Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000216

Physical Location & Seq

Genomic Coordinates Forward (+)

80749774 .. 80753405

Gene Structure 3632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG578100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGAAGGCTTCCAAGGGCAACCATGATGAGTTTGAAGACGATGATGAAGAAAATCAAGCAGGGAAAGCAGAAGGGCAAGGTAGGGAGAAGAACCGGTCGAAACATTCCGAAACAGAGCAGAGAAGGAGGAGCAAGATTAATGAGAGATTTCAAAAGTTGAGAGAGATCATACCCGAAAATGATCAGAAAAGAGATAAGGCTTCTTTCTTGTTAGAGGTTATAGAGTATATACAGTTTTTACATGAGAAGATAAATTTGTATGAGGGTTCATACCAAGGATGGAATCCAGAGCCAACAAAGTTGATCCCCTGGAAAAATCGTCATAGGCCTGGAGAAAATTTTGCAGATCACTCTCAAGTCATGAACAATGGTTCTGGTCTGGAGAATAATGTTGTTGCCTCCCCTGCTATGGTCACCAATGCACAAAACTCAGTGGAATCTGACTTGGACTCTGCTGCTGTATACAAAGCACTAGATCACATTCGTGGACTAGCTACTCCATCCGTTCCTAATATGAACCAGCAAAACATCTTTGACCCTATTGAGAGCATTGGAGCTCCCACGCAACCATTGCAAGAATCTAATACTGATGTTGAGAACATGGCTTCTCAATCCCAATACCAATTGTGGCCGGGTATTACATCAACAACTGTTACAGACAGTAAAATTAATAGGCAGGATGAAAATAAATCAGTTAGCATCTCAAGTGCCTACTCTCAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

242

Amino Acids

27.29

Weight (kDa)

