pycom11g08760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000216
Physical Location & Seq
Reverse (-)
6850895 .. 6851668
774 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08760.1

Sequence Viewer

Length: 774 bp
ATGCCTCAAACTGAAATTAATGTTACCGAGTGCACAGTGGAAATGTACTCTTCTGAGACTAATGAATGGAGAGAGACAGTTATATCACACTCCCTAGGTTTTAGCTTTACTACTTACACTCTTTCTCCACGCTTTGCACACAGTGGAATGGTGTACTGGTTGGATTATTGTGGCGTTCTTATTGGGGTAGATCCATTCAACAACTTTAATACCACTGTGATACTACTGCCAATAGCGGTGAAATTGTTGATGATAACGAATTATGTCGTTTCATTGAATTTCAAAAGCCTGAGTTATGAAATTCAATGTTTTCCACGCCTAGGTGTGTGTCAAGGGCGTTTAAGGATGTGCCGTTTTGATTTGGATGGGAAGCCGCACAGCGAAAGCGACACTGACATTTTGTGTGTTTGGGAGTTGAAAGAAGCAGAAGATGATCAGCACGTCGATGGAATCGCAGGCAAATTGAAAAAATGGTGCTGGCTAAAAAAGGTTTCCTTGAACCAAATGCTTGTGGAAAATCCAGGAATTGCTGAATGGCGAGAGAGAATCAGGTGGCGAAGGAGTAGGGCGGCGGCCATTGACCCAAACGATGAGGATATTTTGTACCTAGATTTCGATGGAGATATTGTAGCGTGTAACTTTCGGACAAGAACTTTGTTCAACAGAGCTAGAAACAGGTCAGATGGTGCTGAGTCTGCTGAGTTTCATCCTTGGACGTACGTTTTTCCCCTTTCGCTCCCATGTTGGCCTTCACCAATTCCAAGACTATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

258

Amino Acids

29.73

Weight (kDa)

