Rroxscaffold_2G00087380

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000216
Physical Location & Seq
Reverse (-)
9442733 .. 9443273
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087380.1

Sequence Viewer

Length: 480 bp
ATGCAACTGGTTACTCTTCCTCCAATCCCTGCATGCCACGAGTTTGTGCCAGCGGGATTCATAGGCGAGCCGTACTATAATTATGAAGAGGAAGATGGGGATCATCGAAAAGAACAAAAGATCAATATTAATGGTGATTATAGGTGCAAGGTTGTGAGAATCGGGGAATGGAGAGAGTCAGTTGTATCATCTCCAAGAGACCTTTCCTTGTATATTTTTGATCGGGATATTAGCTTTGGTAACAATGGAATGATATATTGGAGGACTCATGATGGTGATCTCATTGGGTTGGGCCCCTTTGTGAACAACAACAATAGCAGTTCTAGTGATCAGTATCAGTGTCGTTTGATTGAATTTGACAGTATTGTGAAGGAGAATTTCACATTTGATTTCTTAGGTGTGTACCAAGGATTTCTGCGCATGTGCGACTACGACTTTGACAATTGTTGGCTGCTTGTTTTGGAGCTGACTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

159

Amino Acids

18.58

Weight (kDa)

4.45

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 419
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 353, 376
AfaI GTAC 2 cut(s) 74, 404
AgsI TTSAA 1 cut(s) 353
AjuI GAANNNNNNNTTGG 4 cut(s) 187, 219, 241, 273
AluBI AGCT 2 cut(s) 234, 466
AluI AGCT 2 cut(s) 234, 466
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 108
AoxI GGCC 1 cut(s) 292
ApaI GGGCCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 2 cut(s) 353, 376
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AseI ATTAAT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 292, 293
AsuHPI GGTGA 2 cut(s) 146, 287
BaeGI GKGCMC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 296
BauI CACGAG 1 cut(s) 38
BbvI GCAGC 1 cut(s) 438
BccI CCATC 2 cut(s) 89, 266
BceAI ACGGC 1 cut(s) 55
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 292, 293
BmiI GGNNCC 2 cut(s) 294, 295
BsaBI GATNNNNATC 3 cut(s) 99, 276, 333
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 12
Bse8I GATNNNNATC 3 cut(s) 99, 276, 333
BseDI CCNNGG 1 cut(s) 406
BseJI GATNNNNATC 3 cut(s) 99, 276, 333
BseNI ACTGG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 1 cut(s) 438
BshFI GGCC 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 192
Bsp120I GGGCCC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 5 cut(s) 100, 120, 220, 277, 328
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 294
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 294, 295
BspPI GGATC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 5 cut(s) 100, 120, 220, 277, 328
BssSI CACGAG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 21, 81
BstC8I GCNNGC 3 cut(s) 34, 51, 68
BstDEI CTNAG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 5 cut(s) 103, 123, 223, 280, 331
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 5 cut(s) 100, 120, 220, 277, 328
BstNSI RCATGY 2 cut(s) 36, 424
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 34, 51, 68
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 292, 293
Csp6I GTAC 2 cut(s) 73, 403
CviAII CATG 3 cut(s) 33, 269, 421
CviJI RGCY 5 cut(s) 70, 234, 294, 451, 466
CviKI_1 RGCY 5 cut(s) 70, 234, 294, 451, 466
CviQI GTAC 2 cut(s) 73, 403
DdeI CTNAG 1 cut(s) 394
DpnI GATC 5 cut(s) 102, 122, 222, 279, 330
DpnII GATC 5 cut(s) 100, 120, 220, 277, 328
Eam1104I CTCTTC 2 cut(s) 21, 81
EarI CTCTTC 2 cut(s) 21, 81
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 3 cut(s) 36, 272, 424
FaiI YATR 9 cut(s) 34, 62, 78, 84, 141, 213, 256, 270, 422
FatI CATG 3 cut(s) 32, 268, 420
FauI CCCGC 1 cut(s) 46
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 1 cut(s) 324
FspI TGCGCA 1 cut(s) 419
GlaI GCGC 1 cut(s) 419
GluI GCNGC 1 cut(s) 452
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 1 cut(s) 420
Hin1II CATG 3 cut(s) 36, 272, 424
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 4 cut(s) 57, 159, 176, 265
HphI GGTGA 2 cut(s) 146, 287
Hpy166II GTNNAC 2 cut(s) 304, 403
Hpy188III TCNNGA 2 cut(s) 224, 269
Hpy8I GTNNAC 2 cut(s) 304, 403
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 4, 32, 147
HpyF3I CTNAG 1 cut(s) 394
Hsp92II CATG 3 cut(s) 36, 272, 424
HspAI GCGC 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 5 cut(s) 100, 120, 220, 277, 328
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 2 cut(s) 42, 63
Lsp1109I GCAGC 1 cut(s) 438
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 10, 239
MalI GATC 5 cut(s) 102, 122, 222, 279, 330
MboI GATC 5 cut(s) 100, 120, 220, 277, 328
MboII GAAGA 3 cut(s) 8, 98, 104
MfeI CAATTG 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 4 cut(s) 79, 353, 376, 442
MlyI GAGTC 2 cut(s) 185, 259
MnlI CCTC 3 cut(s) 30, 82, 255
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 53
MunI CAATTG 1 cut(s) 442
NdeII GATC 5 cut(s) 100, 120, 220, 277, 328
NlaIII CATG 3 cut(s) 36, 272, 424
NlaIV GGNNCC 2 cut(s) 294, 295
NsbI TGCGCA 1 cut(s) 419
NspI RCATGY 2 cut(s) 36, 424
PaeI GCATGC 1 cut(s) 36
PagI TCATGA 1 cut(s) 268
PfeI GAWTC 2 cut(s) 57, 159
PkrI GCNGC 1 cut(s) 453
PleI GAGTC 2 cut(s) 184, 259
PpsI GAGTC 2 cut(s) 184, 259
PshBI ATTAAT 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 294, 295
PspOMI GGGCCC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 292, 293
RsaI GTAC 2 cut(s) 74, 404
RsaNI GTAC 2 cut(s) 73, 403
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 5 cut(s) 100, 120, 220, 277, 328
Sau96I GGNCC 2 cut(s) 292, 293
SchI GAGTC 2 cut(s) 185, 259
SduI GDGCHC 1 cut(s) 296
SetI ASST 6 cut(s) 146, 153, 204, 236, 400, 468
SmiMI CAYNNNNRTG 1 cut(s) 273
SphI GCATGC 1 cut(s) 36
Sse9I AATT 4 cut(s) 79, 353, 376, 442
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 324
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 106
TasI AATT 4 cut(s) 79, 353, 376, 442
TfiI GAWTC 2 cut(s) 57, 159
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 344
TseI GCWGC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 49, 99
TspRI CASTG 1 cut(s) 344
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 2 cut(s) 353, 376
XceI RCATGY 2 cut(s) 36, 424
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.