FvH4_3g35490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000216
Physical Location & Seq
Forward (+)
30521542 .. 30524719
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35490.t1

Sequence Viewer

Length: 1050 bp
ATGAGAGATGGTACAGAAGGAGTTCACAGTTCACGATCGTCACTTGTAGCTGTACCCGTGTCTGATCAGCTTCATCACTCGAAAAGAATAAAACGATCATCATCAATAGCCGTAGCAACAAGACCGTCATCAATATTGATGAATAATATCAACATTGGTGATCTTCCAGAGGGTGTCTTGGTTGAAATCCTGAGTCGACTTCCTTGCTATAAATATGTTTCTCAGTGCAAGTGCGTATCCAAGCATTGGTGCAGTCTCATGTCTGATCCTAGTTTCATTGGTCGCTTCCTATGTCTCCAAAGTGATAAACAGACAGAAATAATCCGTAGTCTGATAAACAGACGAGGGGTGGAATTTCTCAAAAGACTATCATCGTCGGGCAAGCCGCTAACCCGGTTATTTGGAAGTCTTATGAGTTTTAACCATTTGAACGAGGAGCCAATTGTGGTAGGTACCTATAATGACTTAGTATTGTGCTGTGCAAGCAATTTATATCAACGTGATTACTACATCTGCAATGCATACACAAACCAATGGGTACCTCTTCCTCCCCCTCCTCAACTCTGCCAGTTCGCAGCAGTGGGATTTATCTGCGATCTTCCTTACTACCAGTGCAGGAAAGACAAAGACATTCACGACCACATCCAACTTAATACTGATTTTAGGTACAGGGTTGTGAGATTAATTGATGATCCTGAAAAGAAATTATCCTGCAAATTCAAAGTACAGATCTTCTCTTCTGAGACCGGTGAATGGACTGAATCAATTGTCACAACCCCATCACCTGTTCATAATAATTCCATCGATACCCAAATATACTTTCCCTGGAATGGTGTGTTGTATTGGATGGCTCATGATTGCGACTTTCTTATTGGAGTAGATCCATTCATGATCACCGACAGGAATAGTACTAGTGTACCTAGTACTAGCAGTTATGGTACTCCTGATGATGGTATTGGTCAGTACAGATGTCGTTTCATTGAATTTGATCAGCATGCGTGGGACGACACTTGTGTTCTTCAGTGTGTAGGTGTGAACAGAGGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

350

Amino Acids

39.71

Weight (kDa)

