Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000216

Physical Location & Seq

Genomic Coordinates Forward (+)

23852350 .. 23856442

Gene Structure 4093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G248100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGAAAGCTTCCAAGGGCCACCACGATGAATTTGAAGACGATGATGAAGAGTCTCATGGAGGGAATTTGGCAGTGAAGGTAGAAGGGCAAGGCAGGGAAAAGAACCGGTCCAAGCATTCCGAGACTGAGCAGCGTAGGAGGAGCAAGATTAATGAGAGATTTCAGATGTTGAGAGATCTCATACCCAAAAATGATCAGAAAAGGGATAAGGCCTCATTCTTGTTGGAGGTTATAGAGTATATACAATTTTTACAGGAGAAGGTAAATTTGTATGAGGGATACCAAGGATGGAGTCCAGAGCCCACAAAATTGATGCCATGGAAAAATCATAATAGGCCTGGAGAAAATTTTGTAGATCAGTCTCAAGTTATGAACAATGGTTCTGGTCATGAGAATAATGCAGTTGTCTCTCCAGCAATGCTCCCCAACACCCAGAACTCAGTGGAATCTGACTTGGGCTCTGGCGTTGTTTACAAAGCATTGGATCACATACCTGGGTTAGCTACTCGATCAGTTCCTAATGTGCAACAACAAAACATCTTTGACCCAATTGGGAGTGTTGGACTACCCACACAACCTCTGCAGGAATCTATTTCTGATGCTGAGAACATGACTTCCAATCCTCCATACCAATTGTGGCAGGGTATAACATCTACAACTGCTTCAGACGATAAACTGAAGAAACAGGATGAAAATAGTGGATCTGGTAGCATCTCAAGTGCCTACTCTCAAGGGGTTTTGAACAATCTGACACAGGCACTGCAATCTTCTGGTGTGGATTTGTCCCAGGCCAGCATCTCGGTTCAAATTAATGTCGGGAGTCGAGTAGACAGTGGACTGACATCCATGGCATCTAGTTCAAAGGCACAATTGAACCAATCCTTGAACAATCAAATGACACAGACCCAAGTAAGCAGTTGTGATGAGGACTTTGAACCGGCTCATAAGCGGTTCAGAACAGGAGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

325

Amino Acids

35.75

Weight (kDa)

