Prupe.3G059500_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000216
Physical Location & Seq
Reverse (-)
4220873 .. 4223329
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G059500.1

Sequence Viewer

Length: 1290 bp
ATGGATATTCATGATCTCCCTGAGCTTGTGTTGGTTGAAATACTTTGTCGAGTTCCTTGTGGTAAATTCATTTTTCAATGCAAGTGTGTGTGCAAGCGTTGGCTCACTCTCATCTCTGCTCCTTATTTTATTGACCGCTTTTTGCGTCTCCAAAGTCATAGGAAAACACCTACTGTACGCACTTTGATAAGCCGCAATGCAGAGGAATTATTTAACAGAGTTTCTTTGTCCGAAGTGTTGACTCCTATGTTGAAAAGACTCGAGAGTTTCGACCATTTGGAAACAGAGCCAGTTGTGGTAGGGGCTTACAATGACTTGATTTTATGCTGTGATAGCTTGTTTGATCAACACAATTACTACATATGCAATCCATACACCATGCAATGGGTTGCTCTTCCTCCCACCCCTACTCGATGCTATGACATTGTACGAGTGGGATTGATCTGTGATAGTCCCTACTATGAGGAAGACGATCCAAATGGACATGTCATCCAGCTTAATGCCAAGTTTAGGTGCAAGGTTGTGAGAATTCTTCCTCCTGATCGTCAATTTGTATTTGATCATGATGAGTACTGCTTCAATTTTAATGTGGAGATCTTCTCTTTTGAGACTGGCAAATGGAGCGAGTTAGTTGTATCATCCCCACGAGGAATTTCTTATGATTATCTCGATGCTATGGCCTTTTCTTACAATGGAGTGTTGTATTGGTCGGGTCATGATTATGGCTATTTTCTGGTTCTTGGGTTTGATCCGTTCAATGACAATAGCAGTACTAGCACTAGTAGTGGTTGTAGCAATGGTGGTGATATTATTGATCATAAATGTCGTTTCGTGGTATTTGCTATGCCTGTAGCTGACCATTTTGTAGTTGAGTGCCTAGGTGTGTGTGGAGGGTTGTTGCGGATGTGTGACTTTGACTCAGATACAAAAACTCTCTTTGTTTGGGATTTGAAACGACAAGATCATGATTATATGGTCAAGGGAGCTGGCGAACTGTGTTTGAGTAAACACAATGTTTATTCCTTCGACCAAGATATGTATCCGGATGATGCACGAGTCGTTGAGAGGCTATCTTTCGACCCAAATAATGAGGATATTTTTTATCTATATGTGGATGCAGATGTTATAATGTGCAACATTCGTACAAGAAAGTGGTCAAAGATAGTTGAAAAGAGGAAACTCAATAATTTTTATTTCTTCCCGTTCACACTCCCATGGTGGCCAACACCAGTTCCTAGCCTACCACAACATGCCCACCAGCTAGCCCATGGTGGAGAAACTAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

430

Amino Acids

49.72

Weight (kDa)

