Rh6BG212600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
40184214 .. 40184555
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG212600.1

Sequence Viewer

Length: 342 bp
ATGTCAAATCCTTCTTTCATTGGCCGCTTCCTGTGCCTGCAAATGGAAAGGCCAATAATACGTACCATGATAAACGCTGAAGGGGTGGAATTCCATAACAAGACTTCATCATTGTCCAAGCCACACACTCCTTTGTTCAGAAGACTGATGAGTATCTACAGTTTGGAGAAAGAGCCAATTGTGGTTGGTACATACAATGACTTGGTTCTGTGCTGTGCAACCAAGTATGAACAACGTGATTACTACATCTGCAATCCATACACAATCCAATGGGCTGAACTTCCTCCCCCGCCTCGAGTATACGAGTACACACCTGTGGGATTCATCTGCGATCTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

13.17

Weight (kDa)

6.71

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AciI CCGC 2 cut(s) 25, 290
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 3 cut(s) 64, 190, 308
AfiI CCNNNNNNNGG 1 cut(s) 43
AleI CACNNNNGTG 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 2 cut(s) 22, 50
ApoI RAATTY 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 148
BfaI CTAG 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 152
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 43
BshFI GGCC 2 cut(s) 24, 52
BsiHKCI CYCGRG 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 43
BsnI GGCC 2 cut(s) 24, 52
BsoBI CYCGRG 1 cut(s) 294
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 25, 290
BspANI GGCC 2 cut(s) 24, 52
BssMI GATC 1 cut(s) 331
BssNAI GTATAC 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 157
BstSNI TACGTA 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 24, 52
Cac8I GCNNGC 1 cut(s) 38
Csp6I GTAC 3 cut(s) 63, 189, 307
CviAII CATG 1 cut(s) 67
CviJI RGCY 5 cut(s) 24, 52, 121, 175, 275
CviKI_1 RGCY 5 cut(s) 24, 52, 121, 175, 275
CviQI GTAC 3 cut(s) 63, 189, 307
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 22
Eco105I TACGTA 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 89
FaeI CATG 1 cut(s) 70
FaiI YATR 6 cut(s) 68, 96, 193, 228, 259, 301
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 340
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 2 cut(s) 24, 52
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 321
Hpy166II GTNNAC 2 cut(s) 301, 309
Hpy188I TCNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 301, 309
HpyAV CCTTC 2 cut(s) 21, 74
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 61, 235
HpyCH4V TGCA 3 cut(s) 40, 218, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpySE526I ACGT 2 cut(s) 61, 235
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 3 cut(s) 44, 50, 327
MaeI CTAG 1 cut(s) 340
MaeII ACGT 2 cut(s) 61, 235
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 2 cut(s) 153, 326
MfeI CAATTG 1 cut(s) 177
MluCI AATT 2 cut(s) 89, 177
MnlI CCTC 2 cut(s) 294, 303
MslI CAYNNNNRTG 1 cut(s) 314
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 294
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 1 cut(s) 26
Ppu21I YACGTR 1 cut(s) 62
PspXI VCTCGAGB 1 cut(s) 294
RsaI GTAC 3 cut(s) 64, 190, 308
RsaNI GTAC 3 cut(s) 63, 189, 307
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 331
SetI ASST 3 cut(s) 64, 238, 316
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 294
SlaI CTCGAG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SnaBI TACGTA 1 cut(s) 62
Sse9I AATT 2 cut(s) 89, 177
SsiI CCGC 2 cut(s) 25, 290
SspMI CTAG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 64, 238
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 89, 177
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 7, 96, 243, 313
XapI RAATTY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.