6.77

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 52 - 92 9.7e-07 F-box-like
b-prop_At3g26010-like PF24750 121 - 286 5.9e-12 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 452, 538
AccB1I GGYRCC 2 cut(s) 452, 538
AccB7I CCANNNNNTGG 1 cut(s) 246
AccI GTMKAC 1 cut(s) 196
AciI CCGC 1 cut(s) 386
AclWI GGATC 3 cut(s) 260, 686, 875
AcsI RAATTY 3 cut(s) 353, 716, 983
AcuI CTGAAG 1 cut(s) 1004
AfiI CCNNNNNNNGG 4 cut(s) 246, 753, 830, 950
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 4 cut(s) 185, 430, 721, 983
AhlI ACTAGT 1 cut(s) 911
AjnI CCWGG 1 cut(s) 824
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 2 cut(s) 50, 70
AluI AGCT 2 cut(s) 50, 70
Alw26I GTCTC 3 cut(s) 260, 299, 737
AlwI GGATC 3 cut(s) 260, 686, 875
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 3 cut(s) 353, 716, 983
AseI ATTAAT 1 cut(s) 683
AsiGI ACCGGT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 21
Asp718I GGTACC 2 cut(s) 452, 538
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 4 cut(s) 170, 761, 774, 886
BaeI ACNNNNGTAYC 2 cut(s) 900, 933
BanI GGYRCC 2 cut(s) 452, 538
BbvI GCAGC 1 cut(s) 587
BccI CCATC 5 cut(s) 2, 787, 809, 841, 944
BceAI ACGGC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 1 cut(s) 826
BciVI GTATCC 1 cut(s) 247
BclI TGATCA 3 cut(s) 64, 891, 988
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 3 cut(s) 260, 299, 737
BcuI ACTAGT 1 cut(s) 911
BfaI CTAG 4 cut(s) 270, 912, 921, 927
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 1 cut(s) 729
BisI GCNGC 2 cut(s) 386, 576
BlsI GCNGC 2 cut(s) 387, 577
BmcAI AGTACT 2 cut(s) 910, 925
Bme1390I CCNGG 2 cut(s) 394, 826
BmiI GGNNCC 3 cut(s) 438, 454, 540
BmrFI CCNGG 2 cut(s) 394, 826
BpuMI CCSGG 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 804
BsaBI GATNNNNATC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 1 cut(s) 824
BsaWI WCCGGW 1 cut(s) 746
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 753, 830, 950
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 2 cut(s) 568, 610
Bse3DI GCAATG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 100
BseBI CCWGG 1 cut(s) 826
BseCI ATCGAT 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 824
BseGI GGATG 2 cut(s) 642, 852
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 4 cut(s) 246, 753, 830, 950
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 3 cut(s) 182, 236, 732
BseNI ACTGG 2 cut(s) 568, 610
BseRI GAGGAG 2 cut(s) 449, 546
BseXI GCAGC 1 cut(s) 587
BsgI GTGCAG 2 cut(s) 271, 634
Bsh1285I CGRYCG 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 452, 538
BshTI ACCGGT 1 cut(s) 746
BshVI ATCGAT 1 cut(s) 804
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 394, 747
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 4 cut(s) 246, 753, 830, 950
BsmAI GTCTC 3 cut(s) 260, 299, 737
BsmFI GGGAC 1 cut(s) 1016
Bso31I GGTCTC 1 cut(s) 737
BspACI CCGC 1 cut(s) 386
BspCNI CTCAG 3 cut(s) 183, 235, 733
BspDI ATCGAT 1 cut(s) 804
BspHI TCATGA 2 cut(s) 853, 888
BspLI GGNNCC 3 cut(s) 438, 454, 540
BspPI GGATC 3 cut(s) 260, 686, 875
BspT107I GGYRCC 2 cut(s) 452, 538
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 746
BsrI ACTGG 2 cut(s) 568, 610
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 2 cut(s) 29, 126
Bst6I CTCTTC 2 cut(s) 549, 742
BstC8I GCNNGC 3 cut(s) 383, 484, 996
BstDEI CTNAG 4 cut(s) 191, 222, 466, 741
BstF5I GGATG 2 cut(s) 642, 852
BstMAI GTCTC 3 cut(s) 260, 299, 737
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 826
BstNSI RCATGY 1 cut(s) 998
BstSCI CCNGG 2 cut(s) 392, 824
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 2 cut(s) 729, 880
BstYI RGATCY 2 cut(s) 729, 880
Bsu15I ATCGAT 1 cut(s) 804
BsuI GTATCC 1 cut(s) 247
BsuTUI ATCGAT 1 cut(s) 804
BtsCI GGATG 2 cut(s) 642, 852
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 4 cut(s) 230, 585, 617, 1028
Cac8I GCNNGC 3 cut(s) 383, 484, 996
CciI TCATGA 2 cut(s) 853, 888
Cfr10I RCCGGY 1 cut(s) 746
ClaI ATCGAT 1 cut(s) 804
CspAI ACCGGT 1 cut(s) 746
CviAII CATG 4 cut(s) 259, 854, 889, 995
CviJI RGCY 6 cut(s) 50, 70, 110, 385, 439, 851