5.25

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38860 AT5G38860
fragaria_vesca	FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica	MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica	Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis	pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis	RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata	RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora	Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa	Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha	Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana	Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	831
AciI	CCGC	1 cut(s)	952
AclWI	GGATC	2 cut(s)	495, 712
AcsI	RAATTY	4 cut(s)	32, 67, 268, 349
AcuI	CTGAAG	2 cut(s)	651, 701
AgeI	ACCGGT	1 cut(s)	108
AgsI	TTSAA	7 cut(s)	38, 745, 809, 864, 877, 889, 938
AjnI	CCWGG	3 cut(s)	340, 496, 789
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
AluBI	AGCT	3 cut(s)	11, 506, 972
AluI	AGCT	3 cut(s)	11, 506, 972
Alw26I	GTCTC	4 cut(s)	60, 119, 369, 415
AlwI	GGATC	2 cut(s)	495, 712
AlwNI	CAGNNNCTG	1 cut(s)	763
AoxI	GGCC	4 cut(s)	19, 213, 338, 792
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	4 cut(s)	32, 67, 268, 349
AseI	ATTAAT	2 cut(s)	153, 813
AsiGI	ACCGGT	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	19, 111
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	306, 464
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	3 cut(s)	342, 498, 791
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	4 cut(s)	60, 119, 369, 415
BfaI	CTAG	2 cut(s)	858, 973
BfmI	CTRYAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	3 cut(s)	342, 498, 791
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	19, 111
BmrFI	CCNGG	3 cut(s)	342, 498, 791
BmsI	GCATC	5 cut(s)	306, 592, 723, 807, 863
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	363, 399
BpuEI	CTTGAG	3 cut(s)	351, 703, 717
BsaJI	CCNNGG	6 cut(s)	15, 286, 320, 497, 789, 849
BsaWI	WCCGGW	1 cut(s)	108
Bse118I	RCCGGY	2 cut(s)	108, 940
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	3 cut(s)	342, 498, 791
BseDI	CCNNGG	6 cut(s)	15, 286, 320, 497, 789, 849
BseGI	GGATG	3 cut(s)	296, 697, 845
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	120, 456, 597
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	4 cut(s)	21, 215, 340, 794
BshTI	ACCGGT	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	109, 941
BslFI	GGGAC	1 cut(s)	772
BsmAI	GTCTC	4 cut(s)	60, 119, 369, 415
BsmFI	GGGAC	1 cut(s)	772
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	21, 215, 340, 794
Bsp1286I	GDGCHC	2 cut(s)	306, 464
Bsp143I	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
Bsp19I	CCATGG	2 cut(s)	320, 849
BspACI	CCGC	1 cut(s)	952
BspANI	GGCC	4 cut(s)	21, 215, 340, 794
BspCNI	CTCAG	3 cut(s)	121, 455, 598
BspHI	TCATGA	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	588
BspPI	GGATC	2 cut(s)	495, 712
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	108, 940
BssAI	RCCGGY	2 cut(s)	108, 940
BssECI	CCNNGG	6 cut(s)	15, 286, 320, 497, 789, 849
BssMI	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
BssT1I	CCWWGG	4 cut(s)	15, 286, 320, 849
Bst2UI	CCWGG	3 cut(s)	342, 498, 791
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	3 cut(s)	129, 442, 606
BstDSI	CCRYGG	2 cut(s)	320, 849
BstF5I	GGATG	3 cut(s)	296, 697, 845
BstKTI	GATC	6 cut(s)	181, 199, 361, 490, 515, 707
BstMAI	GTCTC	4 cut(s)	60, 119, 369, 415
BstMBI	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
BstNI	CCWGG	3 cut(s)	342, 498, 791
BstSCI	CCNGG	3 cut(s)	340, 496, 789
BstSFI	CTRYAG	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	178, 704
BstYI	RGATCY	2 cut(s)	178, 704
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	4 cut(s)	21, 215, 340, 794
BtgI	CCRYGG	2 cut(s)	320, 849
BtsCI	GGATG	3 cut(s)	296, 697, 845
BtsI	GCAGTG	2 cut(s)	81, 761
BtsIMutI	CAGTG	4 cut(s)	81, 450, 761, 841
Cac8I	GCNNGC	1 cut(s)	796
CaiI	CAGNNNCTG	1 cut(s)	763
CciI	TCATGA	1 cut(s)	391
Cfr10I	RCCGGY	2 cut(s)	108, 940
Cfr13I	GGNCC	2 cut(s)	19, 111