5.3

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1127
AccB7I CCANNNNNTGG 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 1042
AciI CCGC 3 cut(s) 136, 193, 901
AclWI GGATC 2 cut(s) 467, 743
AcoI YGGCCR 1 cut(s) 1220
AcsI RAATTY 3 cut(s) 65, 528, 651
AfaI GTAC 5 cut(s) 177, 429, 572, 772, 1144
AfiI CCNNNNNNNGG 2 cut(s) 384, 510
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 7 cut(s) 38, 77, 253, 580, 757, 952, 1169
AhlI ACTAGT 1 cut(s) 779
AluBI AGCT 7 cut(s) 25, 336, 496, 854, 986, 1261, 1287
AluI AGCT 7 cut(s) 25, 336, 496, 854, 986, 1261, 1287
Alw26I GTCTC 2 cut(s) 152, 602
AlwI GGATC 2 cut(s) 467, 743
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 1042
AoxI GGCC 2 cut(s) 678, 1220
ApeKI GCWGC 1 cut(s) 1284
ApoI RAATTY 3 cut(s) 65, 528, 651
AspA2I CCTAGG 1 cut(s) 877
AsuHPI GGTGA 1 cut(s) 815
AsuNHI GCTAGC 1 cut(s) 1261
AvaI CYCGRG 1 cut(s) 260
AvrII CCTAGG 1 cut(s) 877
BalI TGGCCA 1 cut(s) 1222
BauI CACGAG 2 cut(s) 645, 1053
BbsI GAAGAC 1 cut(s) 474
BciVI GTATCC 1 cut(s) 1050
BclI TGATCA 3 cut(s) 343, 559, 814
BcoDI GTCTC 2 cut(s) 152, 602
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 7 cut(s) 774, 780, 878, 1236, 1262, 1281, 1288
BfmI CTRYAG 1 cut(s) 849
BfuI GTATCC 1 cut(s) 1050
BglII AGATCT 1 cut(s) 594
BisI GCNGC 2 cut(s) 193, 1285
BlnI CCTAGG 1 cut(s) 877
BlsI GCNGC 2 cut(s) 194, 1286
BmcAI AGTACT 2 cut(s) 572, 772
BmeT110I CYCGRG 1 cut(s) 260
BmsI GCATC 4 cut(s) 404, 661, 1039, 1105
BmtI GCTAGC 1 cut(s) 1265
BpiI GAAGAC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 584, 616
Bpu10I CCTNAGC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 1038
BsaJI CCNNGG 3 cut(s) 877, 1214, 1267
BsaWI WCCGGW 1 cut(s) 1042
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 510
Bse1I ACTGG 3 cut(s) 290, 616, 1229
Bse3DI GCAATG 3 cut(s) 202, 389, 802
Bse8I GATNNNNATC 1 cut(s) 1038
BseAI TCCGGA 1 cut(s) 1042
BseDI CCNNGG 3 cut(s) 877, 1214, 1267
BseGI GGATG 5 cut(s) 489, 638, 909, 1051, 1120
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 2 cut(s) 384, 510
BseMI GCAATG 3 cut(s) 202, 389, 802
BseMII CTCAG 2 cut(s) 12, 933
BseNI ACTGG 3 cut(s) 290, 616, 1229
BshFI GGCC 2 cut(s) 680, 1222
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 1043
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 384, 510
BsmAI GTCTC 2 cut(s) 152, 602
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 2 cut(s) 680, 1222
BsoBI CYCGRG 1 cut(s) 260
Bsp13I TCCGGA 1 cut(s) 1042
Bsp19I CCATGG 2 cut(s) 1214, 1267
BspACI CCGC 3 cut(s) 136, 193, 901
BspANI GGCC 2 cut(s) 680, 1222
BspCNI CTCAG 2 cut(s) 13, 932
BspEI TCCGGA 1 cut(s) 1042
BspHI TCATGA 4 cut(s) 10, 562, 715, 964
BspOI GCTAGC 1 cut(s) 1265
BspPI GGATC 2 cut(s) 467, 743
BspQI GCTCTTC 1 cut(s) 399
BsrDI GCAATG 3 cut(s) 202, 389, 802
BsrI ACTGG 3 cut(s) 290, 616, 1229
BssECI CCNNGG 3 cut(s) 877, 1214, 1267
BssSI CACGAG 2 cut(s) 645, 1053
BssT1I CCWWGG 3 cut(s) 877, 1214, 1267
Bst2BI CACGAG 2 cut(s) 645, 1053
Bst4CI ACNGT 2 cut(s) 175, 996
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 95, 988, 1263
BstDEI CTNAG 2 cut(s) 21, 919
BstDSI CCRYGG 2 cut(s) 1214, 1267
BstF5I GGATG 5 cut(s) 489, 638, 909, 1051, 1120
BstMAI GTCTC 2 cut(s) 152, 602
BstMWI GCNNNNNNNGC 3 cut(s) 333, 621, 774
BstNSI RCATGY 2 cut(s) 488, 1253
BstSFI CTRYAG 1 cut(s) 849
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 594
BstYI RGATCY 1 cut(s) 594
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 2 cut(s) 680, 1222
BtgI CCRYGG 2 cut(s) 1214, 1267
BtsCI GGATG 5 cut(s) 489, 638, 909, 1051, 1120
Cac8I GCNNGC 3 cut(s) 95, 988, 1263
CciI TCATGA 4 cut(s) 10, 562, 715, 964
CseI GACGC 1 cut(s) 134
Csp6I GTAC 5 cut(s) 176, 428, 571, 771, 1143
CviAII CATG 9 cut(s) 11, 379, 485, 563, 716, 965, 1215, 1250, 1268
CviQI GTAC 5 cut(s) 176, 428, 571, 771, 1143
DdeI CTNAG 2 cut(s) 21, 919
EaeI YGGCCR 1 cut(s) 1220
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 3 cut(s) 877, 1214, 1267
Eco88I CYCGRG 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 528
EcoT14I CCWWGG 3 cut(s) 877, 1214, 1267