CviKI_1 RGCY 6 cut(s) 50, 70, 110, 385, 439, 851
DdeI CTNAG 4 cut(s) 191, 222, 466, 741
Eam1104I CTCTTC 2 cut(s) 549, 742
EarI CTCTTC 2 cut(s) 549, 742
Eco31I GGTCTC 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 1004
EcoRII CCWGG 1 cut(s) 824
EcoT22I ATGCAT 1 cut(s) 523
FaeI CATG 4 cut(s) 262, 857, 892, 998
FaqI GGGAC 1 cut(s) 1016
FatI CATG 4 cut(s) 258, 853, 888, 994
FbaI TGATCA 3 cut(s) 64, 891, 988
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 386, 576
FokI GGATG 2 cut(s) 629, 859
Fsp4HI GCNGC 2 cut(s) 386, 576
FspBI CTAG 4 cut(s) 270, 912, 921, 927
GluI GCNGC 2 cut(s) 386, 576
HapII CCGG 2 cut(s) 394, 747
Hin1II CATG 4 cut(s) 262, 857, 892, 998
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 2 cut(s) 193, 761
HpaII CCGG 2 cut(s) 394, 747
HphI GGTGA 4 cut(s) 170, 761, 774, 886
Hpy166II GTNNAC 5 cut(s) 25, 32, 197, 917, 1036
Hpy188I TCNGA 4 cut(s) 64, 265, 333, 742
Hpy188III TCNNGA 8 cut(s) 33, 167, 190, 635, 695, 854, 889, 944
Hpy8I GTNNAC 5 cut(s) 25, 32, 197, 917, 1036
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 29, 126
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 7 cut(s) 228, 252, 482, 516, 521, 615, 714
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 4 cut(s) 191, 222, 466, 741
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 4 cut(s) 262, 857, 892, 998
KpnI GGTACC 2 cut(s) 456, 542
Ksp22I TGATCA 3 cut(s) 64, 891, 988
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 1 cut(s) 587
MaeI CTAG 4 cut(s) 270, 912, 921, 927
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 2 cut(s) 39, 769
MboII GAAGA 6 cut(s) 155, 536, 590, 724, 729, 1010
MfeI CAATTG 2 cut(s) 441, 765
MflI RGATCY 2 cut(s) 729, 880
MluCI AATT 9 cut(s) 353, 441, 487, 684, 704, 716, 765, 796, 983
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 8 cut(s) 163, 338, 427, 552, 558, 564, 567, 1034
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 3 cut(s) 420, 651, 683
MspI CCGG 2 cut(s) 394, 747
MspR9I CCNGG 2 cut(s) 394, 826
MunI CAATTG 2 cut(s) 441, 765
MvaI CCWGG 1 cut(s) 826
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 394
NlaIII CATG 4 cut(s) 262, 857, 892, 998
NlaIV GGNNCC 3 cut(s) 438, 454, 540
NmuCI GTSAC 2 cut(s) 39, 769
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 998
PaeI GCATGC 1 cut(s) 998
PagI TCATGA 2 cut(s) 853, 888
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 761
PflMI CCANNNNNTGG 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 2 cut(s) 387, 577
Ple19I CGATCG 1 cut(s) 38
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshBI ATTAAT 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 824
PspGI CCWGG 1 cut(s) 824
PspN4I GGNNCC 3 cut(s) 438, 454, 540
PsuI RGATCY 2 cut(s) 729, 880
PvuI CGATCG 1 cut(s) 38
SalI GTCGAC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 420, 651, 683
SatI GCNGC 2 cut(s) 386, 576
ScaI AGTACT 2 cut(s) 910, 925
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 394, 826
SpeI ACTAGT 1 cut(s) 911
SphI GCATGC 1 cut(s) 998
Sse9I AATT 9 cut(s) 353, 441, 487, 684, 704, 716, 765, 796, 983
SsiI CCGC 1 cut(s) 386
SspI AATATT 1 cut(s) 135
SspMI CTAG 4 cut(s) 270, 912, 921, 927
StyD4I CCNGG 2 cut(s) 392, 824
TaaI ACNGT 2 cut(s) 29, 126
TaiI ACGT 1 cut(s) 502
TaqI TCGA 3 cut(s) 80, 196, 804
TasI AATT 9 cut(s) 353, 441, 487, 684, 704, 716, 765, 796, 983
TatI WGTACW 4 cut(s) 724, 908, 923, 963
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 3 cut(s) 420, 651, 683
Tru9I TTAA 3 cut(s) 420, 651, 683
TscAI CASTG 4 cut(s) 230, 585, 617, 1028
TseFI GTSAC 2 cut(s) 39, 769
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 39, 769
TspDTI ATGAA 6 cut(s) 62, 155, 265, 779, 877, 967
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 4 cut(s) 230, 585, 617, 1028
Van91I CCANNNNNTGG 1 cut(s) 246
VspI ATTAAT 1 cut(s) 683
XapI RAATTY 3 cut(s) 353, 716, 983
XceI RCATGY 1 cut(s) 998
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 4 cut(s) 270, 912, 921, 927
ZrmI AGTACT 2 cut(s) 910, 925
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.