Rh6CG349100

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000216
Physical Location & Seq
Forward (+)
53957755 .. 53958387
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG349100.1

Sequence Viewer

Length: 633 bp
ATGTTCTCTTCCGAGACTGGTAAATGGATAGAATCAGTTGTCCTATGCCCGCAAAGGTTTAGACCTGCTGATCTCAAGCCCATTACACCAGCCCTTGCTTACGATGGAACCCTGTACTGGTTAGGTCATGGTGGCTTTCTTATTGGGTTGGAGCCTTTCAAGCTCAACCATAACCATCATTGTCGTTTTATTTCCAGGCTTCCAGTATACTTTCGTGAACTTCCCACCGAGTGCCTGGGTGTGTGCTGGGGTTGTGTGAGGTTGTGCCGGTTGTATGTAAATCATTCGACTCTTGATGTCTGGGAGCTGAAAGAAGATGATGATCGTGAGGTGGATGAAGTTGGAGGCAAAATGATGAAATGGTGTTTGAAAGAGAGGGTCATCGTGGACCAAACTTTTTTGCGGAGTCCCGAGCTTCTGGCTTTGGACCCAAATGATGAAGATATATTGTACCTACGATGTTCTAACTACCGTGAGGCAAAGATTGTAACGTACGATATTCGTACAATGAAGGTGATTGACATCTCTCGAAAGTTTCCATGTCCTGATTTTCACATGGATGCCTTTCCATTTGTGCTCCCATGGTGGCAGTGGCCAACCCCAGTTCCTAGACTAGACTGCCACACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

210

Amino Acids

24.72

Weight (kDa)

