Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000216

Physical Location & Seq

Genomic Coordinates Forward (+)

35332352 .. 35336229

Gene Structure 3878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGAAGGCTTCCAAGGGTAACCATGATGAGTTTGAAGACGATGATGAGGAGAATCATGCAGGGAGAGGAGAAGGGCAAGGGAGGGAGAAGAACCGGTTGAAACATTCCGAAACGGAGCAGAGAAGGAGGAGCAAGATTAACGAGAGATTTCAAAAGTTGAGAGAGATCATACCCGAAAATGATCAGAAAAGAGATAAGGCTTCATTCTTGTTGGAGGTTATAGAGTATATACAGTTTTTGCATGAGAAGATAAACTTGTATGAGGGTTCATACCAAAAATGGAGTCCAGAGCCAACAAAATTGACCCCATGGAAAAGTCATCATAATAGGCTTGGAGAAAATTTTGCAGATCACTCTCAAGGCATGAACAATGGTTCTGGTCAGGAGAATAATGTTGTTGTCTCCCCCGCGATGCTCACCAATGCACAAAACTCAGTGGAATCTGACTTGGACTCTGCTGCTGTATACAAAGCACTAGATCACATTCGTGGGCTAGCTACTCCATCCATTCCTAATATGAACCAGCAAAACATCTTTGACACTATTGAGAGTTTTGGAGCTCCCACACAACCGTTGCAAGAATCTAATTCTGATGCTGAGAACACGGCTTCTCAATCCCAATACCAATTGTGGCCGGGTATTACGTCAACAATGGTTACAGACAGTAAACTTAATAGGCAGGATGAAAGTAAAACGGTTAGCATCTCAAGTGCCTACTCTCAAGGGGTTTTGAATAATCTGACCCTGTCACTGCGATCCTCTGGTGTGGACTTGTCCCAGGCCAGCATCAACGTTGAACTTGATGTTGGAAATCGAGCAGGCGGTGGCCTGAAATCAATGGCATCTAGTTCACAGGCTCATCTCAGACAATGCTTGAACAACCAAATGATGACGCATTCTCAAGTTAGCAGCTATAACGAGAACTTTGAACAAGCTCATAAGCGATTTAGAACAGGAGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

323

Amino Acids

36.06

Weight (kDa)

