Rorug06G0096600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000216
Physical Location & Seq
Forward (+)
12894860 .. 12895654
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0096600.1

Sequence Viewer

Length: 795 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAGCAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCAGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGATTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTTAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTCCGATGAAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAAGTTTCCGGAGCCGCTGACTCGGCTTAGTAGCTTCGCGAGTGTAGGAACACTTAGAATTGCCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

264

Amino Acids

29.19

Weight (kDa)

6.1

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 3e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 394
Acc36I ACCTGC 3 cut(s) 78, 160, 394
AccII CGCG 1 cut(s) 764
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 4 cut(s) 82, 402, 660, 740
AclWI GGATC 4 cut(s) 188, 363, 382, 463
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 3 cut(s) 220, 492, 587
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 1 cut(s) 576
AleI CACNNNNGTG 1 cut(s) 669
AluBI AGCT 6 cut(s) 130, 193, 500, 694, 719, 759
AluI AGCT 6 cut(s) 130, 193, 500, 694, 719, 759
Alw21I GWGCWC 1 cut(s) 696
AlwI GGATC 4 cut(s) 188, 363, 382, 463
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 733
ApeKI GCWGC 2 cut(s) 42, 50
Asp700I GAANNNNTTC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 4 cut(s) 335, 458, 566, 626
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 696
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 54, 62
BccI CCATC 2 cut(s) 26, 427
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 578
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 480, 513
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 394
BisI GCNGC 3 cut(s) 43, 51, 740
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 3 cut(s) 44, 52, 741
Bme1390I CCNGG 2 cut(s) 55, 578
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 6, 155, 738
BmrFI CCNGG 2 cut(s) 55, 578
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 2 cut(s) 173, 522
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 107, 710
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 733
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 1 cut(s) 709
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 2 cut(s) 54, 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 734
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 696
Bsp13I TCCGGA 1 cut(s) 733
Bsp143I GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
Bsp1720I GCTNAGC 1 cut(s) 695
Bsp68I TCGCGA 1 cut(s) 764
BspACI CCGC 4 cut(s) 82, 402, 660, 740
BspCNI CTCAG 1 cut(s) 708
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 3 cut(s) 6, 155, 738
BspMI ACCTGC 3 cut(s) 78, 160, 394
BspPI GGATC 4 cut(s) 188, 363, 382, 463
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 3 cut(s) 163, 600, 668
Bst6I CTCTTC 1 cut(s) 467
BstDEI CTNAG 4 cut(s) 496, 695, 752, 779
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 764
BstKTI GATC 8 cut(s) 109, 183, 213, 311, 358, 377, 458, 574
BstMBI GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
BstMWI GCNNNNNNNGC 4 cut(s) 79, 401, 705, 748
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 576
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 2 cut(s) 54, 62
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 3 cut(s) 180, 374, 455
BstYI RGATCY 3 cut(s) 180, 374, 455
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 596
BtuMI TCGCGA 1 cut(s) 764
BveI ACCTGC 3 cut(s) 78, 160, 394
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 9 cut(s) 70, 293, 301, 350, 466, 532, 553, 611, 634
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 4 cut(s) 496, 695, 752, 779
DpnI GATC 8 cut(s) 108, 182, 212, 310, 357, 376, 457, 573
DpnII GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 2 cut(s) 256, 696
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 694
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 576
EcoT38I GRGCYC 2 cut(s) 256, 696
FaeI CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
FaqI GGGAC 1 cut(s) 139
FatI CATG 9 cut(s) 69, 292, 300, 349, 465, 531, 552, 610, 633
Fnu4HI GCNGC 3 cut(s) 43, 51, 740
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 2 cut(s) 256, 696
Fsp4HI GCNGC 3 cut(s) 43, 51, 740
FspBI CTAG 2 cut(s) 480, 513
GluI GCNGC 3 cut(s) 43, 51, 740
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 173, 522
HapII CCGG 2 cut(s) 54, 734
Hin1II CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 94, 117, 745
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 2 cut(s) 54, 734
HphI GGTGA 4 cut(s) 335, 458, 566, 626
Hpy166II GTNNAC 3 cut(s) 244, 279, 424
Hpy188I TCNGA 3 cut(s) 111, 286, 649
Hpy188III TCNNGA 5 cut(s) 220, 241, 257, 734, 763
Hpy8I GTNNAC 3 cut(s) 244, 279, 424
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 3 cut(s) 163, 600, 668
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 401, 705, 748
HpyF3I CTNAG 4 cut(s) 496, 695, 752, 779
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
Kpn2I TCCGGA 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
LmnI GCTCC 3 cut(s) 84, 127, 736
Lsp1109I GCAGC 2 cut(s) 54, 62
MaeI CTAG 2 cut(s) 480, 513
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 334, 662
MalI GATC 8 cut(s) 108, 182, 212, 310, 357, 376, 457, 573
MboI GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
MboII GAAGA 7 cut(s) 280, 283, 369, 390, 484, 581, 649
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 3 cut(s) 180, 374, 455
MhlI GDGCHC 3 cut(s) 256, 300, 696
MluCI AATT 2 cut(s) 340, 783
MlyI GAGTC 1 cut(s) 739
MnlI CCTC 9 cut(s) 22, 29, 131, 171, 346, 497, 557, 610, 703
MroI TCCGGA 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 2 cut(s) 366, 423
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 3 cut(s) 193, 404, 742
MspI CCGG 2 cut(s) 54, 734
MspR9I CCNGG 2 cut(s) 55, 578
MunI CAATTG 1 cut(s) 340
MvaI CCWGG 1 cut(s) 578
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 4 cut(s) 79, 401, 705, 748
NciI CCSGG 1 cut(s) 55
NdeII GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
NlaIII CATG 9 cut(s) 73, 296, 304, 353, 469, 535, 556, 614, 637
NlaIV GGNNCC 3 cut(s) 6, 155, 738
NmeAIII GCCGAG 1 cut(s) 727
NmuCI GTSAC 1 cut(s) 662
NruI TCGCGA 1 cut(s) 764
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 669
PaqCI CACCTGC 2 cut(s) 78, 394
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 3 cut(s) 44, 52, 741
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 3 cut(s) 6, 155, 738
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 502, 534
PsuI RGATCY 3 cut(s) 180, 374, 455
PvuII CAGCTG 1 cut(s) 193
RruI TCGCGA 1 cut(s) 764
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 2 cut(s) 366, 423
SatI GCNGC 3 cut(s) 43, 51, 740
Sau3AI GATC 8 cut(s) 106, 180, 210, 308, 355, 374, 455, 571
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 2 cut(s) 55, 578
SduI GDGCHC 3 cut(s) 256, 300, 696
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 122, 689
SmoI CTYRAG 2 cut(s) 122, 689
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 2 cut(s) 340, 783
SsiI CCGC 4 cut(s) 82, 402, 660, 740
SspMI CTAG 2 cut(s) 480, 513
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 2 cut(s) 53, 576
TaaI ACNGT 3 cut(s) 163, 600, 668
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 340, 783
TauI GCSGC 1 cut(s) 742
TfiI GAWTC 2 cut(s) 94, 117
Tru1I TTAA 2 cut(s) 366, 423
Tru9I TTAA 2 cut(s) 366, 423
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 2 cut(s) 42, 50
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 6 cut(s) 281, 476, 541, 548, 650, 666
TspRI CASTG 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 2 cut(s) 480, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.