Rmu_sc0030723.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030723.1
OG0000216
Physical Location & Seq
Reverse (-)
552 .. 1400
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030723.1_g000001.1.cds

Sequence Viewer

Length: 849 bp
atgcaactggttactcttcctccaatccctgcatgccacgagtttgtgccagtgggattcatatgcgagccctactataattatgaagaggaaggtggggatcatcgaaaagaacaaaagatcaatattaatggtgattataggtgcaaggttgtgagagtaattccttcaaaaataacttcttttgacattaccattcaagtcttctcttctgagatcggggaatggagagagtcagttgtatcatctcctacagacctttcctcgtatatttttgatcggaatattagctttggtaacaatggaatgatatattgggggactcttgatggtgatctcattgggttgggcccctttgtgaacaacaacaatagcagttctagtgatcagtatcagtgtcgtttgattgaatttgacagtattgtgaaggagaatttcacattggatttcgtaggtgtgtaccaaggatttctgcgcatgtgcgactacaactttgacagttgttggttgcttgttttggagctgtctgaagaagaacatgagcagctggttgtcaatggacttggaaaatgtggtttggaacatgggaaacgttattcacttcccccaaaaatgattcctggtgatccagatgggaatgttgaattgctaacttttgacccaaataatggtgatatcctttatctacgcataaatggagaaatcatcaagtgcaacattcgtacaggaaagtggtcaaagatggttgggacgaatatgctaactgatttagacttcttcccactagtgctcccgtggtggcctacaccagttccgagactaccagattatcagcatgggcagatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

282

Amino Acids

32.17

Weight (kDa)

