Rmu_co8427407.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8427407.1
OG0000216
Physical Location & Seq
Forward (+)
248 .. 1291
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8427407.1_g000001.1.cds

Sequence Viewer

Length: 1044 bp
atgtttgtcgtacattcataccctttggcagataacacggcagaattgtttacaattgattccaagcagactcatacggagttaagagcactcgattttcttcccagcaagccggttgtcgtagcaacatacaatgacttgattttgttgtgtgaaaaaacattcggttttcaaaggaagtactacatctgcaatccgtacaccaagcaatgggttgctgttcctcctcctcccattctattcccccaacaagaagtaggtgtgggatttatctgtgatcccgactataggtgccggattgtacgactccttgagtttgacgcagaacctgatgacttccgattaaaggtggagatgttctcttccgagactggtaaatggatagaatcagttgtcctatgcccaaaaaggtttagacctcatcctctcgagcagagtgcaccagcccttgcttacaatggaaccttgtactggttaggtcatggtgggattcttattgggttggagcctttcaagctcgacaataaaaataaccataactatcattgtcattttatttccgggcctcgttccgggtttccattgtttaatgagtcatgcaaatacaccgattggctgggtgtctgcaggggttgtgtgaggatgtgccggctgtatactctgacacgtttcattctttttgtgtgggagctgaaagacgatgaggtggatggagttggaggcaaaaagatgaaatggtgtttaaaggagaggatcttcctggaccaaattgagtcggaatatatggtgcctgatccctaccggcttctggctttggacccaaatgatgaagacataatgtacctgctacggagacctatcagctccgatccaaaagacattgttaagtgcaatattcgtacagaaacgcttattgacatctctccaaagttgccattaaagacagatatagaggcatttccatttgtgctctcatggtggcggtggccaacaccagttcctaaattagaccatcacaacaatagcagctgcccaccgcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

347

Amino Acids

40.34

Weight (kDa)

