Rh6CG350700

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000216
Physical Location & Seq
Reverse (-)
54051786 .. 54052127
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG350700.1

Sequence Viewer

Length: 342 bp
ATGAAAAGTGATGCTACTCTTAGATCCCAATCTCTAGGAGCAGCCTCTCATCAGTCTCTCCCAAACACAATATGCTTGAACAAGATTGATGATCTCCCAGAGTTTTTATTGGTTGAAATCCTTTGTCGACTTCCATGCAAGTTTGGTTTACGATGCAAGTGTGTGTGCAAATCTTGGTCGACTCTCATCTCCCAGCCTTATTTTGAAAGCCACCGTGCTCTATATCTTCGAAACAACTGTGACAATGAGCAAGTGTGTGTTGTTGAAATTTCATTCCTTGCTGATGGACATTTTAGAGAGCAGAGTTATTTACGATTTCCAAGCAGTCTCATCCGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

113

Amino Acids

12.89

Weight (kDa)

8.14

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 69 1.6e-07 F-box domain
F-box-like PF12937 29 - 67 3.2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 127, 179
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 267
AgsI TTSAA 4 cut(s) 79, 116, 206, 266
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 2 cut(s) 60, 332
AlwI GGATC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 335
AsuII TTCGAA 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 60, 332
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 334
BsmAI GTCTC 2 cut(s) 60, 332
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 2 cut(s) 23, 91
BspPI GGATC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 2 cut(s) 23, 91
Bst4CI ACNGT 2 cut(s) 215, 239
BstBI TTCGAA 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 2 cut(s) 26, 94
BstMAI GTCTC 2 cut(s) 60, 332
BstMBI GATC 2 cut(s) 23, 91
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BtsCI GGATG 1 cut(s) 330
CviAII CATG 1 cut(s) 135
CviJI RGCY 3 cut(s) 44, 196, 210
CviKI_1 RGCY 3 cut(s) 44, 196, 210
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 25, 93
DpnII GATC 2 cut(s) 23, 91
FaeI CATG 1 cut(s) 138
FaiI YATR 3 cut(s) 73, 136, 223
FatI CATG 1 cut(s) 134
FblI GTMKAC 2 cut(s) 127, 179
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 196
HapII CCGG 1 cut(s) 334
Hin1II CATG 1 cut(s) 138
HincII GTYRAC 2 cut(s) 128, 180
HindII GTYRAC 2 cut(s) 128, 180
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 128, 149, 180
Hpy8I GTNNAC 3 cut(s) 128, 149, 180
HpyCH4III ACNGT 2 cut(s) 215, 239
HpyCH4V TGCA 3 cut(s) 138, 156, 168
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 1 cut(s) 138
Kzo9I GATC 2 cut(s) 23, 91
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 2 cut(s) 111, 206
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 143
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 25, 93
MboI GATC 2 cut(s) 23, 91
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 1 cut(s) 55
MseI TTAA 1 cut(s) 340
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 335
NdeII GATC 2 cut(s) 23, 91
NlaIII CATG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 239
NspV TTCGAA 1 cut(s) 229
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 23
SalI GTCGAC 2 cut(s) 126, 178
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 23, 91
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 229
Sse9I AATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 215, 239
TaqI TCGA 3 cut(s) 127, 179, 229
TasI AATT 1 cut(s) 267
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 17, 261
XapI RAATTY 1 cut(s) 267
XmiI GTMKAC 2 cut(s) 127, 179
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.