5.97

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 2 - 172 1.8e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 207
AciI CCGC 2 cut(s) 50, 403
AcoI YGGCCR 1 cut(s) 593
AdeI CACNNNGTG 1 cut(s) 231
AfaI GTAC 4 cut(s) 116, 452, 494, 505
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 160, 370
AjnI CCWGG 2 cut(s) 194, 234
AluBI AGCT 3 cut(s) 163, 307, 415
AluI AGCT 3 cut(s) 163, 307, 415
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 1 cut(s) 8
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 1 cut(s) 593
AspS9I GGNCC 2 cut(s) 388, 427
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 2 cut(s) 388, 427
BalI TGGCCA 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 579
BccI CCATC 2 cut(s) 98, 183
BciT130I CCWGG 2 cut(s) 196, 236
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 609, 614
BfuAI ACCTGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 196, 236
Bme18I GGWCC 2 cut(s) 388, 427
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 388, 427
BmiI GGNNCC 3 cut(s) 109, 153, 429
BmrFI CCNGG 2 cut(s) 196, 236
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 1 cut(s) 550
BmuI ACTGGG 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 2 cut(s) 321, 521
BsaJI CCNNGG 2 cut(s) 235, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 4 cut(s) 22, 122, 203, 602
Bse8I GATNNNNATC 2 cut(s) 321, 521
BseBI CCWGG 2 cut(s) 196, 236
BseDI CCNNGG 2 cut(s) 235, 581
BseGI GGATG 2 cut(s) 340, 565
BseJI GATNNNNATC 2 cut(s) 321, 521
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 4 cut(s) 22, 122, 203, 602
BseYI CCCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 595
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 268
BsiWI CGTACG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 2 cut(s) 70, 322
Bsp19I CCATGG 1 cut(s) 581
BspACI CCGC 2 cut(s) 50, 403
BspANI GGCC 1 cut(s) 595
BspLI GGNNCC 3 cut(s) 109, 153, 429
BspMI ACCTGC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 267
BsrI ACTGG 4 cut(s) 22, 122, 203, 602
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 235, 581
BssMI GATC 2 cut(s) 70, 322
BssNAI GTATAC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 581
Bst1107I GTATAC 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 196, 236
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 340, 565
BstKTI GATC 2 cut(s) 73, 325
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 2 cut(s) 70, 322
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 2 cut(s) 196, 236
BstSCI CCNGG 2 cut(s) 194, 234
BstZ17I GTATAC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 2 cut(s) 340, 565
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 1 cut(s) 596
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 388, 427
Csp6I GTAC 4 cut(s) 115, 451, 493, 504
CviAII CATG 4 cut(s) 128, 540, 556, 582
CviQI GTAC 4 cut(s) 115, 451, 493, 504
DpnI GATC 2 cut(s) 72, 324
DpnII GATC 2 cut(s) 70, 322
DraIII CACNNNGTG 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 581
Eco47I GGWCC 2 cut(s) 388, 427
Eco88I CYCGRG 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 194, 234
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 4 cut(s) 131, 543, 559, 585
FaiI YATR 9 cut(s) 46, 129, 171, 208, 276, 446, 541, 557, 583
FaqI GGGAC 1 cut(s) 393
FatI CATG 4 cut(s) 127, 539, 555, 581
FauI CCCGC 1 cut(s) 57
FblI GTMKAC 1 cut(s) 207
FokI GGATG 2 cut(s) 347, 572
FspBI CTAG 2 cut(s) 609, 614
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 268
Hin1II CATG 4 cut(s) 131, 543, 559, 585
HinfI GANTC 3 cut(s) 32, 289, 406
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 3 cut(s) 208, 218, 388
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 6 cut(s) 215, 293, 326, 410, 528, 545
Hpy8I GTNNAC 3 cut(s) 208, 218, 388
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 4 cut(s) 131, 543, 559, 585
Kzo9I GATC 2 cut(s) 70, 322
LmnI GCTCC 3 cut(s) 151, 304, 582
LweI GCATC 1 cut(s) 550
MaeI CTAG 2 cut(s) 609, 614
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 487
MalI GATC 2 cut(s) 72, 324
MboI GATC 2 cut(s) 70, 322
MboII GAAGA 2 cut(s) 326, 452
MhlI GDGCHC 1 cut(s) 579
MlsI TGGCCA 1 cut(s) 595
MluCI AATT 1 cut(s) 628
MluNI TGGCCA 1 cut(s) 595
MlyI GAGTC 2 cut(s) 283, 415
MmeI TCCRAC 2 cut(s) 129, 322
MnlI CCTC 5 cut(s) 252, 322, 338, 369, 469
Mox20I TGGCCA 1 cut(s) 595
MscI TGGCCA 1 cut(s) 595
MseI TTAA 1 cut(s) 631
MslI CAYNNNNRTG 1 cut(s) 558
Msp20I TGGCCA 1 cut(s) 595
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 196, 236
MvaI CCWGG 2 cut(s) 196, 236
MwoI GCNNNNNNNGC 1 cut(s) 160
NcoI CCATGG 1 cut(s) 581
NdeII GATC 2 cut(s) 70, 322
NlaIII CATG 4 cut(s) 131, 543, 559, 585
NlaIV GGNNCC 3 cut(s) 109, 153, 429
PfeI GAWTC 1 cut(s) 32
Pfl23II CGTACG 1 cut(s) 492
PleI GAGTC 2 cut(s) 283, 414
PpsI GAGTC 2 cut(s) 283, 414
Psp6I CCWGG 2 cut(s) 194, 234
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 2 cut(s) 194, 234
PspLI CGTACG 1 cut(s) 492
PspN4I GGNNCC 3 cut(s) 109, 153, 429
PspPI GGNCC 2 cut(s) 388, 427
RsaI GTAC 4 cut(s) 116, 452, 494, 505
RsaNI GTAC 4 cut(s) 115, 451, 493, 504
RseI CAYNNNNRTG 1 cut(s) 558
SaqAI TTAA 1 cut(s) 631
Sau3AI GATC 2 cut(s) 70, 322
Sau96I GGNCC 2 cut(s) 388, 427
SchI GAGTC 2 cut(s) 283, 415
ScrFI CCNGG 2 cut(s) 196, 236
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 1 cut(s) 550
SinI GGWCC 2 cut(s) 388, 427
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 628
SsiI CCGC 2 cut(s) 50, 403
SspMI CTAG 2 cut(s) 609, 614
StyD4I CCNGG 2 cut(s) 194, 234
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 287, 529
TasI AATT 1 cut(s) 628
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 631
Tru9I TTAA 1 cut(s) 631
TscAI CASTG 1 cut(s) 596
TspDTI ATGAA 4 cut(s) 351, 371, 453, 524
TspRI CASTG 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 388, 427
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 588
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 2 cut(s) 609, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.