Rroxscaffold_2G00086380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000216
Physical Location & Seq
Reverse (-)
8581906 .. 8582423
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086380.1

Sequence Viewer

Length: 468 bp
ATGAATAATAGTATTGATGATCTTCCTGATGGTGAATTGCTTGAAATCCTTTATCGACTTGCTTGCTATAAGTTTGTTGCTCAATGCAAGCGTGTCTCCAAGCGTTGGTGCAATCTCATGTCCGAATCTTCTTTTATTGGCGACTTTGTGCGTCTCAAAAGTGATAAGCAGTCACCAATTACACATTCTCTGCTGTATTATAGTGGAGTGGAATTCATTGGCAGATTGTCATCTTCCACCAAGCCGCTAACTCCATTGTTCGATAGACTCGTGAGCTTTCACGGTTTGAAAACTCAAGCAGTATTGATCAACGCGATTACTACATCTGCAATCCATCCACAGTCCGATGGGTTCCTCTTCCTCCACCTCCTCAAGTCTACAGGTTCACACGAGCGGGATTCATCTGCGATCTTCCCTACTATAACTGTTGGTCAACAGGCGATCAGGGAGGAAGTAGCATCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

155

Amino Acids

17.32

Weight (kDa)

7.76

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 105
AccBSI CCGCTC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 377
AccII CGCG 1 cut(s) 314
AciI CCGC 2 cut(s) 245, 394
AcsI RAATTY 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 2 cut(s) 44, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 100, 158
ApoI RAATTY 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 44, 165
BauI CACGAG 2 cut(s) 269, 389
BccI CCATC 3 cut(s) 23, 341, 342
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 100, 158
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 353
BpuEI CTTGAG 2 cut(s) 279, 356
BsaBI GATNNNNATC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 229
BseGI GGATG 2 cut(s) 334, 458
BseJI GATNNNNATC 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 100, 158
BsmBI CGTCTC 1 cut(s) 158
Bsp143I GATC 4 cut(s) 19, 306, 408, 441
BspACI CCGC 2 cut(s) 245, 394
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 394
BssMI GATC 4 cut(s) 19, 306, 408, 441
BssSI CACGAG 2 cut(s) 269, 389
Bst2BI CACGAG 2 cut(s) 269, 389
Bst4CI ACNGT 3 cut(s) 284, 342, 427
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 64, 89
BstF5I GGATG 2 cut(s) 334, 458
BstFNI CGCG 1 cut(s) 314
BstKTI GATC 4 cut(s) 22, 309, 411, 444
BstMAI GTCTC 2 cut(s) 100, 158
BstMBI GATC 4 cut(s) 19, 306, 408, 441
BstSFI CTRYAG 1 cut(s) 378
BstUI CGCG 1 cut(s) 314
BtsCI GGATG 2 cut(s) 334, 458
Cac8I GCNNGC 2 cut(s) 64, 89
CseI GACGC 1 cut(s) 140
CviAII CATG 1 cut(s) 118
CviJI RGCY 2 cut(s) 244, 276
CviKI_1 RGCY 2 cut(s) 244, 276
DpnI GATC 4 cut(s) 21, 308, 410, 443
DpnII GATC 4 cut(s) 19, 306, 408, 441
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 69, 119, 201, 422
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 387
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 2 cut(s) 321, 445
Fsp4HI GCNGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 245
HgaI GACGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 121
HincII GTYRAC 1 cut(s) 434
HindII GTYRAC 1 cut(s) 434
HinfI GANTC 3 cut(s) 125, 267, 398
HphI GGTGA 2 cut(s) 44, 165
Hpy166II GTNNAC 3 cut(s) 378, 386, 434
Hpy188I TCNGA 2 cut(s) 124, 346
Hpy188III TCNNGA 2 cut(s) 26, 271
Hpy8I GTNNAC 3 cut(s) 378, 386, 434
HpyCH4III ACNGT 3 cut(s) 284, 342, 427
HpyCH4V TGCA 3 cut(s) 87, 111, 329
Hsp92II CATG 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 4 cut(s) 19, 306, 408, 441
LpnPI CCDG 4 cut(s) 39, 366, 422, 430
MaeIII GTNAC 1 cut(s) 171
MalI GATC 4 cut(s) 21, 308, 410, 443
MbiI CCGCTC 1 cut(s) 394
MboI GATC 4 cut(s) 19, 306, 408, 441
MboII GAAGA 5 cut(s) 14, 120, 225, 349, 403
MluCI AATT 3 cut(s) 35, 177, 212
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 5 cut(s) 365, 371, 377, 380, 442
MseI TTAA 1 cut(s) 466
MvnI CGCG 1 cut(s) 314
NdeII GATC 4 cut(s) 19, 306, 408, 441
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 2 cut(s) 125, 398
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 4 cut(s) 19, 306, 408, 441
SchI GAGTC 1 cut(s) 261
SetI ASST 3 cut(s) 278, 369, 385
SfcI CTRYAG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 294, 371
SmoI CTYRAG 2 cut(s) 294, 371
Sse9I AATT 3 cut(s) 35, 177, 212
SsiI CCGC 2 cut(s) 245, 394
TaaI ACNGT 3 cut(s) 284, 342, 427
TaqI TCGA 2 cut(s) 55, 261
TasI AATT 3 cut(s) 35, 177, 212
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 2 cut(s) 125, 398
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TseFI GTSAC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 3 cut(s) 17, 205, 390
Van91I CCANNNNNTGG 1 cut(s) 105
XapI RAATTY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.