s) 495, 932
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 6 cut(s) 53, 83, 164, 333, 612, 944
Tru9I TTAA 6 cut(s) 53, 83, 164, 333, 612, 944
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 147, 345, 476, 831, 912
TspGWI ACGGA 1 cut(s) 930
VpaK11BI GGWCC 2 cut(s) 107, 677
XapI RAATTY 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 975
XspI CTAG 3 cut(s) 338, 797, 1006
ZrmI AGTACT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.