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	5 cut(s)	59, 321, 392, 613, 850
DdeI	CTNAG	3 cut(s)	129, 442, 606
DpnI	GATC	6 cut(s)	180, 198, 360, 489, 514, 706
DpnII	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	4 cut(s)	15, 286, 320, 849
Eco147I	AGGCCT	2 cut(s)	215, 340
Eco24I	GRGCYC	2 cut(s)	306, 464
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	651, 701
EcoRII	CCWGG	3 cut(s)	340, 496, 789
EcoT14I	CCWWGG	4 cut(s)	15, 286, 320, 849
EcoT38I	GRGCYC	2 cut(s)	306, 464
ErhI	CCWWGG	4 cut(s)	15, 286, 320, 849
FaeI	CATG	5 cut(s)	62, 324, 395, 616, 853
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	5 cut(s)	58, 320, 391, 612, 849
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	303, 704, 832
FriOI	GRGCYC	2 cut(s)	306, 464
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	2 cut(s)	858, 973
GluI	GCNGC	1 cut(s)	134
GsuI	CTGGAG	2 cut(s)	363, 399
HaeIII	GGCC	4 cut(s)	21, 215, 340, 794
HapII	CCGG	2 cut(s)	109, 941
Hin1II	CATG	5 cut(s)	62, 324, 395, 616, 853
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	5 cut(s)	53, 295, 449, 590, 823
HpaII	CCGG	2 cut(s)	109, 941
Hpy166II	GTNNAC	3 cut(s)	475, 832, 839
Hpy188I	TCNGA	8 cut(s)	124, 168, 201, 454, 601, 670, 753, 959
Hpy188III	TCNNGA	3 cut(s)	299, 392, 820
Hpy8I	GTNNAC	3 cut(s)	475, 832, 839
HpyAV	CCTTC	3 cut(s)	73, 80, 256
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4V	TGCA	4 cut(s)	404, 529, 586, 766
HpyF3I	CTNAG	3 cut(s)	129, 442, 606
Hsp92II	CATG	5 cut(s)	62, 324, 395, 616, 853
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
LmnI	GCTCC	2 cut(s)	144, 429
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	5 cut(s)	306, 592, 723, 807, 863
MaeI	CTAG	2 cut(s)	858, 973
MalI	GATC	6 cut(s)	180, 198, 360, 489, 514, 706
MboI	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
MboII	GAAGA	4 cut(s)	50, 62, 694, 762
MfeI	CAATTG	3 cut(s)	552, 635, 872
MflI	RGATCY	2 cut(s)	178, 704
MhlI	GDGCHC	2 cut(s)	306, 464
MlyI	GAGTC	3 cut(s)	62, 304, 832
MmeI	TCCRAC	2 cut(s)	207, 544
MnlI	CCTC	8 cut(s)	56, 135, 223, 226, 271, 591, 636, 922
MseI	TTAA	2 cut(s)	153, 813
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	2 cut(s)	109, 941
MspR9I	CCNGG	3 cut(s)	342, 498, 791
MunI	CAATTG	3 cut(s)	552, 635, 872
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	3 cut(s)	342, 498, 791
NcoI	CCATGG	2 cut(s)	320, 849
NdeII	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
NlaIII	CATG	5 cut(s)	62, 324, 395, 616, 853
PagI	TCATGA	1 cut(s)	391
PceI	AGGCCT	2 cut(s)	215, 340
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	449, 590
PinAI	ACCGGT	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	3 cut(s)	61, 303, 831
PpsI	GAGTC	3 cut(s)	61, 303, 831
PshBI	ATTAAT	2 cut(s)	153, 813
Psp6I	CCWGG	3 cut(s)	340, 496, 789
PspGI	CCWGG	3 cut(s)	340, 496, 789
PspPI	GGNCC	2 cut(s)	19, 111
PstI	CTGCAG	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	178, 704
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	153, 813
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	6 cut(s)	178, 196, 358, 487, 512, 704
Sau96I	GGNCC	2 cut(s)	19, 111
SchI	GAGTC	3 cut(s)	62, 304, 832
ScrFI	CCNGG	3 cut(s)	342, 498, 791
SduI	GDGCHC	2 cut(s)	306, 464
SetI	ASST	8 cut(s)	13, 84, 234, 267, 499, 508, 583, 974
SfaNI	GCATC	5 cut(s)	306, 592, 723, 807, 863
SfcI	CTRYAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	366, 718, 732
SmoI	CTYRAG	3 cut(s)	366, 718, 732
SseBI	AGGCCT	2 cut(s)	215, 340
SsiI	CCGC	1 cut(s)	952
SspMI	CTAG	2 cut(s)	858, 973
StuI	AGGCCT	2 cut(s)	215, 340
StyD4I	CCNGG	3 cut(s)	340, 496, 789
StyI	CCWWGG	4 cut(s)	15, 286, 320, 849
TaaI	ACNGT	1 cut(s)	836
TaqI	TCGA	2 cut(s)	511, 826
TfiI	GAWTC	2 cut(s)	449, 590
Tru1I	TTAA	2 cut(s)	153, 813
Tru9I	TTAA	2 cut(s)	153, 813
TscAI	CASTG	4 cut(s)	81, 450, 768, 841
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	45, 63, 389, 708
TspRI	CASTG	4 cut(s)	81, 450, 768, 841
VpaK11BI	GGWCC	1 cut(s)	111
VspI	ATTAAT	2 cut(s)	153, 813
XapI	RAATTY	4 cut(s)	32, 67, 268, 349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	2 cut(s)	858, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.