Rmu_ssc0000076.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000076.1
OG0000216
Physical Location & Seq
Forward (+)
115510 .. 116040
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000076.1_g000025.1.cds

Sequence Viewer

Length: 531 bp
atgtcatcctccaccaagccgctagctctgttgtttgaaagactcatgagttctcaccatttggaacaagagccgctagtggtagctacgtataatgacttagttatgtgctgttcaactggggtctattatcaacgtgattactacatctgcaatccgtgcacaattcagtgtgttcctgttcctccccctcctcgagtttaccggtatacaccagtgggattcatatgtgatcttccctactatagctgtacgaaagatgatcagggaggaagtttcattcaggttaatgcggagtataggtgcaggatagtgagattaattcttcgtaagagatctgtctgtaaactcaaagtgcaaatcttctcctctgatactggtgaatggataacgtcaactatatcaattccatcaggttttatttctgacactgtccctctagagaggagcttctcttacaatggcatgctgtattttgtgggtgatgaacctggtgatcaaaattttcttatggggttggatcattcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

176

Amino Acids

20.01

Weight (kDa)

5.88

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 209
AciI CCGC 3 cut(s) 20, 74, 293
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 1 cut(s) 502
AfaI GTAC 1 cut(s) 253
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 2 cut(s) 38, 117
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 26, 86, 249, 450
AluI AGCT 4 cut(s) 26, 86, 249, 450
Alw21I GWGCWC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 160
AlwI GGATC 1 cut(s) 528
Ama87I CYCGRG 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 502
AseI ATTAAT 1 cut(s) 320
AsiGI ACCGGT 1 cut(s) 204
AsuHPI GGTGA 4 cut(s) 47, 392, 494, 506
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 492
BclI TGATCA 2 cut(s) 262, 496
BfaI CTAG 3 cut(s) 23, 77, 440
BfmI CTRYAG 1 cut(s) 244
BglII AGATCT 1 cut(s) 335
BisI GCNGC 2 cut(s) 20, 74
BlsI GCNGC 2 cut(s) 21, 75
Bme1390I CCNGG 1 cut(s) 492
BmeT110I CYCGRG 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 492
BmrI ACTGGG 1 cut(s) 129
BmtI GCTAGC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 124, 215, 382
BseBI CCWGG 1 cut(s) 492
BseGI GGATG 1 cut(s) 5
BseNI ACTGG 3 cut(s) 124, 215, 382
BseRI GAGGAG 3 cut(s) 183, 358, 460
BseSI GKGCMC 1 cut(s) 164
BsgI GTGCAG 1 cut(s) 325
BshTI ACCGGT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 5 cut(s) 232, 262, 335, 496, 520
BspACI CCGC 3 cut(s) 20, 74, 293
BspHI TCATGA 2 cut(s) 45, 527
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 3 cut(s) 124, 215, 382
BssAI RCCGGY 1 cut(s) 204
BssMI GATC 5 cut(s) 232, 262, 335, 496, 520
BssNAI GTATAC 1 cut(s) 210
Bst1107I GTATAC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 24, 467
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 5 cut(s) 235, 265, 338, 499, 523
BstMBI GATC 5 cut(s) 232, 262, 335, 496, 520
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 490
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 164
BstSNI TACGTA 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BstZ17I GTATAC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 3 cut(s) 176, 222, 429
Cac8I GCNNGC 2 cut(s) 24, 467
CciI TCATGA 2 cut(s) 45, 527
Cfr10I RCCGGY 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 490
Csp6I GTAC 1 cut(s) 252
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 3 cut(s) 46, 466, 528
CviJI RGCY 6 cut(s) 19, 26, 73, 86, 249, 450
CviKI_1 RGCY 6 cut(s) 19, 26, 73, 86, 249, 450
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 100
DpnI GATC 5 cut(s) 234, 264, 337, 498, 522
DpnII GATC 5 cut(s) 232, 262, 335, 496, 520
Eco105I TACGTA 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 490
FaeI CATG 3 cut(s) 49, 469, 531
FaqI GGGAC 1 cut(s) 419
FatI CATG 3 cut(s) 45, 465, 527
FauNDI CATATG 1 cut(s) 227
FbaI TGATCA 2 cut(s) 262, 496
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 20, 74
Fsp4HI GCNGC 2 cut(s) 20, 74
FspBI CTAG 3 cut(s) 23, 77, 440
GluI GCNGC 2 cut(s) 20, 74
HapII CCGG 1 cut(s) 205
Hin1II CATG 3 cut(s) 49, 469, 531
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 2 cut(s) 42, 222
HpaII CCGG 1 cut(s) 205
HphI GGTGA 4 cut(s) 47, 392, 494, 506
Hpy166II GTNNAC 5 cut(s) 162, 202, 210, 347, 396
Hpy188I TCNGA 2 cut(s) 373, 427
Hpy188III TCNNGA 3 cut(s) 46, 440, 528
Hpy8I GTNNAC 5 cut(s) 162, 202, 210, 347, 396
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 3 cut(s) 89, 136, 392
HpyCH4V TGCA 4 cut(s) 153, 162, 306, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 3 cut(s) 89, 136, 392
Hsp92II CATG 3 cut(s) 49, 469, 531
Ksp22I TGATCA 2 cut(s) 262, 496
Kzo9I GATC 5 cut(s) 232, 262, 335, 496, 520
LmnI GCTCC 1 cut(s) 447
MabI ACCWGGT 1 cut(s) 490
MaeI CTAG 3 cut(s) 23, 77, 440
MaeII ACGT 3 cut(s) 89, 136, 392
MalI GATC 5 cut(s) 234, 264, 337, 498, 522
MboI GATC 5 cut(s) 232, 262, 335, 496, 520
MboII GAAGA 3 cut(s) 227, 317, 355
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 4 cut(s) 165, 321, 405, 502
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 8 cut(s) 19, 195, 201, 204, 263, 379, 438, 447
MseI TTAA 2 cut(s) 288, 320
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeI CATATG 1 cut(s) 227
NdeII GATC 5 cut(s) 232, 262, 335, 496, 520
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 3 cut(s) 49, 469, 531
NspI RCATGY 1 cut(s) 469
PaeI GCATGC 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 195
PagI TCATGA 2 cut(s) 45, 527
PfeI GAWTC 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 2 cut(s) 21, 75
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspXI VCTCGAGB 1 cut(s) 195
PsuI RGATCY 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 431
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 288, 320
SatI GCNGC 2 cut(s) 20, 74
Sau3AI GATC 5 cut(s) 232, 262, 335, 496, 520
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 164
SexAI ACCWGGT 1 cut(s) 490
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 195
SlaI CTCGAG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SnaBI TACGTA 1 cut(s) 90
SphI GCATGC 1 cut(s) 469
Sse9I AATT 4 cut(s) 165, 321, 405, 502
SsiI CCGC 3 cut(s) 20, 74, 293
SspMI CTAG 3 cut(s) 23, 77, 440
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 3 cut(s) 92, 139, 395
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 165, 321, 405, 502
TauI GCSGC 2 cut(s) 22, 76
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 288, 320
Tru9I TTAA 2 cut(s) 288, 320
TscAI CASTG 3 cut(s) 176, 222, 436
TspDTI ATGAA 4 cut(s) 214, 268, 501, 516
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 3 cut(s) 176, 222, 436
Tth111I GACNNNGTC 1 cut(s) 431
VneI GTGCAC 1 cut(s) 160
VspI ATTAAT 1 cut(s) 320
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 3 cut(s) 23, 77, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.