6.16

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 852
AccB1I GGYRCC 2 cut(s) 291, 787
AccB7I CCANNNNNTGG 1 cut(s) 210
AccI GTMKAC 1 cut(s) 656
AciI CCGC 2 cut(s) 982, 1037
AclWI GGATC 4 cut(s) 272, 761, 788, 863
AcoI YGGCCR 1 cut(s) 986
AfaI GTAC 7 cut(s) 12, 182, 200, 303, 470, 842, 901
AfiI CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 2 cut(s) 173, 514
AjnI CCWGG 1 cut(s) 759
AluBI AGCT 4 cut(s) 517, 691, 864, 1029
AluI AGCT 4 cut(s) 517, 691, 864, 1029
Alw21I GWGCWC 3 cut(s) 91, 442, 972
Alw26I GTCTC 2 cut(s) 362, 847
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 4 cut(s) 272, 761, 788, 863
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 2 cut(s) 563, 986
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 1026, 1029
AspS9I GGNCC 3 cut(s) 563, 763, 817
AsuC2I CCSGG 2 cut(s) 562, 574
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 763, 817
BaeGI GKGCMC 1 cut(s) 442
BalI TGGCCA 1 cut(s) 988
BanI GGYRCC 2 cut(s) 291, 787
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 3 cut(s) 91, 442, 972
BbvI GCAGC 2 cut(s) 1016, 1038
BccI CCATC 2 cut(s) 704, 1020
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 1 cut(s) 761
BcnI CCSGG 2 cut(s) 562, 574
BcoDI GTCTC 2 cut(s) 362, 847
BfmI CTRYAG 2 cut(s) 286, 625
BfuAI ACCTGC 1 cut(s) 852
BisI GCNGC 2 cut(s) 1027, 1030
BlsI GCNGC 2 cut(s) 1028, 1031
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 3 cut(s) 562, 574, 761
Bme18I GGWCC 2 cut(s) 763, 817
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 563, 763, 817
BmiI GGNNCC 5 cut(s) 293, 463, 507, 789, 819
BmrFI CCNGG 3 cut(s) 562, 574, 761
BpiI GAAGAC 1 cut(s) 837
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 562, 574
BsaI GGTCTC 1 cut(s) 847
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
Bse118I RCCGGY 3 cut(s) 112, 648, 801
Bse1I ACTGG 3 cut(s) 376, 476, 995
Bse3DI GCAATG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 761
BseGI GGATG 3 cut(s) 421, 648, 715
BseLI CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
BseMI GCAATG 1 cut(s) 215
BseNI ACTGG 3 cut(s) 376, 476, 995
BseRI GAGGAG 2 cut(s) 216, 219
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 2 cut(s) 1016, 1038
BseYI CCCAGC 2 cut(s) 104, 616
BshFI GGCC 2 cut(s) 565, 988
BshNI GGYRCC 2 cut(s) 291, 787
BsiHKAI GWGCWC 3 cut(s) 91, 442, 972
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 6 cut(s) 113, 295, 561, 573, 649, 802
BslI CCNNNNNNNGG 6 cut(s) 210, 288, 346, 471, 572, 808
BsmAI GTCTC 2 cut(s) 362, 847
BsnI GGCC 2 cut(s) 565, 988
Bso31I GGTCTC 1 cut(s) 847
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 91, 442, 972
Bsp143I GATC 4 cut(s) 277, 753, 793, 868
BspACI CCGC 2 cut(s) 982, 1037
BspANI GGCC 2 cut(s) 565, 988
BspLI GGNNCC 5 cut(s) 293, 463, 507, 789, 819
BspMAI CTGCAG 1 cut(s) 629
BspMI ACCTGC 1 cut(s) 852
BspPI GGATC 4 cut(s) 272, 761, 788, 863
BspT107I GGYRCC 2 cut(s) 291, 787
BspTNI GGTCTC 1 cut(s) 847
BsrDI GCAATG 1 cut(s) 215
BsrFI RCCGGY 3 cut(s) 112, 648, 801
BsrI ACTGG 3 cut(s) 376, 476, 995
BssAI RCCGGY 3 cut(s) 112, 648, 801
BssMI GATC 4 cut(s) 277, 753, 793, 868
BssNAI GTATAC 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 761
Bst6I CTCTTC 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 110, 650
BstF5I GGATG 3 cut(s) 421, 648, 715
BstKTI GATC 4 cut(s) 280, 756, 796, 871
BstMAI GTCTC 2 cut(s) 362, 847
BstMBI GATC 4 cut(s) 277, 753, 793, 868
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNI CCWGG 1 cut(s) 761
BstSCI CCNGG 3 cut(s) 560, 572, 759
BstSFI CTRYAG 2 cut(s) 286, 625
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 1016, 1038
BstV2I GAAGAC 1 cut(s) 837
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
BstZ17I GTATAC 1 cut(s) 657
BsuRI GGCC 2 cut(s) 565, 988
BtsCI GGATG 3 cut(s) 421, 648, 715
BveI ACCTGC 1 cut(s) 852
Cac8I GCNNGC 2 cut(s) 110, 650
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 3 cut(s) 112, 648, 801
Cfr13I GGNCC 3 cut(s) 563, 763, 817
CseI GACGC 1 cut(s) 329
Csp6I GTAC 7 cut(s) 11, 181, 199, 302, 469, 841, 900
CviAII CATG 3 cut(s) 482, 597, 975
CviQI GTAC 7 cut(s) 11, 181, 199, 302, 469, 841, 900
