Rorug02G0506200

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000216
Physical Location & Seq
Forward (+)
63755064 .. 63755965
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0506200.1

Sequence Viewer

Length: 810 bp
ATGCAACGGGTTGCTCTTCCTCCCACCCTTCCCCACCACGACGACCTTGACGTTGCAGAAGTGGGATTCATCTCTGAACCCTATTATAAAGAACAAAATGATACTACTAGTAGAACTATGATCCTCGATAATGAGTATAGGTGTCGTGTTGTGCTAATTTATGAATTTCCAGAGAATTCGTTCCGATTCTGCATGGACATCTTTTTTTCTGAGACCGGTGAATGGAGAGAATTTGTTGTATTATGCCCGGAAAGAGCTATTGAATATTGCAGTATCGACATTACTGAGAAAAACTCTTACAATAATAGTGGAGGCCTTGTGTACAATGGAAAGTTGTATTGGTTAGGCGAAGGTGGCATCATGGAGTTGGATCCCTTGGCATTTGACAGTAATACTAGTTATAGTGATCTCATCAATCGGGGTGACTTTGAGATTTGCGAGTTGGAATTAGGAGATGATGATCAGTCGTCGGATGGAGGCAAATGGTGTTTTACACTTGCTACACGGCGGTGCATACCTCTCAACCACGATACTGGGAGGCCTTGGCTGCTATCTTTGGACTCAATCAATGAGGATTGCTTCTATGTGATCTCCAAATCTGGATACTTCGGCAAGGGCAACATGAGGACCGGAGTGATAAAGTACAATACAGTGAAGCGATGCCCTGGTCTTGGTTTTCGGGATTCATTTGGAGCCTTCCCATTTGTGCTCCCATGGTGGCCGACACCAGTTCCTAGAATTAAAAATGACCACAAACAACCAGTTCCTAGTGGTATTGACATTCTGTGCAGTTTGTTACTGGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

269

Amino Acids

30.76

Weight (kDa)