4.65

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 668
AclI AACGTT 1 cut(s) 592
AclWI GGATC 2 cut(s) 108, 620
AcsI RAATTY 2 cut(s) 410, 433
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 2 cut(s) 461, 724
AfiI CCNNNNNNNGG 1 cut(s) 668
AgsI TTSAA 4 cut(s) 171, 200, 410, 644
AhlI ACTAGT 1 cut(s) 784
AjnI CCWGG 1 cut(s) 619
AjuI GAANNNNNNNTTGG 4 cut(s) 298, 330, 425, 457
AluBI AGCT 3 cut(s) 291, 523, 547
AluI AGCT 3 cut(s) 291, 523, 547
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 1 cut(s) 811
AlwI GGATC 2 cut(s) 108, 620
AoxI GGCC 2 cut(s) 349, 800
ApaI GGGCCC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 2 cut(s) 410, 433
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 349, 350
AsuHPI GGTGA 4 cut(s) 146, 344, 635, 683
BaeGI GKGCMC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 72, 353
BauI CACGAG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 1 cut(s) 556
BccI CCATC 3 cut(s) 323, 626, 736
BciT130I CCWGG 1 cut(s) 621
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 811
BcuI ACTAGT 1 cut(s) 784
BfaI CTAG 2 cut(s) 381, 785
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 545
BlsI GCNGC 1 cut(s) 546
Bme1390I CCNGG 1 cut(s) 621
BmgT120I GGNCC 2 cut(s) 349, 350
BmiI GGNNCC 2 cut(s) 351, 352
BmrFI CCNGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 196
BsaBI GATNNNNATC 2 cut(s) 333, 390
BsaJI CCNNGG 2 cut(s) 463, 794
BsaXI ACNNNNNCTCC 3 cut(s) 34, 774, 804
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse1I ACTGG 3 cut(s) 12, 50, 809
Bse8I GATNNNNATC 2 cut(s) 333, 390
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 463, 794
BseJI GATNNNNATC 2 cut(s) 333, 390
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 12, 50, 809
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 1 cut(s) 556
BshFI GGCC 2 cut(s) 351, 802
BsiHKAI GWGCWC 1 cut(s) 792
BslFI GGGAC 2 cut(s) 334, 763
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 811
BsmFI GGGAC 2 cut(s) 334, 763
BsnI GGCC 2 cut(s) 351, 802
Bsp120I GGGCCC 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 72, 353, 792
Bsp143I GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
BspANI GGCC 2 cut(s) 351, 802
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 351, 352
BspPI GGATC 2 cut(s) 108, 620
BsrI ACTGG 3 cut(s) 12, 50, 809
BssECI CCNNGG 2 cut(s) 463, 794
BssMI GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
BssSI CACGAG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 419, 500
Bst6I CTCTTC 3 cut(s) 21, 81, 214
BstC8I GCNNGC 2 cut(s) 34, 68
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 794
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 7 cut(s) 103, 123, 219, 280, 337, 388, 628
BstMAI GTCTC 1 cut(s) 811
BstMBI GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 2 cut(s) 36, 481
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 351, 802
BtgI CCRYGG 1 cut(s) 794
BtsIMutI CAGTG 2 cut(s) 57, 401
Cac8I GCNNGC 2 cut(s) 34, 68
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 349, 350
Csp6I GTAC 2 cut(s) 460, 723
CviAII CATG 5 cut(s) 33, 478, 539, 584, 836
CviJI RGCY 6 cut(s) 70, 291, 351, 523, 547, 802
CviKI_1 RGCY 6 cut(s) 70, 291, 351, 523, 547, 802
CviQI GTAC 2 cut(s) 460, 723
DdeI CTNAG 1 cut(s) 213
DpnI GATC 7 cut(s) 102, 122, 218, 279, 336, 387, 627
DpnII GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
Eam1104I CTCTTC 3 cut(s) 21, 81, 214
EarI CTCTTC 3 cut(s) 21, 81, 214
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 2 cut(s) 72, 353
Eco32I GATATC 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 619
EcoRV GATATC 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 72, 353
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 5 cut(s) 36, 481, 542, 587, 839
FaqI GGGAC 2 cut(s) 334, 763
FatI CATG 5 cut(s) 32, 477, 538, 583, 835
FauNDI CATATG 1 cut(s) 62
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 545
FriOI GRGCYC 2 cut(s) 72, 353
Fsp4HI GCNGC 1 cut(s) 545
FspBI CTAG 2 cut(s) 381, 785
FspI TGCGCA 1 cut(s) 476
GlaI GCGC 1 cut(s) 476
GluI GCNGC 1 cut(s) 545
HaeIII GGCC 2 cut(s) 351, 802
HhaI GCGC 1 cut(s) 477
Hin1II CATG 5 cut(s) 36, 481, 542, 587, 839
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 4 cut(s) 57, 233, 322, 616
HphI GGTGA 4 cut(s) 146, 344, 635, 683
Hpy166II GTNNAC 2 cut(s) 361, 460
Hpy188I TCNGA 4 cut(s) 214, 282, 529, 816
Hpy188III TCNNGA 2 cut(s) 326, 629
Hpy8I GTNNAC 2 cut(s) 361, 460
HpyAV CCTTC 3 cut(s) 86, 177, 421
HpyCH4III ACNGT 2 cut(s) 419, 500
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 4 cut(s) 4, 32, 147, 714
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 5 cut(s) 36, 481, 542, 587, 839
HspAI GCGC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
LmnI GCTCC 2 cut(s) 520, 795
LpnPI CCDG 9 cut(s) 42, 63, 533, 606, 633, 642, 711, 822, 837
Lsp1109I GCAGC 1 cut(s) 556
MaeI CTAG 2 cut(s) 381, 785
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 2 cut(s) 10, 296
MalI GATC 7 cut(s) 102, 122, 218, 279, 336, 387, 627
MboI GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
MboII GAAGA 7 cut(s) 8, 98, 196, 201, 542, 545, 769
MhlI GDGCHC 3 cut(s) 72, 353, 792
MluCI AATT 5 cut(s) 79, 162, 410, 433, 644
MlyI GAGTC 2 cut(s) 242, 316
MnlI CCTC 3 cut(s) 30, 82, 274
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 547
MspR9I CCNGG 1 cut(s) 621
MvaI CCWGG 1 cut(s) 621
NdeI CATATG 1 cut(s) 62
NdeII GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
NlaIII CATG 5 cut(s) 36, 481, 542, 587, 839
NlaIV GGNNCC 2 cut(s) 351, 352
NsbI TGCGCA 1 cut(s) 476
NspI RCATGY 2 cut(s) 36, 481
PaeI GCATGC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 57, 616
PflMI CCANNNNNTGG 1 cut(s) 668
PkrI GCNGC 1 cut(s) 546
PleI GAGTC 2 cut(s) 241, 316
PpsI GAGTC 2 cut(s) 241, 316
PshBI ATTAAT 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 2 cut(s) 351, 352
PspOMI GGGCCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 349, 350
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 2 cut(s) 461, 724
RsaNI GTAC 2 cut(s) 460, 723
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 545
Sau3AI GATC 7 cut(s) 100, 120, 216, 277, 334, 385, 625
Sau96I GGNCC 2 cut(s) 349, 350
SchI GAGTC 2 cut(s) 242, 316
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 3 cut(s) 72, 353, 792
SetI ASST 9 cut(s) 97, 146, 153, 261, 293, 457, 525, 549, 595
SfcI CTRYAG 1 cut(s) 252
SpeI ACTAGT 1 cut(s) 784
SphI GCATGC 1 cut(s) 36
Sse9I AATT 5 cut(s) 79, 162, 410, 433, 644
SspI AATATT 2 cut(s) 127, 286
SspMI CTAG 2 cut(s) 381, 785
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 419, 500
TaiI ACGT 1 cut(s) 595
TaqI TCGA 1 cut(s) 106
TasI AATT 5 cut(s) 79, 162, 410, 433, 644
TfiI GAWTC 2 cut(s) 57, 616
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 2 cut(s) 57, 401
TseI GCWGC 1 cut(s) 544
TspDTI ATGAA 2 cut(s) 49, 99
TspRI CASTG 2 cut(s) 57, 401
Van91I CCANNNNNTGG 1 cut(s) 668
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 2 cut(s) 410, 433
XceI RCATGY 2 cut(s) 36, 481
XspI CTAG 2 cut(s) 381, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.