5.7

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	33 - 81	7.4e-16	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38860 AT5G38860
fragaria_vesca	FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica	MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica	Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis	pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis	RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata	RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora	Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa	Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha	Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana	Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	413
AciI	CCGC	2 cut(s)	411, 825
AclI	AACGTT	1 cut(s)	795
AclWI	GGATC	1 cut(s)	753
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	343
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	7 cut(s)	38, 103, 155, 736, 800, 880, 932
AjnI	CCWGG	1 cut(s)	780
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	5 cut(s)	500, 563, 915, 938, 966
AluI	AGCT	5 cut(s)	500, 563, 915, 938, 966
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	3 cut(s)	635, 783, 829
ApeKI	GCWGC	2 cut(s)	461, 912
ApoI	RAATTY	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AsiGI	ACCGGT	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	412
AsuNHI	GCTAGC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	448, 924
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	1 cut(s)	624
BciT130I	CCWGG	1 cut(s)	782
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	4 cut(s)	479, 497, 849, 967
BisI	GCNGC	2 cut(s)	462, 913
BlsI	GCNGC	2 cut(s)	463, 914
Bme1390I	CCNGG	2 cut(s)	639, 782
BmrFI	CCNGG	2 cut(s)	639, 782
BmsI	GCATC	5 cut(s)	405, 586, 714, 798, 854
BmtI	GCTAGC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	45
BpuEI	CTTGAG	4 cut(s)	345, 694, 708, 888
BpuMI	CCSGG	1 cut(s)	639
BsaJI	CCNNGG	3 cut(s)	15, 311, 780
BsaWI	WCCGGW	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	3 cut(s)	15, 311, 780
BseGI	GGATG	2 cut(s)	506, 691
BseMII	CTCAG	3 cut(s)	450, 591, 880
BseRI	GAGGAG	3 cut(s)	65, 84, 145
BseXI	GCAGC	2 cut(s)	448, 924
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	3 cut(s)	637, 785, 831
BshTI	ACCGGT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	97, 638
BslFI	GGGAC	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	3 cut(s)	637, 785, 831
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	5 cut(s)	168, 184, 352, 481, 758
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	2 cut(s)	411, 825
BspANI	GGCC	3 cut(s)	637, 785, 831
BspCNI	CTCAG	3 cut(s)	449, 592, 879
BspFNI	CGCG	1 cut(s)	413
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	753
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	15, 311, 780
BssMI	GATC	5 cut(s)	168, 184, 352, 481, 758
BssNAI	GTATAC	1 cut(s)	469
BssT1I	CCWWGG	2 cut(s)	15, 311
Bst1107I	GTATAC	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	4 cut(s)	237, 576, 668, 700
BstC8I	GCNNGC	3 cut(s)	498, 787, 823
BstDEI	CTNAG	3 cut(s)	436, 600, 866
BstDSI	CCRYGG	1 cut(s)	311
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	506, 691
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	5 cut(s)	171, 187, 355, 484, 761
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	5 cut(s)	168, 184, 352, 481, 758
BstNI	CCWGG	1 cut(s)	782
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	637, 780
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	448, 924
BstV2I	GAAGAC	1 cut(s)	45
BstZ17I	GTATAC	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	637, 785, 831
BtgI	CCRYGG	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	506, 691
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	2 cut(s)	444, 752
Cac8I	GCNNGC	3 cut(s)	498, 787, 823
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	1 cut(s)	904
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	5 cut(s)	26, 59, 245, 312, 367
DdeI	CTNAG	3 cut(s)	436, 600, 866
DpnI	GATC	5 cut(s)	170, 186, 354, 483, 760
DpnII	GATC	5 cut(s)	168, 184, 352, 481, 758
EaeI	YGGCCR	1 cut(s)	635
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	15, 311
Eco24I	GRGCYC	1 cut(s)	565
Eco53kI	GAGCTC	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	2 cut(s)	15, 311
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	2 cut(s)	15, 311
FaeI	CATG	5 cut(s)	29, 62, 248, 315, 370
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	5 cut(s)	25, 58, 244, 311, 366
FauI	CCCGC	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	2 cut(s)	462, 913
FokI	GGATG	2 cut(s)	493, 698
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	462, 913
FspBI	CTAG	4 cut(s)	479, 497, 849, 967
GluI	GCNGC	2 cut(s)	462, 913
HaeIII	GGCC	3 cut(s)	637, 785, 831
HapII	CCGG	2 cut(s)	97, 638
HgaI	GACGC	1 cut(s)	904
Hin1II	CATG	5 cut(s)	29, 62, 248, 315, 370
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	5 cut(s)	55, 286, 443, 455, 584
HpaII	CCGG	2 cut(s)	97, 638
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	5 cut(s)	469, 651, 671, 772, 854
Hpy188I	TCNGA	6 cut(s)	112, 189, 448, 595, 744, 869
Hpy188III	TCNNGA	2 cut(s)	290, 386
Hpy8I	GTNNAC	5 cut(s)	469, 651, 671, 772, 854
HpyAV	CCTTC	2 cut(s)	68, 120
HpyCH4III	ACNGT	4 cut(s)	237, 576, 668, 700
HpyCH4IV	ACGT	2 cut(s)	647, 795
HpyCH4V	TGCA	5 cut(s)	62, 244, 350, 428, 580
HpyF3I	CTNAG	3 cut(s)	436, 600, 866
HpySE526I	ACGT	2 cut(s)	647, 795
Hsp92II	CATG	5 cut(s)	29, 62, 248, 315, 370
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	168, 184, 352, 481, 758
LmnI	GCTCC	4 cut(s)	118, 132, 560, 568
Lsp1109I	GCAGC	2 cut(s)	448, 924
LweI	GCATC	5 cut(s)	405, 586, 714, 798, 854
MaeI	CTAG	4 cut(s)	479, 497, 849, 967
MaeII	ACGT	2 cut(s)	647, 795
MaeIII	GTNAC	3 cut(s)	20, 658, 750
MalI	GATC	5 cut(s)	170, 186, 354, 483, 760
MboI	GATC	5 cut(s)	168, 184, 352, 481, 758
MboII	GAAGA	3 cut(s)	50, 103, 262
MfeI	CAATTG	1 cut(s)	629
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	4 cut(s)	302, 343, 589, 629
MlyI	GAGTC	2 cut(s)	295, 449
MmeI	TCCRAC	2 cut(s)	195, 790
MnlI	CCTC	7 cut(s)	43, 62, 78, 123, 211, 259, 772
MseI	TTAA	2 cut(s)	141, 675
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	2 cut(s)	97, 638
MspR9I	CCNGG	2 cut(s)	639, 782
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	898
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	1 cut(s)	413
NciI	CCSGG	1 cut(s)	639
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	5 cut(s)	168, 184, 352, 481, 758
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	5 cut(s)	29, 62, 248, 315, 370
NmuCI	GTSAC	1 cut(s)	750
OliI	CACNNNNGTG	1 cut(s)	489
PctI	GAATGC	1 cut(s)	898
PfeI	GAWTC	3 cut(s)	55, 443, 584
PflFI	GACNNNGTC	1 cut(s)	748
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	463, 914
PleI	GAGTC	2 cut(s)	294, 449
PpsI	GAGTC	2 cut(s)	294, 449
Psp124BI	GAGCTC	1 cut(s)	565
Psp1406I	AACGTT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	780
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	780
PsyI	GACNNNGTC	1 cut(s)	748
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	141, 675
SatI	GCNGC	2 cut(s)	462, 913
Sau3AI	GATC	5 cut(s)	168, 184, 352, 481, 758
SchI	GAGTC	2 cut(s)	295, 449
ScrFI	CCNGG	2 cut(s)	639, 782
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	8 cut(s)	222, 502, 565, 650, 798, 917, 940, 968
SfaNI	GCATC	5 cut(s)	405, 586, 714, 798, 854
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	4 cut(s)	360, 709, 723, 903
SmoI	CTYRAG	4 cut(s)	360, 709, 723, 903
Sse9I	AATT	4 cut(s)	302, 343, 589, 629
SsiI	CCGC	2 cut(s)	411, 825
SspMI	CTAG	4 cut(s)	479, 497, 849, 967
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	2 cut(s)	637, 780
StyI	CCWWGG	2 cut(s)	15, 311
TaaI	ACNGT	4 cut(s)	237, 576, 668, 700
TaiI	ACGT	2 cut(s)	650, 798
TaqI	TCGA	1 cut(s)	817
TasI	AATT	4 cut(s)	302, 343, 589, 629
TfiI	GAWTC	3 cut(s)	55, 443, 584
Tru1I	TTAA	2 cut(s)	141, 675
Tru9I	TTAA	2 cut(s)	141, 675
TscAI	CASTG	2 cut(s)	444, 759
TseFI	GTSAC	1 cut(s)	750
TseI	GCWGC	2 cut(s)	461, 912
Tsp45I	GTSAC	1 cut(s)	750
TspDTI	ATGAA	5 cut(s)	195, 261, 383, 536, 702
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	2 cut(s)	444, 759
Tth111I	GACNNNGTC	1 cut(s)	748
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	4 cut(s)	479, 497, 849, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.