RLG00000012062

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000216
Physical Location & Seq
Forward (+)
14911432 .. 14912214
783 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012062

Sequence Viewer

Length: 783 bp
ATGGGTTGCTCTTCCTCGGGTTCCTCGATGCCGAAAAGATGTGCATGTGGGGTTTACCTGTCCGACATTAGGTGCTGCAAGGATGTAAGAATTCTTGGATTTAAAGTAGAGCCGGAGACTCATCCATTGGAGGTGGAGATCTTCTCTGCTGAGACTGGTAAATGGCTAAAATCAGACCTTGTAGTACAAGGCATTAACCCATCTCTTTATTACTATGAACGTATCAGGAGGAGAATTTCACCAGTTGCTCACAATGGAACATTGTACTGGATGACTACTGGTGGCTATCTTATTGGGTTGGAGCTTTTGAATAAGTTGAACATTAATAGCACTAAATGTCATGGTCGTTTTATTTCCAACCCTCATCCTGTTGATGAAAACTTATTGAATGAAGAGATGGTATGTGTTTGCCAGGGGTGTGTGAGGCTATGCCGGTTATGTAGGGGACTTGGCAGATGCAGTCTCTATGTTTGGGACTTGAAAGAAGATGATGATCATCCCCCTCATGGAGGTGGGAGCGAATGGTGTTTGAAAAAGTTGGTTGACCTGCGTCCAATTATTTCGAGTATCTGGGGGAGCTATGAGCTTCTGGCTTTCGACCCAAATGATGAAGATATATTGTATCTATGGCGTATTAACTGGGAGAAACTATTCAAGAAAGACATTGTCATGTGCAACATACGTAAATTGACGGTAATTGAAATCTCTCAAAAGTTTTCTTCTTCTTGGCTGTTAAGAACCTTTGCTCCCATATATGGTGGCGTTGGCCAACGTATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

261

Amino Acids

29.7

Weight (kDa)

