Rh6AG338400

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000216
Physical Location & Seq
Reverse (-)
53865246 .. 53865647
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG338400.1

Sequence Viewer

Length: 402 bp
ATGTGCCGGCTGTATACTCTGACACGTTTCATTCTTTTTGTGTGGGAGCTGAAAGAAGATGAGGTGGATGGAGTTGGAGGCAAAAAGATGAAATGGTGTTTAAAGGAGAGGATCTTCCTGGACCAAATTAAGTCGGAATATATGGTGCCTGACCCCTACCGGCTTCTGGCTTTGGACCCAAATGATGAAGACATAATGTACCTGCTACGGAGACCTAGCAGCTCCGATCCAAAAGACATTGTTAAGTGCAATATTCGTACAGAAACGCTAATTGATATCTCTCCAAAGTTGCCATTAAAGACAGATATAGAGGCATTTCCATTTATGCTCTCATGGTGGCGGTGGCCAACACCAGTTCCTAAATTAGACCATCACAACAACAGCAGCTGCCCACCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

133

Amino Acids

15.77

Weight (kDa)

6.11

Isoelectric Point (pI)

61.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 14
AciI CCGC 2 cut(s) 340, 395
AclWI GGATC 2 cut(s) 119, 221
AcoI YGGCCR 1 cut(s) 344
AfaI GTAC 2 cut(s) 200, 259
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 49, 222, 387
AluI AGCT 3 cut(s) 49, 222, 387
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 2 cut(s) 119, 221
AlwNI CAGNNNCTG 1 cut(s) 387
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 3 cut(s) 219, 384, 387
AspS9I GGNCC 2 cut(s) 121, 175
AvaII GGWCC 2 cut(s) 121, 175
BalI TGGCCA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 231, 374, 396
BccI CCATC 2 cut(s) 62, 378
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 3 cut(s) 220, 385, 388
BlsI GCNGC 3 cut(s) 221, 386, 389
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 121, 175
BmgT120I GGNCC 2 cut(s) 121, 175
BmiI GGNNCC 2 cut(s) 147, 177
BmrFI CCNGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 2 cut(s) 6, 159
Bse1I ACTGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 353
BseXI GCAGC 3 cut(s) 231, 374, 396
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 7, 160
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 111, 226
BspACI CCGC 2 cut(s) 340, 395
BspANI GGCC 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 147, 177
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 2 cut(s) 119, 221
BspT107I GGYRCC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 205
BsrFI RCCGGY 2 cut(s) 6, 159
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 2 cut(s) 6, 159
BssMI GATC 2 cut(s) 111, 226
BssNAI GTATAC 1 cut(s) 15
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 8
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 114, 229
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 2 cut(s) 111, 226
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 231, 374, 396
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BstZ17I GTATAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 387
Cfr10I RCCGGY 2 cut(s) 6, 159
Cfr13I GGNCC 2 cut(s) 121, 175
Csp6I GTAC 2 cut(s) 199, 258
CviAII CATG 1 cut(s) 333
CviJI RGCY 7 cut(s) 10, 49, 163, 170, 222, 346, 387
CviKI_1 RGCY 7 cut(s) 10, 49, 163, 170, 222, 346, 387
CviQI GTAC 2 cut(s) 199, 258
DpnI GATC 2 cut(s) 113, 228
DpnII GATC 2 cut(s) 111, 226
DraI TTTAAA 1 cut(s) 102
EaeI YGGCCR 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 205
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 121, 175
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 277
FaeI CATG 1 cut(s) 336
FaiI YATR 7 cut(s) 15, 141, 143, 194, 308, 326, 334
FatI CATG 1 cut(s) 332
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 220, 385, 388
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 220, 385, 388
FspBI CTAG 1 cut(s) 216
GluI GCNGC 3 cut(s) 220, 385, 388
HaeIII GGCC 1 cut(s) 346
HapII CCGG 2 cut(s) 7, 160
Hin1II CATG 1 cut(s) 336
HpaII CCGG 2 cut(s) 7, 160
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 21, 136, 226
Hpy8I GTNNAC 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 1 cut(s) 336
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 111, 226
LmnI GCTCC 2 cut(s) 46, 227
LpnPI CCDG 8 cut(s) 20, 104, 131, 152, 162, 173, 215, 366
Lsp1109I GCAGC 3 cut(s) 231, 374, 396
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 25
MalI GATC 2 cut(s) 113, 228
MboI GATC 2 cut(s) 111, 226
MboII GAAGA 3 cut(s) 68, 106, 200
MflI RGATCY 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 3 cut(s) 126, 270, 362
MluNI TGGCCA 1 cut(s) 346
MmeI TCCRAC 2 cut(s) 55, 114
MnlI CCTC 4 cut(s) 55, 71, 102, 304
Mox20I TGGCCA 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 6
MscI TGGCCA 1 cut(s) 346
MseI TTAA 4 cut(s) 101, 129, 243, 296
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 387
MspI CCGG 2 cut(s) 7, 160
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 8
NdeII GATC 2 cut(s) 111, 226
NgoMIV GCCGGC 1 cut(s) 6
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 147, 177
PdiI GCCGGC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 3 cut(s) 221, 386, 389
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 147, 177
PspPI GGNCC 2 cut(s) 121, 175
PstNI CAGNNNCTG 1 cut(s) 387
PsuI RGATCY 1 cut(s) 111
PvuII CAGCTG 1 cut(s) 387
RsaI GTAC 2 cut(s) 200, 259
RsaNI GTAC 2 cut(s) 199, 258
SaqAI TTAA 4 cut(s) 101, 129, 243, 296
SatI GCNGC 3 cut(s) 220, 385, 388
Sau3AI GATC 2 cut(s) 111, 226
Sau96I GGNCC 2 cut(s) 121, 175
ScrFI CCNGG 1 cut(s) 119
SetI ASST 7 cut(s) 28, 51, 66, 204, 217, 224, 389
SinI GGWCC 2 cut(s) 121, 175
Sse9I AATT 3 cut(s) 126, 270, 362
SsiI CCGC 2 cut(s) 340, 395
SspI AATATT 1 cut(s) 253
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 28
TasI AATT 3 cut(s) 126, 270, 362
Tru1I TTAA 4 cut(s) 101, 129, 243, 296
Tru9I TTAA 4 cut(s) 101, 129, 243, 296
TseI GCWGC 3 cut(s) 219, 384, 387
TspDTI ATGAA 3 cut(s) 19, 104, 201
TspGWI ACGGA 1 cut(s) 223
VpaK11BI GGWCC 2 cut(s) 121, 175
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.