5.16

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	33 - 81	2.9e-16	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38860 AT5G38860
fragaria_vesca	FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica	MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica	Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis	pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis	RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata	RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora	Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa	Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha	Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana	Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	465
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	256, 340
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	38, 155
AjnI	CCWGG	2 cut(s)	311, 331
AleI	CACNNNNGTG	1 cut(s)	486
AluBI	AGCT	2 cut(s)	497, 560
AluI	AGCT	2 cut(s)	497, 560
Alw21I	GWGCWC	1 cut(s)	562
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	2 cut(s)	329, 632
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	256, 340
AseI	ATTAAT	2 cut(s)	141, 672
AsiGI	ACCGGT	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	276, 511
BciT130I	CCWGG	2 cut(s)	313, 333
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	636
BfaI	CTAG	2 cut(s)	476, 494
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	313, 333, 636
BmrFI	CCNGG	3 cut(s)	313, 333, 636
BmsI	GCATC	1 cut(s)	711
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	2 cut(s)	354, 404
BpuEI	CTTGAG	3 cut(s)	342, 691, 705
BpuMI	CCSGG	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	15, 277, 311
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	572
BseBI	CCWGG	2 cut(s)	313, 333
BseDI	CCNNGG	3 cut(s)	15, 277, 311
BseGI	GGATG	3 cut(s)	287, 503, 688
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	445
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	331, 634
BshTI	ACCGGT	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	97, 635
BslI	CCNNNNNNNGG	1 cut(s)	412
BsnI	GGCC	2 cut(s)	331, 634
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	168, 184, 306, 349, 478
BspANI	GGCC	2 cut(s)	331, 634
BspCNI	CTCAG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	363
BspPI	GGATC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	15, 277, 311
BssMI	GATC	5 cut(s)	168, 184, 306, 349, 478
BssNAI	GTATAC	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	15, 277
Bst1107I	GTATAC	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	313, 333
Bst4CI	ACNGT	3 cut(s)	237, 655, 665
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstDEI	CTNAG	1 cut(s)	433
BstEII	GGTNACC	1 cut(s)	415
BstF5I	GGATG	3 cut(s)	287, 503, 688
BstKTI	GATC	5 cut(s)	171, 187, 309, 352, 481
BstMBI	GATC	5 cut(s)	168, 184, 306, 349, 478
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 407, 574
BstNI	CCWGG	2 cut(s)	313, 333
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	3 cut(s)	311, 331, 634
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	45
BstZ17I	GTATAC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	331, 634
BtsCI	GGATG	3 cut(s)	287, 503, 688
BtsIMutI	CAGTG	1 cut(s)	441
CciI	TCATGA	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	96
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	4 cut(s)	26, 245, 364, 604
CviJI	RGCY	8 cut(s)	11, 203, 295, 331, 497, 560, 608, 634
CviKI_1	RGCY	8 cut(s)	11, 203, 295, 331, 497, 560, 608, 634
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	5 cut(s)	170, 186, 308, 351, 480
DpnII	GATC	5 cut(s)	168, 184, 306, 349, 478
EaeI	YGGCCR	1 cut(s)	632
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	15, 277
Eco147I	AGGCCT	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	562
Eco53kI	GAGCTC	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	311, 331
EcoT14I	CCWWGG	2 cut(s)	15, 277
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	15, 277
FaeI	CATG	4 cut(s)	29, 248, 367, 607
FatI	CATG	4 cut(s)	25, 244, 363, 603
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	294, 490, 695
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	2 cut(s)	476, 494
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	2 cut(s)	354, 404
HaeIII	GGCC	2 cut(s)	331, 634
HapII	CCGG	2 cut(s)	97, 635
Hin1II	CATG	4 cut(s)	29, 248, 367, 607
HinfI	GANTC	4 cut(s)	286, 440, 452, 581
HpaII	CCGG	2 cut(s)	97, 635
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	466, 491
Hpy188I	TCNGA	3 cut(s)	112, 189, 445
Hpy188III	TCNNGA	3 cut(s)	290, 364, 383
Hpy8I	GTNNAC	2 cut(s)	466, 491
HpyAV	CCTTC	2 cut(s)	68, 120
HpyCH4III	ACNGT	3 cut(s)	237, 655, 665
HpyCH4V	TGCA	3 cut(s)	347, 425, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 407, 574
HpyF3I	CTNAG	1 cut(s)	433
Hsp92II	CATG	4 cut(s)	29, 248, 367, 607
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	168, 184, 306, 349, 478
LmnI	GCTCC	3 cut(s)	132, 557, 565
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	711
MaeI	CTAG	2 cut(s)	476, 494
MaeIII	GTNAC	2 cut(s)	415, 655
MalI	GATC	5 cut(s)	170, 186, 308, 351, 480
MboI	GATC	5 cut(s)	168, 184, 306, 349, 478
MboII	GAAGA	4 cut(s)	50, 62, 103, 262
MfeI	CAATTG	1 cut(s)	626
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	4 cut(s)	256, 340, 626, 669
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	4 cut(s)	123, 211, 259, 412
MseI	TTAA	2 cut(s)	141, 672
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	2 cut(s)	97, 635
MspR9I	CCNGG	3 cut(s)	313, 333, 636
MunI	CAATTG	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	313, 333
MwoI	GCNNNNNNNGC	3 cut(s)	68, 407, 574
NciI	CCSGG	1 cut(s)	636
NdeII	GATC	5 cut(s)	168, 184, 306, 349, 478
NlaIII	CATG	4 cut(s)	29, 248, 367, 607
NmuCI	GTSAC	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	486
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	286, 440, 581
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PshBI	ATTAAT	2 cut(s)	141, 672
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	311, 331
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	2 cut(s)	311, 331
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	141, 672
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	5 cut(s)	168, 184, 306, 349, 478
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	313, 333, 636
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	4 cut(s)	85, 222, 499, 562
SfaNI	GCATC	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	3 cut(s)	357, 706, 720
SmoI	CTYRAG	3 cut(s)	357, 706, 720
Sse9I	AATT	4 cut(s)	256, 340, 626, 669
SseBI	AGGCCT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	476, 494
SstI	GAGCTC	1 cut(s)	562
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	3 cut(s)	311, 331, 634
StyI	CCWWGG	2 cut(s)	15, 277
TaaI	ACNGT	3 cut(s)	237, 655, 665
TaqI	TCGA	1 cut(s)	101
TasI	AATT	4 cut(s)	256, 340, 626, 669
TfiI	GAWTC	3 cut(s)	286, 440, 581
Tru1I	TTAA	2 cut(s)	141, 672
Tru9I	TTAA	2 cut(s)	141, 672
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	5 cut(s)	63, 261, 380, 533, 699
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	1 cut(s)	441
VspI	ATTAAT	2 cut(s)	141, 672
XapI	RAATTY	2 cut(s)	256, 340
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	2 cut(s)	476, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.