Prupe.6G076400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000216
Physical Location & Seq
Forward (+)
5250715 .. 5251426
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G076400.1

Sequence Viewer

Length: 258 bp
ATGTGCCATTACGATATGGAGGATCCCTACATGTGTGTTTTGGAGTTGAAAGAAGTCGAAGAAGATGATCAGAAGGCGGATGGAATTGCAGGCAGATTGATGAAATGGTGTTTGATAAAAAAGCTTGTCCTGGACGAAATGGTTGCGGAAAATCCAGACATTGCTAAATGGCCGGCAGCGGCAGGATGGTGGTGGTTAGCTAGTGTGCGGGCTTTTGACCCAAAACGGCGAGGATATTTTGTATTTACGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

86

Amino Acids

9.95

Weight (kDa)

4.86

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 77, 146, 179, 208
AclWI GGATC 2 cut(s) 17, 30
AcoI YGGCCR 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 124, 200
AluI AGCT 2 cut(s) 124, 200
AlwI GGATC 2 cut(s) 17, 30
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 188
BccI CCATC 2 cut(s) 74, 180
BceAI ACGGC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 67
BfaI CTAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 177, 180
BlsI GCNGC 2 cut(s) 178, 181
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 85, 191
BseMI GCAATG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 22, 67
BspACI CCGC 4 cut(s) 77, 146, 179, 208
BspANI GGCC 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 17, 30
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssMI GATC 2 cut(s) 22, 67
Bst2UI CCWGG 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 91, 174, 210
BstF5I GGATG 2 cut(s) 85, 191
BstKTI GATC 2 cut(s) 25, 70
BstMBI GATC 2 cut(s) 22, 67
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 85, 191
Cac8I GCNNGC 3 cut(s) 91, 174, 210
Cfr10I RCCGGY 1 cut(s) 172
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 124, 172, 200, 212
CviKI_1 RGCY 4 cut(s) 124, 172, 200, 212
DpnI GATC 2 cut(s) 24, 69
DpnII GATC 2 cut(s) 22, 67
EaeI YGGCCR 1 cut(s) 170
EciI GGCGGA 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 17, 32
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 177, 180
FokI GGATG 2 cut(s) 92, 198
Fsp4HI GCNGC 2 cut(s) 177, 180
FspBI CTAG 1 cut(s) 201
GluI GCNGC 2 cut(s) 177, 180
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 122
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 1 cut(s) 34
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 2 cut(s) 22, 67
LpnPI CCDG 6 cut(s) 75, 116, 143, 168, 168, 186
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 248
MalI GATC 2 cut(s) 24, 69
MboI GATC 2 cut(s) 22, 67
MboII GAAGA 2 cut(s) 71, 74
MflI RGATCY 1 cut(s) 22
MluCI AATT 1 cut(s) 84
MnlI CCTC 2 cut(s) 13, 224
MroNI GCCGGC 1 cut(s) 172
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 174
NdeII GATC 2 cut(s) 22, 67
NgoMIV GCCGGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 178, 181
PscI ACATGT 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 22
SatI GCNGC 2 cut(s) 177, 180
Sau3AI GATC 2 cut(s) 22, 67
ScrFI CCNGG 1 cut(s) 131
SetI ASST 3 cut(s) 126, 202, 251
Sse9I AATT 1 cut(s) 84
SsiI CCGC 4 cut(s) 77, 146, 179, 208
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 129
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 84
TauI GCSGC 1 cut(s) 182
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 116
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.