ErhI CCWWGG 3 cut(s) 877, 1214, 1267
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 9 cut(s) 14, 382, 488, 566, 719, 968, 1218, 1253, 1271
FaqI GGGAC 1 cut(s) 438
FatI CATG 9 cut(s) 10, 378, 484, 562, 715, 964, 1214, 1249, 1267
FauNDI CATATG 1 cut(s) 362
FbaI TGATCA 3 cut(s) 343, 559, 814
Fnu4HI GCNGC 2 cut(s) 193, 1285
FokI GGATG 5 cut(s) 476, 625, 916, 1058, 1127
Fsp4HI GCNGC 2 cut(s) 193, 1285
FspBI CTAG 7 cut(s) 774, 780, 878, 1236, 1262, 1281, 1288
GluI GCNGC 2 cut(s) 193, 1285
HaeIII GGCC 2 cut(s) 680, 1222
HapII CCGG 1 cut(s) 1043
HgaI GACGC 1 cut(s) 134
Hin1II CATG 9 cut(s) 14, 382, 488, 566, 719, 968, 1218, 1253, 1271
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 4 cut(s) 241, 258, 917, 1056
HpaII CCGG 1 cut(s) 1043
HphI GGTGA 1 cut(s) 815
Hpy166II GTNNAC 3 cut(s) 240, 1007, 1206
Hpy188I TCNGA 2 cut(s) 232, 922
Hpy188III TCNNGA 8 cut(s) 11, 262, 539, 563, 668, 716, 965, 1043
Hpy8I GTNNAC 3 cut(s) 240, 1007, 1206
HpyAV CCTTC 1 cut(s) 1033
HpyCH4III ACNGT 2 cut(s) 175, 996
HpyCH4V TGCA 9 cut(s) 81, 93, 200, 366, 382, 516, 1052, 1118, 1134
HpyF10VI GCNNNNNNNGC 3 cut(s) 333, 621, 774
HpyF3I CTNAG 2 cut(s) 21, 919
Hsp92II CATG 9 cut(s) 14, 382, 488, 566, 719, 968, 1218, 1253, 1271
Kpn2I TCCGGA 1 cut(s) 1042
Ksp22I TGATCA 3 cut(s) 343, 559, 814
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 3 cut(s) 124, 621, 983
LweI GCATC 4 cut(s) 404, 661, 1039, 1105
MaeI CTAG 7 cut(s) 774, 780, 878, 1236, 1262, 1281, 1288
MaeIII GTNAC 1 cut(s) 908
MboII GAAGA 5 cut(s) 386, 479, 524, 589, 1189
MflI RGATCY 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 1222
MluCI AATT 8 cut(s) 65, 206, 352, 528, 548, 580, 651, 1186
MluNI TGGCCA 1 cut(s) 1222
MlyI GAGTC 4 cut(s) 235, 252, 911, 1065
MnlI CCTC 9 cut(s) 196, 408, 457, 546, 641, 884, 1059, 1084, 1167
Mox20I TGGCCA 1 cut(s) 1222
MroI TCCGGA 1 cut(s) 1042
MscI TGGCCA 1 cut(s) 1222
MseI TTAA 3 cut(s) 213, 498, 585
MslI CAYNNNNRTG 2 cut(s) 720, 1213
Msp20I TGGCCA 1 cut(s) 1222
MspI CCGG 1 cut(s) 1043
MwoI GCNNNNNNNGC 3 cut(s) 333, 621, 774
NcoI CCATGG 2 cut(s) 1214, 1267
NdeI CATATG 1 cut(s) 362
NheI GCTAGC 1 cut(s) 1261
NlaIII CATG 9 cut(s) 14, 382, 488, 566, 719, 968, 1218, 1253, 1271
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 2 cut(s) 488, 1253
PaeR7I CTCGAG 1 cut(s) 260
PagI TCATGA 4 cut(s) 10, 562, 715, 964
PciI ACATGT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 384
PkrI GCNGC 2 cut(s) 194, 1286
PleI GAGTC 4 cut(s) 235, 252, 911, 1064
PpsI GAGTC 4 cut(s) 235, 252, 911, 1064
PscI ACATGT 1 cut(s) 484
PsiI TTATAA 1 cut(s) 1127
PsuI RGATCY 1 cut(s) 594
RsaI GTAC 5 cut(s) 177, 429, 572, 772, 1144
RsaNI GTAC 5 cut(s) 176, 428, 571, 771, 1143
RseI CAYNNNNRTG 2 cut(s) 720, 1213
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 213, 498, 585
SatI GCNGC 2 cut(s) 193, 1285
ScaI AGTACT 2 cut(s) 572, 772
SchI GAGTC 4 cut(s) 235, 252, 911, 1065
SfaNI GCATC 4 cut(s) 404, 661, 1039, 1105
SfcI CTRYAG 1 cut(s) 849
Sfr274I CTCGAG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 720, 1213
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 8 cut(s) 65, 206, 352, 528, 548, 580, 651, 1186
SsiI CCGC 3 cut(s) 136, 193, 901
SspMI CTAG 7 cut(s) 774, 780, 878, 1236, 1262, 1281, 1288
StyI CCWWGG 3 cut(s) 877, 1214, 1267
TaaI ACNGT 2 cut(s) 175, 996
TaqI TCGA 7 cut(s) 49, 261, 270, 412, 669, 1026, 1077
TasI AATT 8 cut(s) 65, 206, 352, 528, 548, 580, 651, 1186
TatI WGTACW 2 cut(s) 570, 770
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 3 cut(s) 213, 498, 585
Tru9I TTAA 3 cut(s) 213, 498, 585
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 1 cut(s) 1284
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 741
Van91I CCANNNNNTGG 1 cut(s) 384
XapI RAATTY 3 cut(s) 65, 528, 651
XceI RCATGY 2 cut(s) 488, 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 1265
XhoI CTCGAG 1 cut(s) 260
XmaJI CCTAGG 1 cut(s) 877
XspI CTAG 7 cut(s) 774, 780, 878, 1236, 1262, 1281, 1288
ZrmI AGTACT 2 cut(s) 572, 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.