5.45

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 236, 374, 569, 572
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 2 cut(s) 277, 300
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 4 cut(s) 47, 155, 605, 719
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 8 cut(s) 199, 277, 283, 305, 418, 466, 499, 661
AjiI CACGTC 1 cut(s) 442
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 2 cut(s) 105, 668
AluI AGCT 2 cut(s) 105, 668
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 2 cut(s) 50, 68
Alw44I GTGCAC 1 cut(s) 31
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 573, 746
ApaLI GTGCAC 1 cut(s) 31
ApoI RAATTY 2 cut(s) 277, 300
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
AseI ATTAAT 1 cut(s) 18
AspA2I CCTAGG 2 cut(s) 94, 319
AsuHPI GGTGA 2 cut(s) 250, 744
AvrII CCTAGG 2 cut(s) 94, 319
BaeGI GKGCMC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 4 cut(s) 359, 440, 611, 677
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 522
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 50, 68
BfaI CTAG 4 cut(s) 95, 320, 608, 669
BisI GCNGC 3 cut(s) 374, 570, 573
BlnI CCTAGG 2 cut(s) 94, 319
BlsI GCNGC 3 cut(s) 375, 571, 574
Bme1390I CCNGG 1 cut(s) 522
BmgBI CACGTC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 522
BsaJI CCNNGG 3 cut(s) 94, 319, 710
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 3 cut(s) 94, 319, 710
BseGI GGATG 3 cut(s) 351, 370, 706
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 4 cut(s) 45, 281, 681, 690
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 35
BshFI GGCC 2 cut(s) 575, 748
BsiHKAI GWGCWC 1 cut(s) 35
BsiWI CGTACG 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 50, 68
BsnI GGCC 2 cut(s) 575, 748
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 190, 433
BspACI CCGC 4 cut(s) 236, 374, 569, 572
BspANI GGCC 2 cut(s) 575, 748
BspCNI CTCAG 4 cut(s) 46, 282, 682, 691
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 3 cut(s) 94, 319, 710
BssMI GATC 2 cut(s) 190, 433
BssT1I CCWWGG 3 cut(s) 94, 319, 710
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 4 cut(s) 37, 79, 143, 217
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 457, 479
BstDEI CTNAG 4 cut(s) 54, 290, 690, 699
BstF5I GGATG 3 cut(s) 351, 370, 706
BstKTI GATC 2 cut(s) 193, 436
BstMAI GTCTC 2 cut(s) 50, 68
BstMBI GATC 2 cut(s) 190, 433
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstSLI GKGCMC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 2 cut(s) 575, 748
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 351, 370, 706
BtsIMutI CAGTG 4 cut(s) 42, 148, 213, 390
Cac8I GCNNGC 2 cut(s) 457, 479
Csp6I GTAC 4 cut(s) 46, 154, 604, 718
CviAII CATG 1 cut(s) 741
CviJI RGCY 7 cut(s) 105, 288, 373, 481, 575, 668, 748
CviKI_1 RGCY 7 cut(s) 105, 288, 373, 481, 575, 668, 748
CviQI GTAC 4 cut(s) 46, 154, 604, 718
DdeI CTNAG 4 cut(s) 54, 290, 690, 699
DpnI GATC 2 cut(s) 192, 435
DpnII GATC 2 cut(s) 190, 433
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 3 cut(s) 94, 319, 710
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 3 cut(s) 94, 319, 710
ErhI CCWWGG 3 cut(s) 94, 319, 710
FaeI CATG 1 cut(s) 744
FaiI YATR 5 cut(s) 83, 264, 297, 742, 769
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FatI CATG 1 cut(s) 740
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 374, 570, 573
FokI GGATG 3 cut(s) 358, 377, 693
Fsp4HI GCNGC 3 cut(s) 374, 570, 573
FspBI CTAG 4 cut(s) 95, 320, 608, 669
GluI GCNGC 3 cut(s) 374, 570, 573
HaeIII GGCC 2 cut(s) 575, 748
Hin1II CATG 1 cut(s) 744
HinfI GANTC 3 cut(s) 450, 546, 692
HphI GGTGA 2 cut(s) 250, 744
Hpy166II GTNNAC 2 cut(s) 33, 154
Hpy188I TCNGA 3 cut(s) 55, 645, 682
Hpy8I GTNNAC 2 cut(s) 33, 154
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 552, 759
HpyCH4III ACNGT 4 cut(s) 37, 79, 143, 217
HpyCH4IV ACGT 3 cut(s) 441, 716, 720
HpyCH4V TGCA 2 cut(s) 33, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 4 cut(s) 54, 290, 690, 699
HpySE526I ACGT 3 cut(s) 441, 716, 720
Hsp92II CATG 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 190, 433
LmnI GCTCC 1 cut(s) 741
LpnPI CCDG 8 cut(s) 142, 302, 441, 463, 507, 534, 535, 661
MaeI CTAG 4 cut(s) 95, 320, 608, 669
MaeII ACGT 3 cut(s) 441, 716, 720
MaeIII GTNAC 2 cut(s) 22, 635
MalI GATC 2 cut(s) 192, 435
MboI GATC 2 cut(s) 190, 433
MboII GAAGA 2 cut(s) 42, 440
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 8 cut(s) 15, 242, 259, 277, 300, 461, 525, 756
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 2 cut(s) 15, 586
MseI TTAA 3 cut(s) 18, 207, 341
MslI CAYNNNNRTG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 695
NdeII GATC 2 cut(s) 190, 433
NlaIII CATG 1 cut(s) 744
PfeI GAWTC 2 cut(s) 450, 546
Pfl23II CGTACG 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 375, 571, 574
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PshBI ATTAAT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspLI CGTACG 1 cut(s) 717
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 4 cut(s) 47, 155, 605, 719
RsaNI GTAC 4 cut(s) 46, 154, 604, 718
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 3 cut(s) 18, 207, 341
SatI GCNGC 3 cut(s) 374, 570, 573
Sau3AI GATC 2 cut(s) 190, 433
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 8 cut(s) 15, 242, 259, 277, 300, 461, 525, 756
SsiI CCGC 4 cut(s) 236, 374, 569, 572
SspMI CTAG 4 cut(s) 95, 320, 608, 669
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 3 cut(s) 94, 319, 710
TaaI ACNGT 4 cut(s) 37, 79, 143, 217
TaiI ACGT 3 cut(s) 444, 719, 723
TaqI TCGA 2 cut(s) 444, 615
TasI AATT 8 cut(s) 15, 242, 259, 277, 300, 461, 525, 756
TatI WGTACW 2 cut(s) 45, 153
TauI GCSGC 3 cut(s) 376, 572, 575
TfiI GAWTC 2 cut(s) 450, 546
Tru1I TTAA 3 cut(s) 18, 207, 341
Tru9I TTAA 3 cut(s) 18, 207, 341
TscAI CASTG 4 cut(s) 42, 148, 220, 397
TspDTI ATGAA 4 cut(s) 78, 261, 312, 695
TspRI CASTG 4 cut(s) 42, 148, 220, 397
VneI GTGCAC 1 cut(s) 31
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 2 cut(s) 277, 300
XmaJI CCTAGG 2 cut(s) 94, 319
XspI CTAG 4 cut(s) 95, 320, 608, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.