8.13

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 34 - 232 4.3e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 555
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 2 cut(s) 90, 234
AfaI GTAC 2 cut(s) 186, 266
AfiI CCNNNNNNNGG 4 cut(s) 69, 506, 509, 755
AgsI TTSAA 7 cut(s) 310, 319, 388, 481, 532, 655, 701
AjnI CCWGG 1 cut(s) 411
AloI GAACNNNNNNTCC 2 cut(s) 730, 762
AluBI AGCT 3 cut(s) 304, 579, 586
AluI AGCT 3 cut(s) 304, 579, 586
Alw26I GTCTC 3 cut(s) 110, 146, 467
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 766
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 2 cut(s) 90, 234
AseI ATTAAT 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 650
AsuHPI GGTGA 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 16
BalI TGGCCA 1 cut(s) 768
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 208, 391
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 1 cut(s) 493
BcoDI GTCTC 3 cut(s) 110, 146, 467
BfuAI ACCTGC 1 cut(s) 555
BglII AGATCT 1 cut(s) 138
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 2 cut(s) 18, 446
BmuI ACTGGG 1 cut(s) 649
BoxI GACNNNNGTC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BsaAI YACGTR 1 cut(s) 683
BsaBI GATNNNNATC 2 cut(s) 492, 495
BsaJI CCNNGG 2 cut(s) 15, 412
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 506, 509, 755
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 5 cut(s) 160, 242, 272, 283, 644
Bse8I GATNNNNATC 2 cut(s) 492, 495
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 15, 412
BseGI GGATG 5 cut(s) 88, 121, 276, 364, 496
BseJI GATNNNNATC 2 cut(s) 492, 495
BseLI CCNNNNNNNGG 4 cut(s) 69, 506, 509, 755
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 5 cut(s) 160, 242, 272, 283, 644
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 768
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 2 cut(s) 113, 433
BslFI GGGAC 2 cut(s) 459, 488
BslI CCNNNNNNNGG 4 cut(s) 69, 506, 509, 755
BsmAI GTCTC 3 cut(s) 110, 146, 467
BsmFI GGGAC 2 cut(s) 459, 488
BsnI GGCC 1 cut(s) 768
BsoBI CYCGRG 1 cut(s) 16
Bsp143I GATC 2 cut(s) 138, 493
BspANI GGCC 1 cut(s) 768
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 555
BspQI GCTCTTC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 5 cut(s) 160, 242, 272, 283, 644
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 15, 412
BssMI GATC 2 cut(s) 138, 493
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 2 cut(s) 16, 387
BstBAI YACGTR 1 cut(s) 683
BstDEI CTNAG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 5 cut(s) 88, 121, 276, 364, 496
BstKTI GATC 2 cut(s) 141, 496
BstMAI GTCTC 3 cut(s) 110, 146, 467
BstMBI GATC 2 cut(s) 138, 493
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 48
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 411
BstSNI TACGTA 1 cut(s) 683
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 1 cut(s) 768
BtsCI GGATG 5 cut(s) 88, 121, 276, 364, 496
BveI ACCTGC 1 cut(s) 555
Cfr10I RCCGGY 1 cut(s) 432
CseI GACGC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 185, 265
CviAII CATG 4 cut(s) 45, 341, 506, 670
CviQI GTAC 2 cut(s) 185, 265
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 140, 495
DpnII GATC 2 cut(s) 138, 493
DraI TTTAAA 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 2 cut(s) 16, 387
EarI CTCTTC 2 cut(s) 16, 387
Eco105I TACGTA 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 48, 344, 509, 673
FaqI GGGAC 2 cut(s) 459, 488
FatI CATG 4 cut(s) 44, 340, 505, 669
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 5 cut(s) 95, 108, 283, 351, 483
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 768
HapII CCGG 2 cut(s) 113, 433
HgaI GACGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 48, 344, 509, 673
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 1 cut(s) 118
HpaII CCGG 2 cut(s) 113, 433
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 55, 544
Hpy188I TCNGA 2 cut(s) 64, 175
Hpy188III TCNNGA 2 cut(s) 226, 655
Hpy8I GTNNAC 2 cut(s) 55, 544
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 3 cut(s) 220, 682, 772
HpyCH4V TGCA 4 cut(s) 44, 78, 459, 675
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 3 cut(s) 220, 682, 772
Hsp92II CATG 4 cut(s) 48, 344, 509, 673
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 2 cut(s) 138, 493
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 4 cut(s) 301, 516, 576, 751
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 18, 446
MaeII ACGT 3 cut(s) 220, 682, 772
MalI GATC 2 cut(s) 140, 495
MboI GATC 2 cut(s) 138, 493
MboII GAAGA 7 cut(s) 3, 133, 404, 497, 623, 711, 714
MflI RGATCY 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 768
MluCI AATT 5 cut(s) 90, 234, 555, 686, 696
MluNI TGGCCA 1 cut(s) 768
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 3 cut(s) 87, 279, 381
MnlI CCTC 8 cut(s) 25, 34, 124, 222, 372, 417, 503, 513
Mox20I TGGCCA 1 cut(s) 768
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 1 cut(s) 768
MseI TTAA 6 cut(s) 102, 195, 324, 636, 734, 781
MslI CAYNNNNRTG 2 cut(s) 510, 668
Msp20I TGGCCA 1 cut(s) 768
MspI CCGG 2 cut(s) 113, 433
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
NdeII GATC 2 cut(s) 138, 493
NlaIII CATG 4 cut(s) 48, 344, 509, 673
NlaIV GGNNCC 1 cut(s) 22
NspI RCATGY 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 650
PflFI GACNNNGTC 1 cut(s) 665
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 683
PshAI GACNNNNGTC 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 665
RsaI GTAC 2 cut(s) 186, 266
RsaNI GTAC 2 cut(s) 185, 265
RseI CAYNNNNRTG 2 cut(s) 510, 668
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 6 cut(s) 102, 195, 324, 636, 734, 781
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 138, 493
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 413
SfaNI GCATC 2 cut(s) 18, 446
SmiMI CAYNNNNRTG 2 cut(s) 510, 668
SnaBI TACGTA 1 cut(s) 683
Sse9I AATT 5 cut(s) 90, 234, 555, 686, 696
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 3 cut(s) 223, 685, 775
TaqI TCGA 3 cut(s) 26, 563, 597
TasI AATT 5 cut(s) 90, 234, 555, 686, 696
TatI WGTACW 2 cut(s) 184, 264
Tru1I TTAA 6 cut(s) 102, 195, 324, 636, 734, 781
Tru9I TTAA 6 cut(s) 102, 195, 324, 636, 734, 781
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 4 cut(s) 231, 390, 405, 624
Tth111I GACNNNGTC 1 cut(s) 665
VspI ATTAAT 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 2 cut(s) 90, 234
XceI RCATGY 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.