DpnI GATC 4 cut(s) 279, 755, 795, 870
DpnII GATC 4 cut(s) 277, 753, 793, 868
DraI TTTAAA 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 986
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 847
Eco47I GGWCC 2 cut(s) 763, 817
Eco88I CYCGRG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 759
FaeI CATG 3 cut(s) 485, 600, 978
FatI CATG 3 cut(s) 481, 596, 974
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 1027, 1030
FokI GGATG 3 cut(s) 408, 655, 722
Fsp4HI GCNGC 2 cut(s) 1027, 1030
GluI GCNGC 2 cut(s) 1027, 1030
GsaI CCCAGC 2 cut(s) 108, 620
HaeIII GGCC 2 cut(s) 565, 988
HapII CCGG 6 cut(s) 113, 295, 561, 573, 649, 802
HgaI GACGC 1 cut(s) 329
Hin1II CATG 3 cut(s) 485, 600, 978
HinfI GANTC 7 cut(s) 59, 70, 306, 386, 490, 593, 773
HpaII CCGG 6 cut(s) 113, 295, 561, 573, 649, 802
Hpy166II GTNNAC 4 cut(s) 51, 201, 440, 657
Hpy188I TCNGA 5 cut(s) 341, 367, 663, 778, 868
Hpy188III TCNNGA 2 cut(s) 281, 428
Hpy8I GTNNAC 4 cut(s) 51, 201, 440, 657
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 5 cut(s) 192, 440, 600, 627, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 3 cut(s) 485, 600, 978
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
Kzo9I GATC 4 cut(s) 277, 753, 793, 868
LmnI GCTCC 3 cut(s) 505, 688, 869
Lsp1109I GCAGC 2 cut(s) 1016, 1038
MaeII ACGT 1 cut(s) 667
MalI GATC 4 cut(s) 279, 755, 795, 870
MboI GATC 4 cut(s) 277, 753, 793, 868
MboII GAAGA 4 cut(s) 92, 354, 748, 842
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 3 cut(s) 91, 442, 972
MlsI TGGCCA 1 cut(s) 988
MluCI AATT 4 cut(s) 44, 54, 768, 1004
MluNI TGGCCA 1 cut(s) 988
MlyI GAGTC 4 cut(s) 64, 300, 602, 782
MmeI TCCRAC 3 cut(s) 483, 697, 756
Mox20I TGGCCA 1 cut(s) 988
MroNI GCCGGC 1 cut(s) 648
MscI TGGCCA 1 cut(s) 988
MseI TTAA 6 cut(s) 83, 344, 588, 743, 885, 938
Msp20I TGGCCA 1 cut(s) 988
MspA1I CMGCKG 1 cut(s) 1029
MspI CCGG 6 cut(s) 113, 295, 561, 573, 649, 802
MspR9I CCNGG 3 cut(s) 562, 574, 761
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 761
MwoI GCNNNNNNNGC 1 cut(s) 514
NaeI GCCGGC 1 cut(s) 650
NciI CCSGG 2 cut(s) 562, 574
NdeII GATC 4 cut(s) 277, 753, 793, 868
NgoMIV GCCGGC 1 cut(s) 648
NlaIII CATG 3 cut(s) 485, 600, 978
NlaIV GGNNCC 5 cut(s) 293, 463, 507, 789, 819
PaeR7I CTCGAG 1 cut(s) 428
PdiI GCCGGC 1 cut(s) 650
PfeI GAWTC 3 cut(s) 59, 386, 490
PflMI CCANNNNNTGG 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 759
PkrI GCNGC 2 cut(s) 1028, 1031
PleI GAGTC 4 cut(s) 64, 300, 601, 781
PpsI GAGTC 4 cut(s) 64, 300, 601, 781
Psp6I CCWGG 1 cut(s) 759
PspFI CCCAGC 2 cut(s) 104, 616
PspGI CCWGG 1 cut(s) 759
PspN4I GGNNCC 5 cut(s) 293, 463, 507, 789, 819
PspPI GGNCC 3 cut(s) 563, 763, 817
PstI CTGCAG 1 cut(s) 629
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 753
PvuII CAGCTG 1 cut(s) 1029
RsaI GTAC 7 cut(s) 12, 182, 200, 303, 470, 842, 901
RsaNI GTAC 7 cut(s) 11, 181, 199, 302, 469, 841, 900
SaqAI TTAA 6 cut(s) 83, 344, 588, 743, 885, 938
SatI GCNGC 2 cut(s) 1027, 1030
Sau3AI GATC 4 cut(s) 277, 753, 793, 868
Sau96I GGNCC 3 cut(s) 563, 763, 817
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 4 cut(s) 64, 300, 602, 782
ScrFI CCNGG 3 cut(s) 562, 574, 761
SduI GDGCHC 3 cut(s) 91, 442, 972
SfcI CTRYAG 2 cut(s) 286, 625
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 2 cut(s) 763, 817
SlaI CTCGAG 1 cut(s) 428
SmlI CTYRAG 2 cut(s) 311, 428
SmoI CTYRAG 2 cut(s) 311, 428
Sse9I AATT 4 cut(s) 44, 54, 768, 1004
SsiI CCGC 2 cut(s) 982, 1037
SspI AATATT 1 cut(s) 895
StyD4I CCNGG 3 cut(s) 560, 572, 759
TaiI ACGT 1 cut(s) 670
TaqI TCGA 3 cut(s) 93, 429, 519
TasI AATT 4 cut(s) 44, 54, 768, 1004
TatI WGTACW 2 cut(s) 180, 468
TfiI GAWTC 3 cut(s) 59, 386, 490
Tru1I TTAA 6 cut(s) 83, 344, 588, 743, 885, 938
Tru9I TTAA 6 cut(s) 83, 344, 588, 743, 885, 938
TseI GCWGC 2 cut(s) 1026, 1029
TspDTI ATGAA 4 cut(s) 6, 661, 746, 843
TspGWI ACGGA 3 cut(s) 92, 186, 865
Van91I CCANNNNNTGG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 438
VpaK11BI GGWCC 2 cut(s) 763, 817
XhoI CTCGAG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 656
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.