4.66

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AciI CCGC 1 cut(s) 508
AclWI GGATC 4 cut(s) 115, 365, 378, 797
AcoI YGGCCR 1 cut(s) 719
AcsI RAATTY 3 cut(s) 164, 175, 230
AfaI GTAC 2 cut(s) 323, 644
AfiI CCNNNNNNNGG 2 cut(s) 222, 671
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 1 cut(s) 263
AhlI ACTAGT 2 cut(s) 107, 395
AjnI CCWGG 1 cut(s) 664
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 4 cut(s) 115, 365, 378, 797
AoxI GGCC 3 cut(s) 313, 539, 719
ApeKI GCWGC 1 cut(s) 547
ApoI RAATTY 3 cut(s) 164, 175, 230
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 627
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 230, 434
AvaII GGWCC 1 cut(s) 627
BamHI GGATCC 2 cut(s) 370, 802
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 534
BccI CCATC 1 cut(s) 467
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 666
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 206
BcuI ACTAGT 2 cut(s) 107, 395
BfaI CTAG 4 cut(s) 108, 396, 735, 768
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 1 cut(s) 548
BlsI GCNGC 1 cut(s) 549
Bme1390I CCNGG 2 cut(s) 248, 666
Bme18I GGWCC 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 627
BmiI GGNNCC 3 cut(s) 372, 694, 804
BmrFI CCNGG 2 cut(s) 248, 666
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 2 cut(s) 366, 650
BmuI ACTGGG 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpuMI CCSGG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 375, 542, 664, 713
BsaWI WCCGGW 2 cut(s) 215, 629
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 671
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 4 cut(s) 538, 728, 761, 804
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 4 cut(s) 375, 542, 664, 713
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 222, 671
BseMII CTCAG 2 cut(s) 201, 276
BseNI ACTGG 4 cut(s) 538, 728, 761, 804
BseXI GCAGC 1 cut(s) 534
BsgI GTGCAG 1 cut(s) 808
BshFI GGCC 3 cut(s) 315, 541, 721
BshTI ACCGGT 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 3 cut(s) 216, 248, 630
BslI CCNNNNNNNGG 2 cut(s) 222, 671
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 3 cut(s) 315, 541, 721
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 711
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 6 cut(s) 120, 370, 406, 460, 588, 802
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 1 cut(s) 508
BspANI GGCC 3 cut(s) 315, 541, 721
BspCNI CTCAG 2 cut(s) 202, 277
BspLI GGNNCC 3 cut(s) 372, 694, 804
BspPI GGATC 4 cut(s) 115, 365, 378, 797
BspQI GCTCTTC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 215
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 4 cut(s) 538, 728, 761, 804
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 375, 542, 664, 713
BssMI GATC 6 cut(s) 120, 370, 406, 460, 588, 802
BssT1I CCWWGG 3 cut(s) 375, 542, 713
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 389, 652
Bst6I CTCTTC 1 cut(s) 21
BstAUI TGTACA 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 210, 285
BstDSI CCRYGG 1 cut(s) 713
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 6 cut(s) 123, 373, 409, 463, 591, 805
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 6 cut(s) 120, 370, 406, 460, 588, 802
BstMWI GCNNNNNNNGC 2 cut(s) 354, 547
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 2 cut(s) 246, 664
BstV1I GCAGC 1 cut(s) 534
BstX2I RGATCY 2 cut(s) 370, 802
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 2 cut(s) 370, 802
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 3 cut(s) 315, 541, 721
BtgI CCRYGG 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 673
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 657
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 627
Csp6I GTAC 2 cut(s) 322, 643
CspAI ACCGGT 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 4 cut(s) 193, 361, 622, 714
CviJI RGCY 6 cut(s) 257, 315, 541, 547, 695, 721
CviKI_1 RGCY 6 cut(s) 257, 315, 541, 547, 695, 721
CviQI GTAC 2 cut(s) 322, 643
DdeI CTNAG 2 cut(s) 210, 285
DpnI GATC 6 cut(s) 122, 372, 408, 462, 590, 804
DpnII GATC 6 cut(s) 120, 370, 406, 460, 588, 802
EaeI YGGCCR 1 cut(s) 719
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 3 cut(s) 375, 542, 713
Eco147I AGGCCT 2 cut(s) 315, 541
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 627
EcoRI GAATTC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 3 cut(s) 375, 542, 713
ErhI CCWWGG 3 cut(s) 375, 542, 713
FaeI CATG 4 cut(s) 196, 364, 625, 717
FatI CATG 4 cut(s) 192, 360, 621, 713
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 548
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 548
FspBI CTAG 4 cut(s) 108, 396, 735, 768
GluI GCNGC 1 cut(s) 548
HaeIII GGCC 3 cut(s) 315, 541, 721
HapII CCGG 3 cut(s) 216, 248, 630
Hin1II CATG 4 cut(s) 196, 364, 625, 717
HinfI GANTC 4 cut(s) 66, 186, 560, 683
HpaII CCGG 3 cut(s) 216, 248, 630
HphI GGTGA 2 cut(s) 230, 434
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 76, 185, 211, 472
Hpy188III TCNNGA 3 cut(s) 170, 600, 680
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 2 cut(s) 44, 472
HpyAV CCTTC 3 cut(s) 38, 344, 706
HpyCH4III ACNGT 2 cut(s) 389, 652
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 4, 56, 192, 270, 513, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 547
HpyF3I CTNAG 2 cut(s) 210, 285
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 4 cut(s) 196, 364, 625, 717
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 120, 370, 406, 460, 588, 802
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 692, 714
Lsp1109I GCAGC 1 cut(s) 534
LweI GCATC 2 cut(s) 366, 650
MaeI CTAG 4 cut(s) 108, 396, 735, 768
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 422, 795
MalI GATC 6 cut(s) 122, 372, 408, 462, 590, 804
MboI GATC 6 cut(s) 120, 370, 406, 460, 588, 802
MboII GAAGA 1 cut(s) 8
MflI RGATCY 2 cut(s) 370, 802
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 6 cut(s) 156, 164, 175, 230, 446, 738
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 3 cut(s) 348, 423, 450
MnlI CCTC 8 cut(s) 30, 134, 305, 470, 528, 531, 565, 618
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 1 cut(s) 508
MspI CCGG 3 cut(s) 216, 248, 630
MspR9I CCNGG 2 cut(s) 248, 666
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 2 cut(s) 354, 547
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 713
NdeII GATC 6 cut(s) 120, 370, 406, 460, 588, 802
NlaIII CATG 4 cut(s) 196, 364, 625, 717
NlaIV GGNNCC 3 cut(s) 372, 694, 804
NmuCI GTSAC 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 508
PceI AGGCCT 2 cut(s) 315, 541
PciSI GCTCTTC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 66, 186, 683
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 1 cut(s) 549
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PsiI TTATAA 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 372, 694, 804
PspPI GGNCC 1 cut(s) 627
PsuI RGATCY 2 cut(s) 370, 802
RsaI GTAC 2 cut(s) 323, 644
RsaNI GTAC 2 cut(s) 322, 643
RseI CAYNNNNRTG 1 cut(s) 508
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 1 cut(s) 548
Sau3AI GATC 6 cut(s) 120, 370, 406, 460, 588, 802
Sau96I GGNCC 1 cut(s) 627
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 248, 666
SduI GDGCHC 1 cut(s) 711
SetI ASST 6 cut(s) 48, 54, 143, 259, 355, 520
SfaNI GCATC 2 cut(s) 366, 650
SinI GGWCC 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 508
SpeI ACTAGT 2 cut(s) 107, 395
Sse9I AATT 6 cut(s) 156, 164, 175, 230, 446, 738
SseBI AGGCCT 2 cut(s) 315, 541
SsiI CCGC 1 cut(s) 508
SspI AATATT 1 cut(s) 266
SspMI CTAG 4 cut(s) 108, 396, 735, 768
StuI AGGCCT 2 cut(s) 315, 541
StyD4I CCNGG 2 cut(s) 246, 664
StyI CCWWGG 3 cut(s) 375, 542, 713
TaaI ACNGT 2 cut(s) 389, 652
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 126, 276
TasI AATT 6 cut(s) 156, 164, 175, 230, 446, 738
TatI WGTACW 2 cut(s) 321, 642
TfiI GAWTC 3 cut(s) 66, 186, 683
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 547
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 58, 177, 675
TspRI CASTG 1 cut(s) 657
VpaK11BI GGWCC 1 cut(s) 627
XapI RAATTY 3 cut(s) 164, 175, 230
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 4 cut(s) 108, 396, 735, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.